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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0287000 |
| Transcript ID | LotjaGi4g1v0287000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Non-specific serine/threonine protein kinase; TAIR: AT4G30960.1 SOS3-interacting protein 3; Swiss-Prot: sp|O65554|CIPK6_ARATH CBL-interacting serine/threonine-protein kinase 6; TrEMBL-Plants: tr|A0A0L9TQR6|A0A0L9TQR6_PHAAN Non-specific serine/threonine protein kinase; Found in the gene: LotjaGi4g1v0287000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65933179..65934471) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGACAAGTGTTGCAGCAACGAAGCTCACTCTGCTGTGCTTCAAGGCAAGTACGAGCTGGGTCGGGTTCTCGGCCA CGGAACATTTGCCAAGGTGTACAACGCGCGGAACCTGAAAACAGGGAAGAACGTGGCCATGAAGGTTATAGGGAAGGAGA AGGTGATCAAAGTAGGGATGATGGAGCAGATAAAGAGAGAAATCTCCGTGATGAAGATGGTGAAGCACCCCAACATCGTC GACCTCCATGAAGTCATGGCCAGCAAGTCCAGGATCTACATCGCCATGGAGCTCGTCCGCGGCGGCGAGCTTTTCAACAA GGTCGCCAAAGGCCGCTTGAAGGAGGATCTCGCTAGAGTTTACTTCCAGCAGCTCATCTCCGCCGTGGACTTCTGTCACA GCCGCGGCGTCTACCACCGCGACCTCAAGCCGGAGAATCTCCTCCTCGATGAAGACGGTAACCTCAAGGTCTCTGACTTC GGCCTCTGCACCTTCTCCGATTTCGGACTGTTACACACCACGTGCGGCACGCCGGCGTATGTCTCGCCGGAGGTGATTGC GAAGAAGGGCTACGACGGCGCCAAGGCGGATATATGGTCTTGTGGGGTCATCCTCTACGTGCTCCTCGCAGGGTTTTTGC CGTTTCAGGATGACAATTTGCTCGCCATGTACAAGAAGATTTACAGAGGAGACTTCAAATGTCCACCATGGTTTTCTTCT GACGCGAGAAGGCTCATCACGAAGCTTCTAGATCCGAACCCGAACAGTAGAATCACGATCTCCAAGATCATGGAATCATC CTGGTTCAAGAAGCCAGTTCCCAAGAGCGTGCAAGCGAGGAAGGAGGAAGAACGGGAAGAGGGGTGGGAGTGTGAGAAGA AGATGAAGGAACCAGCGACGATGAACGCGTTTCATATAATTTCTCTGTCGGAGGGGTTTGATTTGTCGCCGCTGTTTGAG GAGAAGAAGAGGGAGGAGAGGGAGGAGATGAGGTTCGCGACGGCGGGGACGCCGAGCAGGGTGATTTCGAGGCTGGAGGA GGTGGCGAAGGCGGTGAACTTTGATGTTAAAAGTAGTGAAAGCCAAGTGAGGCTTCAGGGGCAGGAGCGTGGGAGGAAGG GGAAGCTGGCGATTGCGGCGGATATTTACGCCGTGACGCCGTCGTTTCTGGTGGTTGAAGTGAAGAAGGATAATGGTGAC ACCTTGGAGTATAACCAGTTCTGTAGTAAACAGCTTCGGCCTGCGCTCAAAGACATCTTCTGGACTACCCCTGAGAATTC AACACCTGCTTAG
CDS sequence (LotjaGi4g1v0287000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGACAAGTGTTGCAGCAACGAAGCTCACTCTGCTGTGCTTCAAGGCAAGTACGAGCTGGGTCGGGTTCTCGGCCA CGGAACATTTGCCAAGGTGTACAACGCGCGGAACCTGAAAACAGGGAAGAACGTGGCCATGAAGGTTATAGGGAAGGAGA AGGTGATCAAAGTAGGGATGATGGAGCAGATAAAGAGAGAAATCTCCGTGATGAAGATGGTGAAGCACCCCAACATCGTC GACCTCCATGAAGTCATGGCCAGCAAGTCCAGGATCTACATCGCCATGGAGCTCGTCCGCGGCGGCGAGCTTTTCAACAA GGTCGCCAAAGGCCGCTTGAAGGAGGATCTCGCTAGAGTTTACTTCCAGCAGCTCATCTCCGCCGTGGACTTCTGTCACA GCCGCGGCGTCTACCACCGCGACCTCAAGCCGGAGAATCTCCTCCTCGATGAAGACGGTAACCTCAAGGTCTCTGACTTC GGCCTCTGCACCTTCTCCGATTTCGGACTGTTACACACCACGTGCGGCACGCCGGCGTATGTCTCGCCGGAGGTGATTGC GAAGAAGGGCTACGACGGCGCCAAGGCGGATATATGGTCTTGTGGGGTCATCCTCTACGTGCTCCTCGCAGGGTTTTTGC CGTTTCAGGATGACAATTTGCTCTCATCCTGGTTCAAGAAGCCAGTTCCCAAGAGCGTGCAAGCGAGGAAGGAGGAAGAA CGGGAAGAGGGGTGGGAGTGTGAGAAGAAGATGAAGGAACCAGCGACGATGAACGCGTTTCATATAATTTCTCTGTCGGA GGGGTTTGATTTGTCGCCGCTGTTTGAGGAGAAGAAGAGGGAGGAGAGGGAGGAGATGAGGTTCGCGACGGCGGGGACGC CGAGCAGGGTGATTTCGAGGCTGGAGGAGGTGGCGAAGGCGGTGAACTTTGATGTTAAAAGTAGTGAAAGCCAAGTGAGG CTTCAGGGGCAGGAGCGTGGGAGGAAGGGGAAGCTGGCGATTGCGGCGGATATTTACGCCGTGACGCCGTCGTTTCTGGT GGTTGAAGTGAAGAAGGATAATGGTGACACCTTGGAGTATAACCAGTTCTGTAGTAAACAGCTTCGGCCTGCGCTCAAAG ACATCTTCTGGACTACCCCTGAGAATTCAACACCTGCTTAG
Protein sequence (LotjaGi4g1v0287000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADKCCSNEAHSAVLQGKYELGRVLGHGTFAKVYNARNLKTGKNVAMKVIGKEKVIKVGMMEQIKREISVMKMVKHPNIV DLHEVMASKSRIYIAMELVRGGELFNKVAKGRLKEDLARVYFQQLISAVDFCHSRGVYHRDLKPENLLLDEDGNLKVSDF GLCTFSDFGLLHTTCGTPAYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLLSSWFKKPVPKSVQARKEEE REEGWECEKKMKEPATMNAFHIISLSEGFDLSPLFEEKKREEREEMRFATAGTPSRVISRLEEVAKAVNFDVKSSESQVR LQGQERGRKGKLAIAADIYAVTPSFLVVEVKKDNGDTLEYNQFCSKQLRPALKDIFWTTPENSTPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 221 | 214 | 4.9E-191 | – | |
| PANTHER | 8 | 221 | 214 | 4.9E-191 | – | |
| Gene3D | 16 | 100 | 85 | 3.2E-28 | – | |
| SUPERFAMILY | 16 | 225 | 210 | 3.1E-79 | ||
| SMART | 19 | 275 | 257 | 3.9E-83 | ||
| Pfam | 19 | 227 | 209 | 1.3E-65 | ||
| ProSiteProfiles | 19 | 386 | 368 | 45.276 | ||
| ProSitePatterns | 25 | 52 | 28 | - | ||
| Gene3D | 101 | 255 | 155 | 2.9E-48 | – | |
| ProSitePatterns | 137 | 149 | 13 | - | ||
| PANTHER | 222 | 381 | 160 | 4.9E-191 | – | |
| PANTHER | 222 | 381 | 160 | 4.9E-191 | – | |
| ProSiteProfiles | 252 | 276 | 25 | 13.336 | ||
| Pfam | 254 | 313 | 60 | 2.4E-22 | ||
| Gene3D | 256 | 378 | 123 | 8.6E-49 | – | |
| CDD | 258 | 373 | 116 | 1.99824E-44 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi4g1v0287000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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