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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0287600 |
| Transcript ID | LotjaGi4g1v0287600.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.2 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A1B5Z7B7|A0A1B5Z7B7_TRISU Uncharacterized protein; Found in the gene: LotjaGi4g1v0287600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66002960..66009693) extracted from Lotus japonicus Gifu genome v1.2.
GCAAAGAAAGCAATAATAAAAGGAAAAGCTGAGACAAGATGAGACATAATAATTGCCAAAGGATAGTAGATGAGTGGCCA ATACTCAATAGCACTGAAGTCAAAACTGATCAGACACGCACCACGGAAGGCACACACTTGTTCTTCTTGTTAATTGAAAA ACCAGATTAGTTTGATTCCAATGGCCGGGAGCTCTTCTTCTTCTGCTGCTACTATGGCTCATCCTCCTCCTCCTCCTCCT ACAAAGTATGATGTGTTTTTGAGCTTCCGAGGGGAAGACACGCGCAAGAACTTCATGAGTCATCTTTATGCTGGACTTGA CAGGAAAAAAATCAATGCCTTCATAGATGACAGATCACTAGAGACAGGTGATGAGATCTCACCTGAACTCTGCAAAGCAA TTGAAGCATCAATGATTTACGTCATCATTTTCTCCAAAGACTATGCTTCTTCCAAGTGGTGTTTGGATGAACTTGTGAAG ATTATGGAATGCAAGAAGAAATATGAAAGGGTTGTGATACCTATTTTCTACTACGTGGAACCAGCAACTGTTAGGCATCA GAAAGAGACTTATGCAGATGCGGTTGTGAAGCATCAAAACCGGCTAGTACCAAAGGAAGTAATACAGAGATGGAAGGAAG CTCTAACCGAAGCTGCTGGAATCTCTGGCTGGGATTCAAACGCCGCCAGGTGACTACTTTTTTAGTTAATTCCACCGTTA GTCTGCATGTGTTTTTCTTAATCATCTGATCTAATCAATTTATAAATGTTTCGTTTTTAAAAATGTTGTGGTCTTTATTT TACAAATCAAAAGCAACAAATATGACACTACTATGTTTCCCTACTGTTGCTACGTAATGACCCCAAATTAATGTTGTTCC TTTCATATGTTCCAGAACAGAATTCGACTTTGTTGATGATATTGTAGAAGATATTTTAAAAAAATTGGATCGTTTTATCT CAAGTTATAGTGATAATAAAGGAATGGTTGGAATTGATGAGCATATTTCACAAATCCAGTCCTTCTCACAACTTGAGCCA GAAGCTGTTCGGATCATAGGAATTTGGGGCATGGGAGGAATAGGTAAAACTACACTGGCCCGGGCACTCACTACAAAAAA CTTGTCATATAGTGACTGCAGAAAGCCGTAGGTAAAGGGTAAAAAACCGTCGCTATTGTTCGAAAAACTTTTACCGACGG AAAAAATTTTCGTGGTTTTTATTTCGTTGTACCCACGGTTTTGGTTCCGTCGGTATAGCTTATAGTGACGGTAATCCTGC CTTAAGTTTAGCTCAACATGATATACCTACGGTTTTGTTTCCATCGGTATAGGTATTCATGACAATTTACGGTTGCACTA TACCCACGGAAATATTGCCGACGCTGTAACATTTTTGTGACGGAGAGTCGTCGTTGGTAGTACTTTAACTTATACCAACG ACAATATTTCTGTCAGTATAGGTTTTAATTGTTTTTTTTTAATAGCTACGAATTTAATATCATTGCTATTGGATTTAATG ACAGTAGTAAATACTAACAAATGAAGATTTTAATTACACATTATAAATTACAATTGTCAACATTACTCGATTATTATGGG TTCTAAGAACTTTTTTACTAATATAAGTTAAATATCCCTTAATTGTTTTAAAGGATAAAAGCACCTATACACATTCAGCT CACATAAAAAAGTGATTTTGCAAAACAAGGGTCGTTTGCGTTTTCAGAAGAAGAAGGCTTTTGTGTTCTCAATGTCCTTT TGCGTTTCAGAGAGAGTAAAGGCTTTTTTTCTCCTATAATTTTAGTCTTTTATGATTATTTTATGATAAAAATAACCTTT GCAAAAAAATAAGCCCTTAATTGTGAAATTTTTGGCGGGCAAATTTTAGCTACGGCATACAAAAGCGTTGGTTTATAATA CTTATAGCCACGGTAAGTCAAATTCCGTTGGTATACGATATCTATTCTCACCCTATTTATATCTATCACTATATCCTATA GCGACGAAATTATATCTGTAGATATATGTAATCTATACCCACAGATTTTATACTCGTCCCTAAAACATATAGTAACAAAA TAAAATATTGGTTGGTATATGATGCTTTTACCCATGGTTGAAGTTTTGTCACTAAATGAATTAGTTACAGTAATAATCAT CCGTAGGTATATCCTACCTATAGCCACGGTTAATAAGGAGTCTGTTGGTAAATAACACTTATACATACGCTTTTTAATGC TGTCACTAAAGCTGTCCGTTGGTATATGGCAATTTTTTTGTAGTGACTGTATGACAAACATGGGAACCAATTCAGTTCCA CGTTGGTTGAAAATGCTCAACAAGAAATAGACACAAATGGAACATACAGTCTACGTCAAAAGTACTTATCAAAGCTTGGT TTTTCAGATGAAAGGGTCAAACGGGCAAAGGTTCTTCTTATTCTTGATGACGTGAAAACTTCAAGTCAAATTCAAGAATT GATTGGAGGGCATGGAAACTTTGGCCAGGGAAGTAGAATCATTGTGACTAGTAGAGACCTGCAGGTGCTTAAGAATGTTG AAGCGGATGAAATATATCAAGTCAACGAGATGAGTTACCAAGACTCTCTACGACTCTTCACATTGAGGGCCTTTAAACCA AACACTCCCGTGGAAGGTTATGCAGACTTGGTAGAAGAGGTATTAAAATATGCTAAAGGGGTTCCATTAGCTCTCCAAGT CTTAGGCTCGCTGCTTTATGATAAAAAAAGGGAAGTATGGGAAAGTCTACTACAAAAGCTGCGAAAACTTCCCAATCGTC AAATTATCGATGTGTTGAAATTAAGTTATGATGGGCTGGATGATGAAGAGAAGGACATATTTCTTGACATTGCTTGCTTC TATGTAGGCCGGGTTGAGGATGCAGTAGTGGATTTCATAGATGCTTGTGGTTTCTCTGCTAAAGTTGGAATGGATGTTCT CAAAGATAGGTGCCTTATATCTATTTGGGATTATCGAGTCGTGGTGCATGATCTAATACAGGAAATGGGAAAAGATATTG TTCATCAACAATGTGCCAATGATCCTGGAAAACGTAGTCGTTTATGGGACTATGAAGATATTTACAATGTTTTAAAAAAT AACAAGGTATATTCTCACGCATCTCAACAACTCACATAGTCTCATGGATTTACTTCTCACACACTACAAAGTACTTAGCG GTTATTAAATTTCTTGCAACTAACTGCACATTCTTTCATGTTTATTTATCTATAATTCCTTGCTTTTACTTTTAGGGCAC GGATGCAATCCAATGTATATTCCTCGACATGAGCACGAAAACTGTTGTTCAACTACATCCTGAGACTTTTAAAAGCATGC CTAATCTGAGAATGTTTTGTTTGGATAGTCGTGATATTCAACCAAAAGTGACCCTTTCTGCATTTCTTGAAAGTCTTCCA GATGGTTTAAAATTGCTTCATTGGGTTGGGTTTCCTCAAAGATCCTTGCCGCTTTGTCCTGAAAATCTTGTTGAACTTAA AATGCGTCATAGCAAGCTTGAACAACTTTGGGAGGATGATCAGGTAGTTCAAATTTTATGTTGTGTTCCTTTATATTTTA GGTATGAATTGCAGTATAAATTGAGGAACTAACAACATACTAAGAAAACACAAACTTGTCTGAGACATGTGAAATCACAC CGTCTTAAGAATGATTTATTTACTTAGAGAAAAATCCCCTTAGAACAAGACGAGAATTCCCTTTATAAACCAGTAAAGCC ATCAAATATGAAGGGAAAAATGAAAAATAAGTGATATGCTAAGTGATGTGATAGAAAATGCAGATAGATGAAAAGAAAAA TGAGTAAAATGAGATTGAGAAGAAAATGAGTGTGTATATATTAAAACTACTTACAAATATCATAAGCCATACATAGCTTA GCCTTTACGAGCAAAATTACCTAGATAGCAAAGCTTCTAGATAATAAATAATTTTTTTTCATATATATACAAATAATTTA TTTTCGATTGAATATATATAATAGATAAAATGACATGAAATAAAATAAAGAGAGAAAATAGAGGGAGTAATTACCAAGGA TAGTTTAGGAATTAAACATGAGTAATTTACAAAGTCAGTTAAAAGTCAATAAAAGTATTATTGAGAATTTAATTTTGCAC ACTTTATAAAGCTTAAGGAGTTAAATACACATTTTTAAAACTTCAGGGACTATTTTGCTTTTTTAACTAGCTTATAACAT GAATATAGGGTTAAGTTTACCTGCTTTTTTTTTTTCTCCTAATCATTTACTACTTTTTACATCAGGAATTACCGAATTTG AAAAGGCTTGATCTTGGGGGTTCTAAGCAGTTGGTTCGAATACCAGACCTTTCAAAGTTCCCAAATATTGAAGATATAGT TCTTAGTGGTTGTGCAAGCTTAATTGAAGTTTACTCATCAAGTTTCCTCAGCAAACTCAAATGTTTAAAGTTAAGGAGGT GTGTTGAGCTTACAAGTTTAAATGTTCCTAGCAATATTCTATCGAGATCTTCTGGACTAGTGGAGCTCTCTAACTGTCGC AAGCTAAAAACGTTGTCAATCAACAGAACCAAGGTGGTTGAATCGCATTTTGATGGATCTTCCTATGAGTCTTGTTGTTT GATGCTCCATAATTGTGAATCGCTTACAAGCCTTCGAATCGACCTTTGTCGGTCAAAATTGCTGCAAAAACTTTGTCTGA GTGGTTGCTCAAATTTACAAACTTTTCCTGAAATTGAGGACACAGTTGAAAACTTAGTCGTGCTTCTCTTAGACGAAATA GCTATACAAGAACTACCTTCATCCTTGCATCGCTTTGTGGGGCTTCAAGAATTGAGCTTGCGTAATTGCTCAAGGCTTGA GATTATTCCTTGTTCCATTGGAAGACTCACCAAACTCCGCAGCTTAGACCTTACCGGTTGTGAATCACTTGAAACATTTC CAAGTAGCATTTTCAAATTAAAGTTGACAGAACTCGATTTGGATGGTTGCTCAAAGCTAAAGACATTCCCAAAAATCTTG GAGCCTGCAGAAAGTTTTGCTGACATTAACTTACCATATACAGCAATTAAAGAACTGCCTTCATCTTTGGACTTCTTGGT GGGTCTTCAAACCTTGTGTCTGTATGGGTGTCGTAATCTGGAGTCACTTCCAAACAGCATTTGCAATCTAAAGCTTCTAT CTAAGCTTGACTGTTCAGGTTGTCGCAACTTAACAGAAATCCCAAATGACATTGGCCGCTTGTCATCATTAAGGAACTTG CAACTGCATCGTACCAAAATTGTGAACTTCCCAGAGAGCATTGGTCATCTTTCAAGCTTGGAATCACTTAATGCAAGTTA TACCGGAATTGTGAACCTTCCAGAGAGTATTGCTCATCTTTCAAGCTTGAACTCACTTAATGTAAGTTATTCCGAAATTG TGAACCTTCCAGAGAGCATGGGTCATCTTTCAAGCTTGAAATCACTTAATGTAAGTTATACTGGAGTTGTGAACCTTCCA GAGAGTATTGCTCATCTTTCAACCTTGAAATCACTTAATGTCAGTGGTTGCAGAAAGCTTGAATGTATCCCAAAACTTCC ACCATTTCTGAAATGGTTATTGGCATTTGATTGCCCATCCATTACAAGAGTGATTTCAAATTCAACGTTCAAACACCCTT CAGATTCCAAAGAAGGTACCTTCCAATTTCATTTCACCAGTAATGAAGATCAGGATCCAAGTGCTTGTAGTGATGTTGTG GCCGATGCAAGGCTTAAGGTCATAGAGGATGCATATAGATTTGTGTACTATTGCTTTCCAGGGAGTGCAGTTCCATATTG GTTCCCTTATCGATGCGAGGGAGATTCAGTAACTGTGGATAAAGATTCTCTAAATTGGTGCAATGATAACAGGCTCATCG GTTTTGCTATGTGTTTCGTTTTGCAACATAAAAATACAGGATCTGGTTCTTTAAAATGCAGCATAATAGTTAAATCTGAT GGGTGCACATTCACCCTTCCCCAAGAAGATCAGCTAAGAGACTCTTTCTCTTGCAGTGCTGCACAAGTGGGACAGAGAGA TCACACATTCCTATGGAAATATTACTTAACGGACTCTGTCGACGAAGGGATCTTTCACGCCTCCAGCTTCACTTTTAAGA TCCCTATTCCGAGCTATCATGAACCAAGTTATGAGGTGAAAGAGTGTGGAATATGCCCCCTTTATACCTCCATCATATCA GAGAAGCGAAAACCCCCCGAAAACCCGTTAAGAAGAAGAAGAAGGTCGTCTCCCTTCGTCGTTGTTCAGATCTGAAGCCA AACTTCGCATTCCTCCTTCGCTGTTCACATCTGAAGTCAATACTATAAAACCTTGGCTGATCAAAGAAAAAGAAATAATA ATAATTACTATAAAACGGCTAAGGTGCTTCTATCTTCGGTTACAGAGAATACACAATACTAGGCCTCTGTATAAGATGAA ACAATAATGGAACCCCTGGTTGAGGGAAAATTTGGACTGCTATGCTATTCTAATACTAGTACTACACAAGTATTTACAAA CTATGTCTATCTCCCGTCAAAAGAAGCACACTAAGAGCAGCTGGAATATGTCTCTGACTTGATTACCCGAGTATTGTAAG AGCCACATAGTCCACACTTGTGATACAAACTGACTTGATAGACAAGAAATTTACAACAACAAAAAAAAATTTAGCTGGCC AGCTAAAATGCCAG
CDS sequence (LotjaGi4g1v0287600.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGGGAGCTCTTCTTCTTCTGCTGCTACTATGGCTCATCCTCCTCCTCCTCCTCCTACAAAGTATGATGTGTTTTT GAGCTTCCGAGGGGAAGACACGCGCAAGAACTTCATGAGTCATCTTTATGCTGGACTTGACAGGAAAAAAATCAATGCCT TCATAGATGACAGATCACTAGAGACAGGTGATGAGATCTCACCTGAACTCTGCAAAGCAATTGAAGCATCAATGATTTAC GTCATCATTTTCTCCAAAGACTATGCTTCTTCCAAGTGGTGTTTGGATGAACTTGTGAAGATTATGGAATGCAAGAAGAA ATATGAAAGGGTTGTGATACCTATTTTCTACTACGTGGAACCAGCAACTGTTAGGCATCAGAAAGAGACTTATGCAGATG CGGTTGTGAAGCATCAAAACCGGCTAGTACCAAAGGAAGTAATACAGAGATGGAAGGAAGCTCTAACCGAAGCTGCTGGA ATCTCTGGCTGGGATTCAAACGCCGCCAGAACAGAATTCGACTTTGTTGATGATATTGTAGAAGATATTTTAAAAAAATT GGATCGTTTTATCTCAAGTTATAGTGATAATAAAGGAATGGTTGGAATTGATGAGCATATTTCACAAATCCAGTCCTTCT CACAACTTGAGCCAGAAGCTGTTCGGATCATAGGAATTTGGGGCATGGGAGGAATAGGTAAAACTACACTGGCCCGGGCA CTCACTACAAAAAACTTGTCATATAGTGACTGCAGAAAGCCGTAG
Protein sequence (LotjaGi4g1v0287600.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGSSSSSAATMAHPPPPPPTKYDVFLSFRGEDTRKNFMSHLYAGLDRKKINAFIDDRSLETGDEISPELCKAIEASMIY VIIFSKDYASSKWCLDELVKIMECKKKYERVVIPIFYYVEPATVRHQKETYADAVVKHQNRLVPKEVIQRWKEALTEAAG ISGWDSNAARTEFDFVDDIVEDILKKLDRFISSYSDNKGMVGIDEHISQIQSFSQLEPEAVRIIGIWGMGGIGKTTLARA LTTKNLSYSDCRKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 13 | 248 | 236 | 2.8E-95 | – | |
| PANTHER | 13 | 248 | 236 | 2.8E-95 | – | |
| SUPERFAMILY | 15 | 164 | 150 | 1.06E-42 | ||
| Gene3D | 19 | 191 | 173 | 4.4E-71 | ||
| ProSiteProfiles | 21 | 161 | 141 | 28.831 | ||
| SMART | 22 | 161 | 140 | 1.4E-47 | ||
| Pfam | 22 | 203 | 182 | 1.3E-49 | ||
| SUPERFAMILY | 185 | 244 | 60 | 9.42E-11 | ||
| Gene3D | 192 | 252 | 61 | 6.4E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi4g1v0287600.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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