Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0287400 |
| Transcript ID | LotjaGi4g1v0287400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein; TAIR: AT2G24240.1 BTB/POZ domain with WD40/YVTN repeat-like protein; Swiss-Prot: sp|Q9ZUH1|Y2424_ARATH BTB/POZ domain-containing protein At2g24240; TrEMBL-Plants: tr|G7JGR0|G7JGR0_MEDTR Potassium channel tetramerization domain protein; Found in the gene: LotjaGi4g1v0287400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65972871..65974199) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGGTTCAAAACGACAGGGTGAAATTCAACGTGGGAGGCAGAGTTTTGGAAACAACAGCAACAACGCTCGCCAATGC AGGGCGCAATTCCATGTTGGGCGCAATGTTGGACGAGAATTGGGATCTCTTGCCGGATAACGGGAGCGTGAAATTCATCG ATCGCAACCCGGATTGCTTCGCTGTTCTCCTGGATCTGCTCCGAACCGGCGAGCTTTACATCCCGCCGAACCTCCCGGAG AAGCTTCTCTACAGGGAGGCCTTGTACTACGGCGTTCTCGACCACGTTCGTACTGCGAAGTGGGGCCAATTCGACGGCAA CAGGTTGAGGTTGTCTCGGTCAGTGCAGGGACAAGCACCTGGCGATGGAACCGCCATTCGAGCTGGGCCTGATGGTGGTT GTTGTGTAGCACATGGTTCCATGGTTCATGTTTATAATTGGATGTTAGATGAACACCCTCCTCTTAATCTTGATTACCAG AGAGTTAATGATGTTGGTTGGGTTGACCCGGATAATATAGTCATCGGAGTCAGCGAAAGGCTTGGTCGTGGTGATGGTGG GATGGGTCTGTTTACCTCACATACAGGGGAGCTAAGGTACAAGTTTCAGGTTAGTCATGAGAATCAGGTGAAGAGTTACA CTGCTGGTGCTTTGAGTTTCAGTTCTGATTACAAGATATTTTCTAGCTGTAAAGGGAGGAGCAATGAATATGGAGTTGGT GTTTGGGACCAGGTTACAGGGAAGCAAATTGATTTTTTCTATGAGCCTGTAGGTTGGTCTCTTGGTGATGCTGATAGGCT TCAATGGATGGAAGGTAGCAACTGTTTGTTAGTTGCTACAATGTTTCCTAGGAAGGACAACTGTTACATTAGTCTTTTGG ATTTCAGACAGAAGAGGATGGTGTGGTGTTGGTCCGACGTGGGAGCTCCGTTGGCCGTGGATGAGAAGCGGGTGAGGGAC GCCATCGCGATGGAGGACAATAACTCCATTTGTGTGGTGAATGAGTTTGAGGACTTGGGGTTCATGGATTTGAGAAGCTC GGCCGCCGCGAGCGTTAGGTGGAGCTCCAGGAGTAGGTTGATGAAGGGGAAGATGCCTGAGGAACCATGTTACCCTAAAT TGGCTTTGCATGGAGGACAACTTTTCTCCTCCATGAATGATTGCATTTCTGTGTTCTGTGGCCCTGAGTGGGTTTTGACG TCCAGGCTCCGGCGGAGCTATGGTGGTTCGATATGTGACTTTTCCATTGGAGGGGATAGGCTTTTCGCGCTTCATAGTGA GGAGAATGTGTTTGATATATGGGAGACTCCAACACCTCCAATCATATGA
CDS sequence (LotjaGi4g1v0287400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGTTCAAAACGACAGGGTGAAATTCAACGTGGGAGGCAGAGTTTTGGAAACAACAGCAACAACGCTCGCCAATGC AGGGCGCAATTCCATGTTGGGCGCAATGTTGGACGAGAATTGGGATCTCTTGCCGGATAACGGGAGCGTGAAATTCATCG ATCGCAACCCGGATTGCTTCGCTGTTCTCCTGGATCTGCTCCGAACCGGCGAGCTTTACATCCCGCCGAACCTCCCGGAG AAGCTTCTCTACAGGGAGGCCTTGTACTACGGCGTTCTCGACCACGTTCGTACTGCGAAGTGGGGCCAATTCGACGGCAA CAGGTTGAGGTTGTCTCGGTCAGTGCAGGGACAAGCACCTGGCGATGGAACCGCCATTCGAGCTGGGCCTGATGGTGGTT GTTGTGTAGCACATGGTTCCATGGTTCATGTTTATAATTGGATGTTAGATGAACACCCTCCTCTTAATCTTGATTACCAG AGAGTTAATGATGTTGGTTGGGTTGACCCGGATAATATAGTCATCGGAGTCAGCGAAAGGCTTGGTCGTGGTGATGGTGG GATGGGTCTGTTTACCTCACATACAGGGGAGCTAAGGTACAAGTTTCAGGTTAGTCATGAGAATCAGGTGAAGAGTTACA CTGCTGGTGCTTTGAGTTTCAGTTCTGATTACAAGATATTTTCTAGCTGTAAAGGGAGGAGCAATGAATATGGAGTTGGT GTTTGGGACCAGGTTACAGGGAAGCAAATTGATTTTTTCTATGAGCCTGTAGGTTGGTCTCTTGGTGATGCTGATAGGCT TCAATGGATGGAAGGTAGCAACTGTTTGTTAGTTGCTACAATGTTTCCTAGGAAGGACAACTGTTACATTAGTCTTTTGG ATTTCAGACAGAAGAGGATGGTGTGGTGTTGGTCCGACGTGGGAGCTCCGTTGGCCGTGGATGAGAAGCGGGTGAGGGAC GCCATCGCGATGGAGGACAATAACTCCATTTGTGTGGTGAATGAGTTTGAGGACTTGGGGTTCATGGATTTGAGAAGCTC GGCCGCCGCGAGCGTTAGGTGGAGCTCCAGGAGTAGGTTGATGAAGGGGAAGATGCCTGAGGAACCATGTTACCCTAAAT TGGCTTTGCATGGAGGACAACTTTTCTCCTCCATGAATGATTGCATTTCTGTGTTCTGTGGCCCTGAGTGGGTTTTGACG TCCAGGCTCCGGCGGAGCTATGGTGGTTCGATATGTGACTTTTCCATTGGAGGGGATAGGCTTTTCGCGCTTCATAGTGA GGAGAATGTGTTTGATATATGGGAGACTCCAACACCTCCAATCATATGA
Protein sequence (LotjaGi4g1v0287400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVQNDRVKFNVGGRVLETTATTLANAGRNSMLGAMLDENWDLLPDNGSVKFIDRNPDCFAVLLDLLRTGELYIPPNLPE KLLYREALYYGVLDHVRTAKWGQFDGNRLRLSRSVQGQAPGDGTAIRAGPDGGCCVAHGSMVHVYNWMLDEHPPLNLDYQ RVNDVGWVDPDNIVIGVSERLGRGDGGMGLFTSHTGELRYKFQVSHENQVKSYTAGALSFSSDYKIFSSCKGRSNEYGVG VWDQVTGKQIDFFYEPVGWSLGDADRLQWMEGSNCLLVATMFPRKDNCYISLLDFRQKRMVWCWSDVGAPLAVDEKRVRD AIAMEDNNSICVVNEFEDLGFMDLRSSAAASVRWSSRSRLMKGKMPEEPCYPKLALHGGQLFSSMNDCISVFCGPEWVLT SRLRRSYGGSICDFSIGGDRLFALHSEENVFDIWETPTPPII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 436 | 435 | 2.3E-231 | – | |
| PANTHER | 2 | 436 | 435 | 2.3E-231 | – | |
| Gene3D | 3 | 101 | 99 | 1.9E-22 | – | |
| SUPERFAMILY | 5 | 99 | 95 | 5.5E-21 | ||
| SMART | 6 | 108 | 103 | 1.4E-9 | ||
| CDD | 8 | 90 | 83 | 5.8297E-24 | – | |
| Pfam | 8 | 94 | 87 | 1.5E-12 | ||
| CDD | 54 | 153 | 100 | 0.0094489 | – | |
| SUPERFAMILY | 105 | 387 | 283 | 7.06E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein homooligomerization | The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer. |
Expression pattern of LotjaGi4g1v0287400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…