Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0283200 |
| Transcript ID | LotjaGi4g1v0283200.6 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT5G35160.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9FYQ8|TMN11_ARATH Transmembrane 9 superfamily member 11; TrEMBL-Plants: tr|A0A1J7GHF0|A0A1J7GHF0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0283200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65516842..65518815) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGTCTTTTCATGGATTCATGATGTGGGTCTTGGCTTTTTGTTTGGTATTTCAATCTGGGAATGGGTTTTACCTTCC GGGTAGTTACCCACACAAGTATGCTGTTGGTGATGAGTTGTCGGTGAAGGTGAATTCTCTGACCTCGATTGATACTGAGA TGCCATTTAGCTATTACAGTTTACCCTTTTGCACTCCCTTGGGTGGTGTCAAGGATAGTGCTGAGAATCTCGGTGAACTC CTCATGGGGGATCGGATCGAGAACTCACCTTACAGGTTCAAGATGTATACCAATGAGTCTGAGGTGTTCTTGTGCAAAGT GGATAAGCTGTCTGCAGATCAGTTCAAGCTCTTGAAGGAGAGGATTGATGAGATGTATCAGGTGAATTTGATACTTGATA ATTTGCCTGCTATTCGGTTTACGAAGAAGGAGGAGTATTTTCTGAGATGGACTGGGTATCCTGTTGGTATCAAGATTCAG GATGTGTATTACATGTTTAACCATTTGAGGTTTAATGTTCTTGTCCATAAGTATGAGGAGAACAATGTGGCTCGTGTGAT GGGAACCGGTGATGCGGCTGAGATGATCCCGCCGATTGGTAAGGAGGGATCTGACAAGCCTGGTTACATGGTTGTTGGGT TTGAGGTGGTGCCTTGTAGTATTATGCATAATGCTAATACGGTTCAGAGCTTGAAAATGTATGAGAAATACACGTCGCCG ATCAAATGCGATCCGACCACCGTGGCAATGCCGATTAAAGAAGGTCAACCACTTGTGTTTACTTATGAGGTCACCTTTGA GGAGAGTGATATCAAGTGGCCATCTAGATGGGATGCCTACTTGAAGATGGAGGGAGCCAAGGTCCATTGGTTCTCCATCC TCAATTCGCTTATGGTGATCACTTTTCTTGCTGGTATTGTTCTTGTTATCTTCCTGAGAACTGTTAGGAGGGATCTGACC CGTTATGAGGAGCTTGATAAGGAGGCTCAAGCACAGATGAATGAAGAGTTATCTGGTTGGAAGCTTGTTGTGGGAGATGT TTTCCGCGCCCCGTCGAATCCTTCTTTGTTGTGTATAATGGTTGGGGATGGAGTTCAGATTCTTGGGATGGCTGTCGTGA CAATATTGTTTGCCGCACTTGGATTCATGTCACCTGCCTCTCGCGGAACACTCATCACAGGTATGCTGTTTTTCTATATG ATCCTCGGTATTGTTGCTGGCTATGTTGCAGTTCGGCTATGGAGGACACTCGGCTGCGGCGATCACAAGGGATGGGTTTC AGTTGCTTGGAAGGCTGCTTGTTTCTTTCCTGGGATTGCCTTTTTGATCCTGACATCATTGAACTTCCTTTTGTGGGGAA GCCACAGCACAGGAGCCATTCCATTTTCGCTTTTCGTTGTGCTGATTTTGCTTTGGTTCTGCATTTCTGTCCCCCTTACC CTTGTTGGTGGGTACTTTGGAGCTAGAGCACCACACATTGAGTATCCAGTTAGGACCAATCAAATTCCCCGCGAAGTTCC CCAGCAGCGGTACCCTTCATGGCTTTTGGTTCTAGGTGCTGGCACCCTTCCATTTGGTACCCTTTTCATTGAGCTCTTCT TCATCATGTCAAGTATTTGGATGGGTCGCGTTTACTATGTCTTCGGGTTTCTCTTTATTGTTATGATTCTCCTTGTGGTG GTTTGTGCTGAGGTATCTCTAGTTCTGACCTACATGCACCTCTGTGTGGAGGATTGGAGATGGTGGTGGAAATCATTCTT CGCCTCGGGTTCGGTTGCCATATACATCTTTTTGTACTCCATAAACTATCTTGTGTTTGATCTCAAGAATCTGAGTGGAC CTGTTTCTGCAACTCTTTACCTGGGATACTCACTCTTCATGGTTCTAGCTATCATGTTGGCTACAGGCACAGTTGGGTTC CTGTCTTCATTCTGGTTCGTTCATTACTTGTTCTCTTCAGTCAAGTTGGATTGA
CDS sequence (LotjaGi4g1v0283200.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCTTTTCATGGATTCATGATGTGGGTCTTGGCTTTTTGTTTGGTATTTCAATCTGGGAATGGGTTTTACCTTCC GGGTAGTTACCCACACAAGTATGCTGTTGGTGATGAGTTGTCGGTGAAGGATAGTGCTGAGAATCTCGGTGAACTCCTCA TGGGGGATCGGATCGAGAACTCACCTTACAGGTTCAAGATGTATACCAATGAGTCTGAGGTGTTCTTGTGCAAAGTGGAT AAGCTGTCTGCAGATCAGTTCAAGCTCTTGAAGGAGAGGATTGATGAGATGTATCAGGTGAATTTGATACTTGATAATTT GCCTGCTATTCGGTTTACGAAGAAGGAGGAGTATTTTCTGAGATGGACTGGGTATCCTGTTGGTATCAAGATTCAGGATG TGTATTACATGTTTAACCATTTGAGGTTTAATGTTCTTGTCCATAAGTATGAGGAGAACAATGTGGCTCGTGTGATGGGA ACCGGTGATGCGGCTGAGATGATCCCGCCGATTGGTAAGGAGGGATCTGACAAGCCTGGTTACATGGTTGTTGGGTTTGA GGTGGTGCCTTGTAGTATTATGCATAATGCTAATACGGTTCAGAGCTTGAAAATGTATGAGAAATACACGTCGCCGATCA AATGCGATCCGACCACCGTGGCAATGCCGATTAAAGAAGGTCAACCACTTGTGTTTACTTATGAGGTCACCTTTGAGGAG AGTGATATCAAGTGGCCATCTAGATGGGATGCCTACTTGAAGATGGAGGGAGCCAAGGTCCATTGGTTCTCCATCCTCAA TTCGCTTATGGTGATCACTTTTCTTGCTGGTATTGTTCTTGTTATCTTCCTGAGAACTGTTAGGAGGGATCTGACCCGTT ATGAGGAGCTTGATAAGGAGGCTCAAGCACAGATGAATGAAGAGTTATCTGGTTGGAAGCTTGTTGTGGGAGATGTTTTC CGCGCCCCGTCGAATCCTTCTTTGTTGTGTATAATGGTTGGGGATGGAGTTCAGATTCTTGGGATGGCTGTCGTGACAAT ATTGTTTGCCGCACTTGGATTCATGTCACCTGCCTCTCGCGGAACACTCATCACAGGTATGCTGTTTTTCTATATGATCC TCGGTATTGTTGCTGGCTATGTTGCAGTTCGGCTATGGAGGACACTCGGCTGCGGCGATCACAAGGGATGGGTTTCAGTT GCTTGGAAGGCTGCTTGTTTCTTTCCTGGGATTGCCTTTTTGATCCTGACATCATTGAACTTCCTTTTGTGGGGAAGCCA CAGCACAGGAGCCATTCCATTTTCGCTTTTCGTTGTGCTGATTTTGCTTTGGTTCTGCATTTCTGTCCCCCTTACCCTTG TTGGTGGGTACTTTGGAGCTAGAGCACCACACATTGAGTATCCAGTTAGGACCAATCAAATTCCCCGCGAAGTTCCCCAG CAGCGGTACCCTTCATGGCTTTTGGTTCTAGGTGCTGGCACCCTTCCATTTGGTACCCTTTTCATTGAGCTCTTCTTCAT CATGTCAAGTATTTGGATGGGTCGCGTTTACTATGTCTTCGGGTTTCTCTTTATTGTTATGATTCTCCTTGTGGTGGTTT GTGCTGAGGTATCTCTAGTTCTGACCTACATGCACCTCTGTGTGGAGGATTGGAGATGGTGGTGGAAATCATTCTTCGCC TCGGGTTCGGTTGCCATATACATCTTTTTGTACTCCATAAACTATCTTGTGTTTGATCTCAAGAATCTGAGTGGACCTGT TTCTGCAACTCTTTACCTGGGATACTCACTCTTCATGGTTCTAGCTATCATGTTGGCTACAGGCACAGTTGGGTTCCTGT CTTCATTCTGGTTCGTTCATTACTTGTTCTCTTCAGTCAAGTTGGATTGA
Protein sequence (LotjaGi4g1v0283200.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESFHGFMMWVLAFCLVFQSGNGFYLPGSYPHKYAVGDELSVKDSAENLGELLMGDRIENSPYRFKMYTNESEVFLCKVD KLSADQFKLLKERIDEMYQVNLILDNLPAIRFTKKEEYFLRWTGYPVGIKIQDVYYMFNHLRFNVLVHKYEENNVARVMG TGDAAEMIPPIGKEGSDKPGYMVVGFEVVPCSIMHNANTVQSLKMYEKYTSPIKCDPTTVAMPIKEGQPLVFTYEVTFEE SDIKWPSRWDAYLKMEGAKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVF RAPSNPSLLCIMVGDGVQILGMAVVTILFAALGFMSPASRGTLITGMLFFYMILGIVAGYVAVRLWRTLGCGDHKGWVSV AWKAACFFPGIAFLILTSLNFLLWGSHSTGAIPFSLFVVLILLWFCISVPLTLVGGYFGARAPHIEYPVRTNQIPREVPQ QRYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLFIVMILLVVVCAEVSLVLTYMHLCVEDWRWWWKSFFA SGSVAIYIFLYSINYLVFDLKNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 43 | 43 | 0.0 | ||
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 43 | 43 | 0.0 | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 10 | 18 | 9 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 261 | 238 | - | – | |
| PANTHER | 39 | 629 | 591 | 0.0 | – | |
| PANTHER | 39 | 629 | 591 | 0.0 | ||
| Pfam | 43 | 581 | 539 | 8.2E-182 | ||
| Phobius | 262 | 284 | 23 | - | – | |
| TMHMM | 262 | 284 | 23 | - | – | |
| Coils | 284 | 304 | 21 | - | – | |
| Phobius | 285 | 327 | 43 | - | – | |
| Phobius | 328 | 355 | 28 | - | – | |
| TMHMM | 329 | 351 | 23 | - | – | |
| Phobius | 356 | 360 | 5 | - | – | |
| TMHMM | 361 | 383 | 23 | - | – | |
| Phobius | 361 | 383 | 23 | - | – | |
| Phobius | 384 | 403 | 20 | - | – | |
| TMHMM | 404 | 426 | 23 | - | – | |
| Phobius | 404 | 424 | 21 | - | – | |
| Phobius | 425 | 435 | 11 | - | – | |
| Phobius | 436 | 460 | 25 | - | – | |
| TMHMM | 436 | 458 | 23 | - | – | |
| Phobius | 461 | 485 | 25 | - | – | |
| TMHMM | 486 | 508 | 23 | - | – | |
| Phobius | 486 | 512 | 27 | - | – | |
| Phobius | 513 | 517 | 5 | - | – | |
| TMHMM | 518 | 540 | 23 | - | – | |
| Phobius | 518 | 541 | 24 | - | – | |
| Phobius | 542 | 552 | 11 | - | – | |
| TMHMM | 553 | 575 | 23 | - | – | |
| Phobius | 553 | 577 | 25 | - | – | |
| Phobius | 578 | 596 | 19 | - | – | |
| TMHMM | 595 | 617 | 23 | - | – | |
| Phobius | 597 | 623 | 27 | - | – | |
| Phobius | 624 | 629 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0283200.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…