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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0283200 |
| Transcript ID | LotjaGi4g1v0283200.4 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT5G35160.2 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9FYQ8|TMN11_ARATH Transmembrane 9 superfamily member 11; TrEMBL-Plants: tr|A0A151R0K2|A0A151R0K2_CAJCA Transmembrane 9 superfamily member; Found in the gene: LotjaGi4g1v0283200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65516590..65518815) extracted from Lotus japonicus Gifu genome v1.2.
CTGCCCTGAGGTGAGTCTAATTCACACTTTTTTGCCATACCGCATTTCCTTTGCTTCTTCATTGCATGCATCTGTATCAT CATCATCATCATGGTTTCTGTGTTGTGTTTGCATCTGTGTTTTCATTTTTGGCATCGGCATTGAACTGAGAAACTAGGTA GAGTTTGCCATTCCTTTTACATTTTCCTTTGCTTTTTTTTTTGACATTACCCTTATCTGGGTCTTTCAGATCTGGCGCAA AATTCTCCAAAAATGGAGTCTTTTCATGGATTCATGATGTGGGTCTTGGCTTTTTGTTTGGTATTTCAATCTGGGAATGG GTTTTACCTTCCGGGTAGTTACCCACACAAGTATGCTGTTGGTGATGAGTTGTCGGTGAAGGTGAATTCTCTGACCTCGA TTGATACTGAGATGCCATTTAGCTATTACAGTTTACCCTTTTGCACTCCCTTGGGTGGTGTCAAGGATAGTGCTGAGAAT CTCGGTGAACTCCTCATGGGGGATCGGATCGAGAACTCACCTTACAGGTTCAAGATGTATACCAATGAGTCTGAGGTGTT CTTGTGCAAAGTGGATAAGCTGTCTGCAGATCAGTTCAAGCTCTTGAAGGAGAGGATTGATGAGATGTATCAGGTGAATT TGATACTTGATAATTTGCCTGCTATTCGGTTTACGAAGAAGGAGGAGTATTTTCTGAGATGGACTGGGTATCCTGTTGGT ATCAAGATTCAGGATGTGTATTACATGTTTAACCATTTGAGGTTTAATGTTCTTGTCCATAAGTATGAGGAGAACAATGT GGCTCGTGTGATGGGAACCGGTGATGCGGCTGAGATGATCCCGCCGATTGGTAAGGAGGGATCTGACAAGCCTGGTTACA TGGTTGTTGGGTTTGAGGTGGTGCCTTGTAGTATTATGCATAATGCTAATACGGTTCAGAGCTTGAAAATGTATGAGAAA TACACGTCGCCGATCAAATGCGATCCGACCACCGTGGCAATGCCGATTAAAGAAGGTCAACCACTTGTGTTTACTTATGA GGTCACCTTTGAGGAGAGTGATATCAAGTGGCCATCTAGATGGGATGCCTACTTGAAGATGGAGGGAGCCAAGGTCCATT GGTTCTCCATCCTCAATTCGCTTATGGTGATCACTTTTCTTGCTGGTATTGTTCTTGTTATCTTCCTGAGAACTGTTAGG AGGGATCTGACCCGTTATGAGGAGCTTGATAAGGAGGCTCAAGCACAGATGAATGAAGAGTTATCTGGTTGGAAGCTTGT TGTGGGAGATGTTTTCCGCGCCCCGTCGAATCCTTCTTTGTTGTGTATAATGGTTGGGGATGGAGTTCAGATTCTTGGGA TGGCTGTCGTGACAATATTGTTTGCCGCACTTGGATTCATGTCACCTGCCTCTCGCGGAACACTCATCACAGGTATGCTG TTTTTCTATATGATCCTCGGTATTGTTGCTGGCTATGTTGCAGTTCGGCTATGGAGGACACTCGGCTGCGGCGATCACAA GGGATGGGTTTCAGTTGCTTGGAAGGCTGCTTGTTTCTTTCCTGGGATTGCCTTTTTGATCCTGACATCATTGAACTTCC TTTTGTGGGGAAGCCACAGCACAGGAGCCATTCCATTTTCGCTTTTCGTTGTGCTGATTTTGCTTTGGTTCTGCATTTCT GTCCCCCTTACCCTTGTTGGTGGGTACTTTGGAGCTAGAGCACCACACATTGAGTATCCAGTTAGGACCAATCAAATTCC CCGCGAAGTTCCCCAGCAGCGGTACCCTTCATGGCTTTTGGTTCTAGGTGCTGGCACCCTTCCATTTGGTACCCTTTTCA TTGAGCTCTTCTTCATCATGTCAAGTATTTGGATGGGTCGCGTTTACTATGTCTTCGGGTTTCTCTTTATTGTTATGATT CTCCTTGTGGTGGTTTGTGCTGAGGTATCTCTAGTTCTGACCTACATGCACCTCTGTGTGGAGGATTGGAGATGGTGGTG GAAATCATTCTTCGCCTCGGGTTCGGTTGCCATATACATCTTTTTGTACTCCATAAACTATCTTGTGTTTGATCTCAAGA ATCTGAGTGGACCTGTTTCTGCAACTCTTTACCTGGGATACTCACTCTTCATGGTTCTAGCTATCATGTTGGCTACAGGC ACAGTTGGGTTCCTGTCTTCATTCTGGTTCGTTCATTACTTGTTCTCTTCAGTCAAGTTGGATTGA
CDS sequence (LotjaGi4g1v0283200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCTTTTCATGGATTCATGATGTGGGTCTTGGCTTTTTGTTTGGTATTTCAATCTGGGAATGGGTTTTACCTTCC GGGTAGTTACCCACACAAGTATGCTGTTGGTGATGAGTTGTCGGTGAAGGTGAATTCTCTGACCTCGATTGATACTGAGA TGCCATTTAGCTATTACAGTTTACCCTTTTGCACTCCCTTGGGTGGTGTCAAGGATAGTGCTGAGAATCTCGGTGAACTC CTCATGGGGGATCGGATCGAGAACTCACCTTACAGGTTCAAGATGTATACCAATGAGTCTGAGGTGTTCTTGTGCAAAGT GGATAAGCTGTCTGCAGATCAGTTCAAGCTCTTGAAGGAGAGGATTGATGAGATGTATCAGGTGAATTTGATACTTGATA ATTTGCCTGCTATTCGGTTTACGAAGAAGGAGGAGTATTTTCTGAGATGGACTGGGTATCCTGTTGGTATCAAGATTCAG GATGTGTATTACATGTTTAACCATTTGAGGTTTAATGTTCTTGTCCATAAGTATGAGGAGAACAATGTGGCTCGTGTGAT GGGAACCGGTGATGCGGCTGAGATGATCCCGCCGATTGGTAAGGAGGGATCTGACAAGCCTGGTTACATGGTTGTTGGGT TTGAGGTGGTGCCTTGTAGTATTATGCATAATGCTAATACGGTTCAGAGCTTGAAAATGTATGAGAAATACACGTCGCCG ATCAAATGCGATCCGACCACCGTGGCAATGCCGATTAAAGAAGGTCAACCACTTGTGTTTACTTATGAGGTCACCTTTGA GGAGAGTGATATCAAGTGGCCATCTAGATGGGATGCCTACTTGAAGATGGAGGGAGCCAAGGTCCATTGGTTCTCCATCC TCAATTCGCTTATGGTGATCACTTTTCTTGCTGGTATTGTTCTTGTTATCTTCCTGAGAACTGTTAGGAGGGATCTGACC CGTTATGAGGAGCTTGATAAGGAGGCTCAAGCACAGATGAATGAAGAGTTATCTGGTTGGAAGCTTGTTGTGGGAGATGT TTTCCGCGCCCCGTCGAATCCTTCTTTGTTGTGTATAATGGTTGGGGATGGAGTTCAGATTCTTGGGATGGCTGTCGTGA CAATATTGTTTGCCGCACTTGGATTCATGTCACCTGCCTCTCGCGGAACACTCATCACAGGTATGCTGTTTTTCTATATG ATCCTCGGTATTGTTGCTGGCTATGTTGCAGTTCGGCTATGGAGGACACTCGGCTGCGGCGATCACAAGGGATGGGTTTC AGTTGCTTGGAAGGCTGCTTGTTTCTTTCCTGGGATTGCCTTTTTGATCCTGACATCATTGAACTTCCTTTTGTGGGGAA GCCACAGCACAGGAGCCATTCCATTTTCGCTTTTCGTTGTGCTGATTTTGCTTTGGTTCTGCATTTCTGTCCCCCTTACC CTTGTTGGTGGGTACTTTGGAGCTAGAGCACCACACATTGAGTATCCAGTTAGGACCAATCAAATTCCCCGCGAAGTTCC CCAGCAGCGGTACCCTTCATGGCTTTTGGTTCTAGGTGCTGGCACCCTTCCATTTGGTACCCTTTTCATTGAGCTCTTCT TCATCATGTCAAGTATTTGGATGGGTCGCGTTTACTATGTCTTCGGGTTTCTCTTTATTGTTATGATTCTCCTTGTGGTG GTTTGTGCTGAGGTATCTCTAGTTCTGACCTACATGCACCTCTGTGTGGAGGATTGGAGATGGTGGTGGAAATCATTCTT CGCCTCGGGTTCGGTTGCCATATACATCTTTTTGTACTCCATAAACTATCTTGTGTTTGATCTCAAGAATCTGAGTGGAC CTGTTTCTGCAACTCTTTACCTGGGATACTCACTCTTCATGGTTCTAGCTATCATGTTGGCTACAGGCACAGTTGGGTTC CTGTCTTCATTCTGGTTCGTTCATTACTTGTTCTCTTCAGTCAAGTTGGATTGA
Protein sequence (LotjaGi4g1v0283200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESFHGFMMWVLAFCLVFQSGNGFYLPGSYPHKYAVGDELSVKVNSLTSIDTEMPFSYYSLPFCTPLGGVKDSAENLGEL LMGDRIENSPYRFKMYTNESEVFLCKVDKLSADQFKLLKERIDEMYQVNLILDNLPAIRFTKKEEYFLRWTGYPVGIKIQ DVYYMFNHLRFNVLVHKYEENNVARVMGTGDAAEMIPPIGKEGSDKPGYMVVGFEVVPCSIMHNANTVQSLKMYEKYTSP IKCDPTTVAMPIKEGQPLVFTYEVTFEESDIKWPSRWDAYLKMEGAKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLT RYEELDKEAQAQMNEELSGWKLVVGDVFRAPSNPSLLCIMVGDGVQILGMAVVTILFAALGFMSPASRGTLITGMLFFYM ILGIVAGYVAVRLWRTLGCGDHKGWVSVAWKAACFFPGIAFLILTSLNFLLWGSHSTGAIPFSLFVVLILLWFCISVPLT LVGGYFGARAPHIEYPVRTNQIPREVPQQRYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLFIVMILLVV VCAEVSLVLTYMHLCVEDWRWWWKSFFASGSVAIYIFLYSINYLVFDLKNLSGPVSATLYLGYSLFMVLAIMLATGTVGF LSSFWFVHYLFSSVKLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 657 | 657 | 0.0 | ||
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 657 | 657 | 0.0 | – | |
| Phobius | 10 | 18 | 9 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 289 | 266 | - | – | |
| Pfam | 55 | 609 | 555 | 2.4E-186 | ||
| TMHMM | 290 | 312 | 23 | - | – | |
| Phobius | 290 | 312 | 23 | - | – | |
| Coils | 312 | 332 | 21 | - | – | |
| Phobius | 313 | 355 | 43 | - | – | |
| Phobius | 356 | 383 | 28 | - | – | |
| TMHMM | 357 | 379 | 23 | - | – | |
| Phobius | 384 | 388 | 5 | - | – | |
| Phobius | 389 | 411 | 23 | - | – | |
| TMHMM | 389 | 411 | 23 | - | – | |
| Phobius | 412 | 431 | 20 | - | – | |
| Phobius | 432 | 452 | 21 | - | – | |
| TMHMM | 432 | 454 | 23 | - | – | |
| Phobius | 453 | 463 | 11 | - | – | |
| TMHMM | 464 | 486 | 23 | - | – | |
| Phobius | 464 | 488 | 25 | - | – | |
| Phobius | 489 | 513 | 25 | - | – | |
| TMHMM | 514 | 536 | 23 | - | – | |
| Phobius | 514 | 540 | 27 | - | – | |
| Phobius | 541 | 545 | 5 | - | – | |
| Phobius | 546 | 569 | 24 | - | – | |
| TMHMM | 546 | 568 | 23 | - | – | |
| Phobius | 570 | 580 | 11 | - | – | |
| TMHMM | 581 | 603 | 23 | - | – | |
| Phobius | 581 | 605 | 25 | - | – | |
| Phobius | 606 | 624 | 19 | - | – | |
| TMHMM | 623 | 645 | 23 | - | – | |
| Phobius | 625 | 651 | 27 | - | – | |
| Phobius | 652 | 657 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0283200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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