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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0285600 |
| Transcript ID | LotjaGi4g1v0285600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L10; TAIR: AT5G13510.1 Ribosomal protein L10 family protein; Swiss-Prot: sp|O80362|RK10_TOBAC 50S ribosomal protein L10, chloroplastic; TrEMBL-Plants: tr|A0A1J7HDS5|A0A1J7HDS5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0285600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65798637..65803214) extracted from Lotus japonicus Gifu genome v1.2.
TACATTTCCTACCCCAAACCAAGCAAAGCATCATCCAGATAAGATAAGCCAACCTCAACCCACAATGTCATCTTCTTCTT CTTCTTTTCTCATTTCCCTTCACCACCATGGAAGCCACAGCCAGTGCACTGAGCTTTGCTCTTCCCTCCCCCAAGTCCCA AACCTTCCAAATCCTCAACCGACCCATTAACCCATTCAACCCGGGACCCACCTTCAAACCCCTCCGCCACCGCTTCTCAT CAATCACCGCCGCCATTCCCCGCACCAAGAAGGAGGAAACAGTCGACAGCGTCAGGAAGCAGCTCGAGAATTGCTACCTC CTCGCCGGAATCAACTACAAAGGCTTCACCGTCAAGCAGTTCCAGGAGCTTCGGAAAACGCTCCCCGAAACCACGACGCT GATTGTCGCGAAGAACACGCTGGTGTATAAGGCGGTGGAGGGAACCGAGTGGGAGACGCTGAAGCCGTGTATGAAGGGGA TGAATGTGTGGCTGTTTGTTCACACGGAGGAGATTCCGAAGGCGATTAAACCCTACAGGGATTTCCAGAAGGAGAAGAAG CTTGATGAGAATGATTTCACTGGTGCGGTTTTTGAAGGGAAATTCTATGGTCCTAATGAGTTCAAGAAGCTTGAAACATT GCCTACTCGTGCTGAGATTTATGCAAATTTGTTGGGATCGTTGAAGAGCCCTGCTTCTGCTTTGGTCAGCACGCTTCAGG CACCAGCTAGGGAGCTTGTCATGACTCTCAAGGCACATGTGAAGAATCTCGAAGAACAGGCGGCGCAATAGATAAGTTTT CAATGTTGTTTTGTTTTGATTTAGTTGAATATTTATATGCCTTTTGTTTATTGCATTTGAGCTGGTTTGTTTATCCTGTT AATGTGTATGATGTGTTTAGAATGATGCAAAGTTTAACTTTTTGCTGTTAGAGTAGGGATGGATGCTTTGAAAACTTGTT CCCACTGAATGATGCAATTTCACTGGTTATTGGTTATTCAGTGCACAGAGCATTGAGCTGTTGTTTTTCTCCCTTTGTTT ATTGAAGTGCTGGGATTTTGTATAGCCTGACATAGTTTTGATTTTGGTTGATGGAGTGAGGCATTCTGTAGAGGGAGCTT ATGGCGCTTATTGTATTAACATTTGTTCTTAAGCTAATTTATGAAACTTACTGAAATAAGCTCAAAATATATTATAGGTA GGTATAAAGCGCTTATTCATTAGCTAATTTGAGCAGTTTATGGGAAAAGATCAAAACTCAAAAGAGCTTATATGTAAGAT CATAAACTATTTACATAAACTCTTCCAAACACTTGCATAAGCACTAATGCTATAAGAGAAGCTCAAATAAGCTCTTCCAA ACGAGGTTAATCATTCTTGTGTAAGTATGGACTTTGAAGTTCAATTTGAGGTCATTCTCATCAAATTGATAGGTTATTGG CAAATGCACCATGTTATACTGGACATTGTCATTGAGTGTGTTCTGACTTCTCATCAAATGAGTTTGTCCCAGTTGTAGCT ACATTTTGTGAGAGAAGGAGTTGAAATAGGAAGTAAACATAAATGTTAAAACTTGGCCAATTTTTTCGGGAAGGTCATTC CATCTTACTGTCTTCCTTCACATTCTAAAGTGTCTGCATGCTTTTTGAAGTATGCTTGGTATATAGCATGAACAATCCCA CTTTCTTGAACATACTTCATACCTATGAGTCTAACAAAAATGACTTGGATCAAGAACACCCCCACCCTATTCTCTTGACT AACCAGGACTTCATTATTGCAATCCTCAACAAACTAAAGCTGTAAGAGGATGCAACCGTTGTTGCTGAGTACCATCCCTC TTTTAAGCTTACCAGAACATTTGGAAACTCAATGCTTCATGATTCAGAAAGCTGAATTAGCTGTCATATCAATCATATTT CCATGAAAGCAACAAAATTTAGGTGTAATAAAAAATAATCCTGAACTGAAAAGTGGAAACCCAAGTAAAATACAGAAACT CACTTCCTAGTTCGTAATTTCGTATCACTTACTTCTGAGCATGATTGCACATGATAAACTGTTAACACGGATACAACATC ATTGTTGTCCAAATTTCATGAAAATGAATTCTGGTTATGGAACATACAACCAATTCCATGTATTAAGGTTTAGAGGAATG CTATGTAAGCAATACTCTGTATACAAACACTCGAGCTTTGTTTCTTGATGTTTGTAATGTTATTTCAAATTTGCGTACAA ATGTACATGCAATCCAATGACTATTTAATTATTGTTTATTTGGAAAACTAGAAATTTTTGTTCTACTCTGTGTATAACTC TTCTTAAGAAGAGGATTTTACATTTTAGTTTTATCACTAAATTGCAGAATTGATAGCATTCTTTTTATGATTTATTCTCT CACTTTTAACTAATAGACTTTGTTAGGCTCCAATCCTGTCTTTATCTTTCCAGTGAGCACTGAAGTATAAGTAACTGGCA GAGATAACTGTTTTTAGTAACTGATTCTGAATTCTAAACCAGAAGCATCAAATTCTTTAAACTATTAGAATATTAAACTG TACATTTTGTAAGTAACAAATAATGAGTTCATATTAGATTTTTCATTTTTTAATTATATATATACTGCATGAAATGTGCT AATTAGCGTTGACTTAGTGTCAATGCCGTGACTAACGTTAAATGGATTGTAGCTAAAGGTTTAGAGTCTATCATCACAGT TTAGAATCGATGCATACTGATGCACCCCACTTGGCATTTCAGGCAATGCAAATTCATTAACATTAGCATTGGTTGGTCGT ATAGACCAACTTCACAATGTGTACGCTTGGTCAACACTAGTGACGTAGAAAACCATAATGTTATGTCGCCCATGGCCGAT GCTAATATTGGCTGTCAATGCAAAATTGACGATGAGGAACAGCCCTTTGTTCACAGTTTATAAGCACTAGTTTGGTCACT CTCGGCTGAGGCAAGCAATTTTCTGACTTAGAGTTATCATGCTTAGTATCTCCAAGTTAAGGGTTTTGCTTGCCTAGCAT GAGAGTGCCAAATAACAGACCCAATTGCTAGCATACGATGTAAGTTATCACCAAATTTGCATTGACATCCAACAAAATAA AAGGTAATCTACATATAGGAGCGTATCCATGATGTTTTTCTGGGGGCCGAAATTAAATAATAAAAAATTGGCGTAATTGC ATTTTTTTCCTTCCTGAAGTATTACGATTGTGCGATTTGACTCCCTGATCTTCAAAACGAGCGACTTGGGTCTTGAAAAT TTTAATTTGTGCAAATCAAGTCCCCTCCGTCAAGTTACCGTCCAATTGCAAACGGAATATGCATGCGTGGCACTCATTAA TGATGTGGTTCTAACGCATTTGCCACTAGGATGCCACGTAAGTAAATAAATAAAGAATAAAATCAATGATAATTCTAAAA AATAAAAAAATATCTAATCTTCAACTATAGTCATCTTCAATGAATCAACAACACAAAATCTGGAAACAGATTCAGAAGAT CAAGAAATTCATGAACAAGAAAAAATAGAAATTCCACAAGCAAAAATCAACATTTACCCTTCCTTCAACCAAATCCAAAA ACAACAAAACTATTCAGAAAGAAAAAGAAATCTAACATCAACTACAAACCTCTTCCTTCTTCCTATTACCCAGAAACCAA CCCCACAATCCCGATCCCCTTACCCAGATTGCAGCAGCCAGCACAAAACCAACTTCCTCACCACACAACCGACCACCAAG CTCCTTCTTTTCACCATGGATGCAAGCTTCGCCATCTCATCACCATCATCTGGGTAAACCCATAAAAGCAACAATGGGGG AGAGAGAGACAAGGCAATGGTGAAGAGGGAAAAGAGGATATTTGGGAAGGGAAGAATTTTTCAGATCTGGGAAGGATGGT CGACGGCGAAGCTGGATTGGGCGCCGACGAGGCAGCACCACCACCACTACTGCACCACCAATTCTTCTACCTCATACTCC TCTTCCATCGCACCCCCACAACTATTGCACTACCAACTCACTCTCCTTCGCACGCGATGGTTTCTCCTTCGCCTTCAGCT CCCCGGAATTCTTCCCTTTCATGAGCCCCGACACCCCGTCACCGTCTTGACCTCGCCGACATCGTCCAGAAGAAGATTGG ATTAGGGATTTTGGTGGTGGGAGTCTAGCAGATTTGAGGATGGGGTTAAGGATTTTTGTTTTATGGAATCAGTTTTCTAG GTAGGGATTTTATTATTATTATTATTATTTCATTTTTTATTTATTTTCTTTAATTTTATTAATGGCATGACAGACCAAGT GGAATGCGTCAGAGCCACATCATTAGTAAGCGCCACATCATTAGTAAGCGCCACATATGCGAATTCTGTTTGCAATTGGA CGACAACTTGACGGAGGGACTTGATTTGCACAAATTAAAAATTGCAGGATGCAAATTGCTCATTTTAAAGATCAGGGAGT CAAATCACACAATCGTGTTGCTTCAGGCACGAAAAATGCAACTAAGCCTAAAAAATTATCCAATGAATATTTATATACTA TAAATAAGTAAATTTTAT
CDS sequence (LotjaGi4g1v0285600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCCACAGCCAGTGCACTGAGCTTTGCTCTTCCCTCCCCCAAGTCCCAAACCTTCCAAATCCTCAACCGACCCAT TAACCCATTCAACCCGGGACCCACCTTCAAACCCCTCCGCCACCGCTTCTCATCAATCACCGCCGCCATTCCCCGCACCA AGAAGGAGGAAACAGTCGACAGCGTCAGGAAGCAGCTCGAGAATTGCTACCTCCTCGCCGGAATCAACTACAAAGGCTTC ACCGTCAAGCAGTTCCAGGAGCTTCGGAAAACGCTCCCCGAAACCACGACGCTGATTGTCGCGAAGAACACGCTGGTGTA TAAGGCGGTGGAGGGAACCGAGTGGGAGACGCTGAAGCCGTGTATGAAGGGGATGAATGTGTGGCTGTTTGTTCACACGG AGGAGATTCCGAAGGCGATTAAACCCTACAGGGATTTCCAGAAGGAGAAGAAGCTTGATGAGAATGATTTCACTGGTGCG GTTTTTGAAGGGAAATTCTATGGTCCTAATGAGTTCAAGAAGCTTGAAACATTGCCTACTCGTGCTGAGATTTATGCAAA TTTGTTGGGATCGTTGAAGAGCCCTGCTTCTGCTTTGGTCAGCACGCTTCAGGCACCAGCTAGGGAGCTTGTCATGACTC TCAAGGCACATGTGAAGAATCTCGAAGAACAGGCGGCGCAATAG
Protein sequence (LotjaGi4g1v0285600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEATASALSFALPSPKSQTFQILNRPINPFNPGPTFKPLRHRFSSITAAIPRTKKEETVDSVRKQLENCYLLAGINYKGF TVKQFQELRKTLPETTTLIVAKNTLVYKAVEGTEWETLKPCMKGMNVWLFVHTEEIPKAIKPYRDFQKEKKLDENDFTGA VFEGKFYGPNEFKKLETLPTRAEIYANLLGSLKSPASALVSTLQAPARELVMTLKAHVKNLEEQAAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 227 | 208 | - | – | |
| PANTHER | 41 | 224 | 184 | 8.3E-74 | ||
| Gene3D | 50 | 215 | 166 | 2.7E-33 | ||
| Hamap | 50 | 210 | 161 | 18.443 | ||
| SUPERFAMILY | 51 | 219 | 169 | 4.71E-46 | ||
| CDD | 52 | 208 | 157 | 4.57235E-48 | ||
| Pfam | 52 | 146 | 95 | 5.7E-20 | ||
| Coils | 211 | 227 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. |
Expression pattern of LotjaGi4g1v0285600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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