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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0286100 |
| Transcript ID | LotjaGi4g1v0286100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT2G33680.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680; TrEMBL-Plants: tr|G7JGU3|G7JGU3_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi4g1v0286100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65824685..65830329) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAAGAAAAAGTTTGGTGTTCTTTTAATTAATTTCATTTCCTCCCTCACCCCGTGTATTGATTGACAATAAGAATGTG ATAGAGATCAGAACAATTGTATTATCTGATGCCTGAATACCCATTTGAAATGTGGTTCTCAAGGCTCTTAAAATGTTTCA TAGAAGATGTACACGAACCCATCAGACTGCAAGTCTATAAGCATGATCAATAAAAATACAAAATAAAGACAACTAAGCAA TGAATCATGACTAAAATGTCAGCAATGAAATTTTGCATAGATACTGATTCCAGAACTTAATCTAGTCTTGAGGGAATGTG AATTAAAATAGGAACTAACCAACATAATCTGACCGGTCAAGCATATCCACTAAAGTCATCCTCCTTGGAAACCTTGGTGG CAGCCTCAAGATCATGGAATCTTCTATCTCAATAGGTAAATGAGTCGCCACAATCACAATGCCTCCTTGTTTCCTGTGCT CTGCAATAATGTACTCAAGTAACCTCACACCTTCATCATCTAATGCAACTGAAGGCTCATCCAGCAACCATATGGGGCGA TCAATCGCGAGCAATCTTGCAAGTTGCAGCCTTTTCCTTTGTCCCATAGATAGCATCCTTGGCTTTTCGTTGGCCAATCT TCCCAGTCCCATCAACTCAAGTGCAGGCAAAGCCTTCCCGTACTTGTTTTCCAGAGTTTCAAACCATCGGACATTTTCAA CAACTGTAAGCCTACCATCGATGGCATCCTTGAGAGAGAGCCAGTTAAGCTGAAGCTTATACTGATGGAAGATTCCAGAG TCTTGAGTGTTATGGCCATTCCAAAGGATTTCACCTGCAGAAGGACGGGAGAACCCGGCTAACATGCGCAAGAAAGTTGA CTTTCCAGAACCATTTGCACCGGTTAGCACGAGGGCTCCTCCATCATGAAGAGAGACATTCACATGACGCAGAACTTGCT GCGCATTTCTCATGCAAGAGACATTGTTAAGGAGGAGCCGAGGGAAGGGGGTGGCTCTAGCAGACATCTAGTTTAACAAT TCAAAACAGGAACCCACTGTCAATATGCAGAAATTCAGATAAATGATCTCTGATCCTTTACTTCCCGTTGATGATGCAAT TAGTGCAACTCATAGAGCATCCTTGAGCACAATTTTACTGTAAAATAAAATAGAACAAATTATTAGAGAAATGAAACCAA TCAAAGATGTAAAAAAGAAAAGCCAATAACCTAGACAAGTGTACAGCTTTGTATGAACTCATTCAACTATCAGTATTATC TCACTGATCATAATTTACAATAGAAAAGCAGCACAAGCACTAATACAAATTTTACGAAAGTCTGTGTCTCTCAGCTTGAT CACAAGTGGTTCAAGCATTTCATCGAACACTAAGACTACAAGCATACCAAAACAAAATGGTACTCATCCTTAAAGTGGTT CTAGGAGACTAACAGCACCCATTACAAATCTTAAAGCCCCAAAATGTAGAACCCAGGAAGCATGTTAAAAATATTTAAAA AAAAAATCAAAATGTTGTGAATTAAAGAAGACTAGAAGAGTAACATTCTATTCCCTACAAATCCATATTTCTGTCTCACC TCACACTATAGCTACAGCAACAACAAACGAAAACTGAACAAATGAAAGTGAAAGCAGCAGGAAGAGACAACGAACCTGGG GTGTTGGGGAGAAGGAAATAGCTAGAGGAGCTTTTAGCTTCATTCCCTAACCCTATGAGAAGAAAAAAATATAGAATGAA AAAGTAAAAAATTACATTTATATATTACGTACCATAATTTAATTTAAAATAAATATTATATATGGGCATGTGAAAATTCA ATGGAATAACACATAGCAATTTTAGTATACTGAATACTGATTAGGAGAGTTTGTGAGTGAGTAATGCTAAGGGCGAAGGT TTTTGACGAAGGCATAGCCGTAGCAACATCATCGGCAGCATCATCATCATCATCATCATCATCATCATCGTCACGACAAA TATTGACAGAACTCATCAACCTCACAAACCTTAAAGACCTACGCAAAGGTCGAAAACTCCACGCTCACATCCTCAAAAAC GGTTCATTCATCTCCTCCACATACCTCGCCAACACCCTCCTCAACTTCTACGCCAAGTGCGCTTCCCTCTCCGACGCCAA CCTCCTCTTCCAAACCATCGTCGGCCACCGCATAGACGACGTCGTCTCATGGAACTCCCTCATCAACGCCTCACAACACC GCGCTCCTTCCTCCGCCATCCACCTCTTTCAACGCATGATGCGCTCCCATAACGCCCTCCCCAATGCCCACACCTTCGCC GGCGTGTTCTCCGCCGCTTCTAGTCTCTCCGATGTCGTTGCCGGCCGTCAGGCGCATACCGTTGCAGTCAAAACCGCCTG CTCCGGTGATGTGTTTGTTGGGAGCTCCATGCTTAATATGTACTGCAAGACGGGTCTTGTCTCGGAAGCTCGCAAGCTGT TCGACAGAATGCCGCAGAGGAATACTGTTTCTTGGGCTACCATGCTTTCTGGGTATGCTTCTCTGGGGCTTGCTAAGGAG GCGATCGAGCTCTTTGAACAAATGCGTTGTGAAGAAGAGGAGGGTGAGAATGAGTTCGTGCTCACCAGTATTCTTAGTGC CTTGAATAGAACTGAGTTTTTGGATACTGGTAGACAAGTTCATTCCCTTGCCATGAAAAATGGGTTGCTTTCTATTGTTT CTGTTGCCAATGCTCTTGTGACGTTGTATGCGAAATGTGGGAGCTTGGATGATGCGCTTAGGACTTTCGAATTTTCGGGT AACAAGAATTCGATCACGTGGTCGGCCATGGTTACTGGTTATGCACAGAGTGGGGACTCGGAGAAAGCGTTGAGGCTGTT TCACAGTATGCATTGCTCTGGTGTGTTGCCTAGTGAGTTTACTCTTGTTGGGGTGATCAATGCTTGCAGCGACCTTTGTG CTATTGTGGAAGGGAGACAGATGCATGGTTATTCCTTGAAGTTGGGGTTTGGATTGCAATTGTATGTTTTATCATCATTG GTGGACATGTATGCAAAATGTGGTAGCTTAGCGGATGCTCGGAGGGGTTTTGAGTATGTACAACAACCTGATGTTGTTTT GTGGACTTCTATCATAACCGGGTATGTACAGAATGGGGATTTTGAAGGTGCTCTAAATCTGTACGGCAAAATGCAGATCG AGAGAATTATCCCCAATGAGCTAACTATGGCTAGTGTCCTTAAAGCTTGTTCCAGCCTAGCTGCTTTAGATCAGGGAAAG CAAATGCACGCCGGGATTGTTAAGTACGGTTTCAACTTAGAAGTTCCCGTTGGAAGTGCACTTTCTGCTATGTATGCTAA ATGTGGAAGTTTGGATGACGGTTATCTTATTTTTTGGAGGATGCCTACCAGGGATGTAATTTCCTGGAATGCAATGATAT CTGGTCTTTCTCAGAATGGTCATGGTAACAAAGCCTTGGAACTGTTTGACAAGATGTTGTTGGAGGGAACAAAGCCTGAT ACTGTCACATTCGTGAATCTTCTCTCCGCTTGTAGTCATATGGGACTGGTAGACAGAGGCTGGGATTATTTCAAGATGAT GTCTGATGAGTTTGACATTACTCCAACAGTAGAGCATTATGCTTGCATGGTTGATATCCTGAGCCGTGCCGGTAAGCTCA ATGAAGCTAAAGAGTTCATTGAATCAGCAGAAGTTGATCATGGTCTATGTTTGTGGCGCATATTATTAGGGGGCTGTAGG AACCATCACAATTATGATATTGGTGCTTATGCTGGTGAGAAACTAATGGAGTTAGGCTCACCAGAATCATCTGCTTATGT ATTGTTATCAAGTATATATACAGCCTTAGGTCAGTGGGAAGACGTAGAGCGTGTAAGGAGAATGATGAAAGCTCGAGGGG TAGCTAAAGAACCTGGTTGTAGTTGGATTGAGTTGAAGAGTTTGGTTCATGTATTTGTTGTTGGAGACAGTATGCACCCA CAAATTGATGAAATACGGTCAGAACTAAGGTTGTTAACCAAATTGATGAAAGATGAAGGATACCAACCCCATTTGGATTC ATTGCCTGAAAGTGAAACTACAGGAGATGATTTGGGAGGTATTATTTGACTAGTGTTCCCATTCTTTACCTGTCAATTTT TCCAATTAATCAGTAGAGTGATTTTTCATTTGTTGTATGGGTTAGTGTATGGTTTATACTGTTAAGAAAAGCGTCTTAGG CTCTTAGCAACTATCTTGGGATAAGTACAATGAGCATCTGGACCACCATCTCTTGTCTTTAAACTTATTTGTGCCTTCTG CCTGCTTGCATTTTCTTTAGGAATATATATTGGTTTTAATAGAGACAGTCTCAACTTTTGTTATAATTCTTTACTTCTTT TTTCCCTGTATTTTCATGTTCTTTTATTCATGTAGACCAAGAAGGCAGCCACGAGATACAACTTAGAGTTTGTGGTGGCG TTTAGCAATAATGGGGAGACGATCCACGCATGCACAATGTAAGACTGTAATGTTCACTCTAATCAGAAAACCCTCTATCA ATTCTTTGACTGAGATTCTGGGAAGATGACTCTTTTACATTTTTTTTAAGAAATTCATAATCTAAAGTGCATTTGATCAT TCTTTTTCTTAGGTATAGAAGTAAGCTTGTGTTAAAGAATAACTGGATGTTAGTCATGTTACCAATTCCAATGCTTCCTC TTATAGAAAAAAATCCTGAAATTTTTGTTACCGAATTCTTGTTTTCTATCATTTGGTAAAACTATATTCTTACCTGTGGT ATATTCCTTTTCAGGATGCCATTTCCCCAGAGTGTTACACTAAGTGTAGCAGTGTTGCTATCTTATATTTTTTTGCTGGC TAATTAGCTATGAGAGGATTGCCACCCATCAAGAAGGAATGTTTCAAAATCTAGCCAGCAGCCAAAATATTCAAGCTGTG ATGGACATGTGCATGCGAGTTCATTAGTCATGCTGTTTTTGGGTTTGATACCGGCATGAATCATGATCAGTATCCAAACA GTGGTCAGAAGTCATTTAATCCGCTTGTCCCAGTGAGAGGGAGTGGACAACCAGCTAACAATTATATGTACTTGCTTGAA TTCCGATTAGTATTGCGTTTGACTCATTTGCACTTCAGAGTTCAGACAACCTTGTGTGTTCGCAACATCTTAGACTCCAA GGTGTTCTTTTGGGTTGCAGCCTCAAGATGACAAGGGGTAGTTGCACCATCATAGACCATAACATCATAAGACGTAAGAC ACAGGGAAAACTTCTGGAAGTCAATGATTCAATGGCATGGACAGAGTTCCAGAAGTACACATGAATTGGTTAGACAAAGC TAAAATTGGGTTCCTTGACTTTCAAATTGCTAGGTTTAAATATCAAGTTACTGAATGAAGGAAATATTCATTTTGCGAAA GTCTACTACATTGTTTGAATCCATGGATCATTATTTTATTTATTTTCAATATTCACTTGCTGTCTCATTTTTACTCTTGG TCTTCTCTAGTAATAGCTCTCTCTTCATACTGGGTTTTGGCATGTCCTTCACTTTTTCTTTGATGCTTTTATTTTCGAGA CCTAGCTGGTTTTGTCGGAGATGCTGTGATGGAGGTCAACCACGG
CDS sequence (LotjaGi4g1v0286100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTAAGGGCGAAGGTTTTTGACGAAGGCATAGCCGTAGCAACATCATCGGCAGCATCATCATCATCATCATCATCATC ATCATCGTCACGACAAATATTGACAGAACTCATCAACCTCACAAACCTTAAAGACCTACGCAAAGGTCGAAAACTCCACG CTCACATCCTCAAAAACGGTTCATTCATCTCCTCCACATACCTCGCCAACACCCTCCTCAACTTCTACGCCAAGTGCGCT TCCCTCTCCGACGCCAACCTCCTCTTCCAAACCATCGTCGGCCACCGCATAGACGACGTCGTCTCATGGAACTCCCTCAT CAACGCCTCACAACACCGCGCTCCTTCCTCCGCCATCCACCTCTTTCAACGCATGATGCGCTCCCATAACGCCCTCCCCA ATGCCCACACCTTCGCCGGCGTGTTCTCCGCCGCTTCTAGTCTCTCCGATGTCGTTGCCGGCCGTCAGGCGCATACCGTT GCAGTCAAAACCGCCTGCTCCGGTGATGTGTTTGTTGGGAGCTCCATGCTTAATATGTACTGCAAGACGGGTCTTGTCTC GGAAGCTCGCAAGCTGTTCGACAGAATGCCGCAGAGGAATACTGTTTCTTGGGCTACCATGCTTTCTGGGTATGCTTCTC TGGGGCTTGCTAAGGAGGCGATCGAGCTCTTTGAACAAATGCGTTGTGAAGAAGAGGAGGGTGAGAATGAGTTCGTGCTC ACCAGTATTCTTAGTGCCTTGAATAGAACTGAGTTTTTGGATACTGGTAGACAAGTTCATTCCCTTGCCATGAAAAATGG GTTGCTTTCTATTGTTTCTGTTGCCAATGCTCTTGTGACGTTGTATGCGAAATGTGGGAGCTTGGATGATGCGCTTAGGA CTTTCGAATTTTCGGGTAACAAGAATTCGATCACGTGGTCGGCCATGGTTACTGGTTATGCACAGAGTGGGGACTCGGAG AAAGCGTTGAGGCTGTTTCACAGTATGCATTGCTCTGGTGTGTTGCCTAGTGAGTTTACTCTTGTTGGGGTGATCAATGC TTGCAGCGACCTTTGTGCTATTGTGGAAGGGAGACAGATGCATGGTTATTCCTTGAAGTTGGGGTTTGGATTGCAATTGT ATGTTTTATCATCATTGGTGGACATGTATGCAAAATGTGGTAGCTTAGCGGATGCTCGGAGGGGTTTTGAGTATGTACAA CAACCTGATGTTGTTTTGTGGACTTCTATCATAACCGGGTATGTACAGAATGGGGATTTTGAAGGTGCTCTAAATCTGTA CGGCAAAATGCAGATCGAGAGAATTATCCCCAATGAGCTAACTATGGCTAGTGTCCTTAAAGCTTGTTCCAGCCTAGCTG CTTTAGATCAGGGAAAGCAAATGCACGCCGGGATTGTTAAGTACGGTTTCAACTTAGAAGTTCCCGTTGGAAGTGCACTT TCTGCTATGTATGCTAAATGTGGAAGTTTGGATGACGGTTATCTTATTTTTTGGAGGATGCCTACCAGGGATGTAATTTC CTGGAATGCAATGATATCTGGTCTTTCTCAGAATGGTCATGGTAACAAAGCCTTGGAACTGTTTGACAAGATGTTGTTGG AGGGAACAAAGCCTGATACTGTCACATTCGTGAATCTTCTCTCCGCTTGTAGTCATATGGGACTGGTAGACAGAGGCTGG GATTATTTCAAGATGATGTCTGATGAGTTTGACATTACTCCAACAGTAGAGCATTATGCTTGCATGGTTGATATCCTGAG CCGTGCCGGTAAGCTCAATGAAGCTAAAGAGTTCATTGAATCAGCAGAAGTTGATCATGGTCTATGTTTGTGGCGCATAT TATTAGGGGGCTGTAGGAACCATCACAATTATGATATTGGTGCTTATGCTGGTGAGAAACTAATGGAGTTAGGCTCACCA GAATCATCTGCTTATGTATTGTTATCAAGTATATATACAGCCTTAGGTCAGTGGGAAGACGTAGAGCGTGTAAGGAGAAT GATGAAAGCTCGAGGGGTAGCTAAAGAACCTGGTTGTAGTTGGATTGAGTTGAAGAGTTTGGTTCATGTATTTGTTGTTG GAGACAGTATGCACCCACAAATTGATGAAATACGGTCAGAACTAAGGTTGTTAACCAAATTGATGAAAGATGAAGGATAC CAACCCCATTTGGATTCATTGCCTGAAAGTGAAACTACAGGAGATGATTTGGGAGACCAAGAAGGCAGCCACGAGATACA ACTTAGAGTTTGTGGTGGCGTTTAG
Protein sequence (LotjaGi4g1v0286100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRAKVFDEGIAVATSSAASSSSSSSSSSSRQILTELINLTNLKDLRKGRKLHAHILKNGSFISSTYLANTLLNFYAKCA SLSDANLLFQTIVGHRIDDVVSWNSLINASQHRAPSSAIHLFQRMMRSHNALPNAHTFAGVFSAASSLSDVVAGRQAHTV AVKTACSGDVFVGSSMLNMYCKTGLVSEARKLFDRMPQRNTVSWATMLSGYASLGLAKEAIELFEQMRCEEEEGENEFVL TSILSALNRTEFLDTGRQVHSLAMKNGLLSIVSVANALVTLYAKCGSLDDALRTFEFSGNKNSITWSAMVTGYAQSGDSE KALRLFHSMHCSGVLPSEFTLVGVINACSDLCAIVEGRQMHGYSLKLGFGLQLYVLSSLVDMYAKCGSLADARRGFEYVQ QPDVVLWTSIITGYVQNGDFEGALNLYGKMQIERIIPNELTMASVLKACSSLAALDQGKQMHAGIVKYGFNLEVPVGSAL SAMYAKCGSLDDGYLIFWRMPTRDVISWNAMISGLSQNGHGNKALELFDKMLLEGTKPDTVTFVNLLSACSHMGLVDRGW DYFKMMSDEFDITPTVEHYACMVDILSRAGKLNEAKEFIESAEVDHGLCLWRILLGGCRNHHNYDIGAYAGEKLMELGSP ESSAYVLLSSIYTALGQWEDVERVRRMMKARGVAKEPGCSWIELKSLVHVFVVGDSMHPQIDEIRSELRLLTKLMKDEGY QPHLDSLPESETTGDDLGDQEGSHEIQLRVCGGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 12 | 150 | 139 | 3.3E-13 | ||
| PANTHER | 34 | 155 | 122 | 7.4E-148 | – | |
| ProSiteProfiles | 65 | 95 | 31 | 5.59 | ||
| ProSiteProfiles | 99 | 133 | 35 | 6.248 | ||
| Pfam | 101 | 128 | 28 | 0.09 | ||
| Gene3D | 151 | 244 | 94 | 2.9E-18 | ||
| PANTHER | 153 | 260 | 108 | 7.4E-148 | – | |
| ProSiteProfiles | 169 | 203 | 35 | 10.435 | ||
| Pfam | 174 | 200 | 27 | 6.8E-6 | ||
| TIGRFAM | 175 | 199 | 25 | 9.5E-5 | ||
| Pfam | 202 | 229 | 28 | 4.9E-6 | ||
| TIGRFAM | 202 | 230 | 29 | 5.2E-5 | ||
| ProSiteProfiles | 204 | 230 | 27 | 6.577 | ||
| ProSiteProfiles | 236 | 270 | 35 | 6.401 | ||
| Gene3D | 245 | 363 | 119 | 2.1E-7 | ||
| PANTHER | 255 | 359 | 105 | 7.4E-148 | – | |
| ProSiteProfiles | 271 | 301 | 31 | 5.831 | ||
| Pfam | 276 | 296 | 21 | 0.81 | ||
| Pfam | 301 | 349 | 49 | 3.0E-10 | ||
| ProSiteProfiles | 302 | 336 | 35 | 12.54 | ||
| TIGRFAM | 304 | 337 | 34 | 1.3E-8 | ||
| PANTHER | 352 | 461 | 110 | 7.4E-148 | – | |
| ProSiteProfiles | 372 | 402 | 31 | 5.853 | ||
| Pfam | 402 | 450 | 49 | 2.4E-10 | ||
| ProSiteProfiles | 403 | 437 | 35 | 11.093 | ||
| TIGRFAM | 405 | 439 | 35 | 9.6E-7 | ||
| ProSiteProfiles | 438 | 472 | 35 | 6.358 | ||
| Gene3D | 450 | 552 | 103 | 1.3E-20 | ||
| PANTHER | 455 | 669 | 215 | 7.4E-148 | – | |
| ProSiteProfiles | 473 | 503 | 31 | 5.338 | ||
| Pfam | 504 | 551 | 48 | 6.5E-13 | ||
| ProSiteProfiles | 504 | 538 | 35 | 12.649 | ||
| TIGRFAM | 506 | 540 | 35 | 8.3E-9 | ||
| ProSiteProfiles | 539 | 569 | 31 | 8.199 | ||
| TIGRFAM | 541 | 575 | 35 | 0.0028 | ||
| Gene3D | 553 | 682 | 130 | 3.5E-11 | ||
| ProSiteProfiles | 575 | 610 | 36 | 7.059 | ||
| ProSiteProfiles | 641 | 675 | 35 | 7.991 | ||
| MobiDBLite | 721 | 742 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0286100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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