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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0288300 |
| Transcript ID | LotjaGi4g1v0288300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Early nodulin-like protein; TAIR: AT2G25060.1 early nodulin-like protein 14; Swiss-Prot: sp|P93328|NO16_MEDTR Early nodulin-16; TrEMBL-Plants: tr|I3S314|I3S314_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0288300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66059579..66062771) extracted from Lotus japonicus Gifu genome v1.2.
ATTATGTAAAAAATTTAAATTACATAATCCTTAAAGATAACGAAAAGGTGAATTTTGGTGTTGGCCAGAACATTGCCAAG TGGCTTTAATACATATACATATACATACATATTGTTACTGAAATTCTATATATTCAGCTAAGTGTTGTGTTGTGTTCAGA CAACCATTGCTTTGATTGCTTCTTCTTCTTCTTCTCTAAGACACTCATTGCTATTGAAACAAACAAAACAAGCATATCTC AATGGGTTCTTTAACTAGAGGCTTTTCAATGTTCATGATCATGTTCTCAATGTGGCTGCTGCTACTTTCCTTCTCCCAAG CTCTAGAGTTTGTGGTTGGAGGCAATGACAACTCATGGAAGGTTCCGGTTCGTTCACAAGATTCACTCAGCCAGTGGGCT CAGAGTAACCGATTCAGCATCGGTGATTCACTCAGTAATGATTTCCCACATCATTCTTCATTTTTCTAATTTTCTTTACT CTGTTTTCTTATGTGAAAATATCTTATTTGCTTTTATTTTATCTCATTCTTATGTTATTCTGTTCTTCACATACAAAATA TAGCAGAGTTTTTTTTTGGTACATAAAAAAAACACATTCTTTCAACATATTATTTTTAGTGGAATTTAATTTATATGTGC TCATTGTGTAATTACATAGTCATTCAATTATATCTCTGGCATGTATTCTAATTTGAGTAATTGTTGTTTACTAGTGAACA CTTAAATTCTTCTCTGAAAGATATAACATATAGACAGGTTAATTAATTTGTCAAAATACCTTTAAAAATTCTTGAATGTG AGAATTGTCAACTATATTAGTCTTCCTTTTGGTCAACTAATGTTCAATGATTTTTGAAGTAATGAAGTACCAACTTTATG ATTCTTCACGATTGATATATTCAAAGACTTTTGAAGGTATTTACTTTTTTAGAGATAAAGGTGTCTGACATTGTATCTTT CGATAACGAATATGAGGATTCACTATTTTTTCTACAGATATTATTATTGTCCATTTCTTTAGTTGAAATTCATTTCCATT TCACTAAAATGTTAGTAATATACATTAAATTAAAACTGAGACCCACATAATGTAAACAACTCTACTTGAATATCAACCTA AATAAATTAGAGTTTATAGGAAGTGATTATGTTAGATTGCTATCATTAATTTCTCTTAGAAACATTAAAAAAAAACTCAT GTTCTAACTTATAGTCTTGTACCACCTTGGATTAAGTTCTTAATGAAACTCCTTTTCTAATTTCTACTACTATTTGTACT CCGTTCAAATATGAATTGGTTAATGATTGCTTGTGTTTTGCAGTTTTTACATACGACAACGAAACAGAATCGGTGCACGT AGTGAATGAGGAGGACTATTTAAAGTGCAAGGTAGAGGGGGAAGACCATGAGGTATACTTGGAAGGGTATAACAAGGTGG TGTTTAACAGATCAGGATCACATCTCTTTATCAGTGGAAAAGATGATCACTGCAAGATGGGGTTGAAGCTTGCAGTGGTT GTCATGTCTCACAGACACCACACAGAAATATTGTCTAGTAACTCGGATCCGTCATCACTTTCACCATCACCTTCGCCGGC TCCTTCATCTTCATCTTCACCTACACCTTCACCTTCACCTGCAAGTAATGGTGTTGCTAGCATTTCAGGCAGTGGATTCA TCATGTGGATGGGAGTTGCATTGGTGATGTTGTTCTTCTTATAGATACATGTTTTCTTCATAATCAATTCTGGCACCATG AGCTACTTACTCCCCAAAAGTTGGTTTTCATTTGAGTCTTTGTTACTATATGCTGTATTTGTGTGGTTACCAGGGAAAGT GCTTTTGTTTTTATTTCGCTTCATTTATGTCTTCTTTTGATGGGAAAGGGGTCTTGATTTTGCCCTTGAACTTGAAATCA TATTTGGATTTGGGTGTATTATTTCGCATTAATTAAGTACCTATATCTATATGCATATTTTGTTCTGCACATGCAGACAG ATGGATCTAATCCAGACTTTTTTGTAGTCTTCTTTGATTAAGATATATTAATTTTTTCAAGTTCAGCTATATAGAAGGAG GACTTACATGGGAAAAAGTCACGGAAGTTAGTTGGATTGTAGATATACCAAGATCAAATTTAGCTCAGATAGGCAATTTC AGAGAAAACCTAAATCAAGTTCTGATTTCATATAGATAGAAGAATATAGATACATGATTATATACATGGTTGATTCTCTA ATTTCATATGTAGACACCAAATTAGTTAAGGCAATGTTGCCAAAAAGATTAAGAAATTAACAAGGGAACAATTAATGAAC ATGTTCATGTTCACAATTACAGAGAGAACATGAATCATTATCTTCTAAAGCAAACCTTCTTTGCAACAAGTTATATGTTG TGTGCATTCGTCCAACGTAAGCTCTTCATTCTTCAACAAAACACTGAAGCTTAAGGCGATGCCATATTAGATCAAAGAAT CTCTAAAAACGGGCTATATCCACACTTCAAAAGTTATGCTGCAAAGTCACACAAGTTGAATACACTGAAAATCCAACTGA GACATAAGGTTTTCAGCACCATTTTTCATTAACATCTTGTTTGAGCACATTTGGATTCATAACTTGCAGCCAAGAGTCAA GGAGTGGTCTTTCTCATTCAAATAGTTCCCTTATCCATACCAAATACATCTCTCTATTCACCATTTTCTCACTTTCTCAC CTCGCTCACCATATTTTCTTTTTGTTCAGAAATACTAGCAAACTGCCTACGAAATTGTTTACACGACACTTCCTCCAAAC CTACGAGTCCAACCAAAACTGTCTCCTAACTTCACTTTCAATCTATTAGACAAGTTTTATATTAAAATCAATTAACCCCA CTAAAAGCAATTGATGTCCTCCCACTCTCCCAGTATCACTCCACCACAAAGACCCTTTTTTAAAAAACCTCCTTACAATA TAAAACTATATCAGTGTACCTCAAGCCTAAAATCTTTCCCCATAACCTCCATGTGGTTTACCAAGCAAGGCATTAATAAA TTTCTCCAAATATCTAAGGCCTAGCCGTCCCTCTTCTTCTTCCCTACAAACAACATCCCCCAACTAACGCATGTTATCTT CTCATTTTGCTCCTCAACTTCCCCTAGCTCCCCCCTAAAAGTTCTCTTTGAATACAATGCAACTTCAGCTATC
CDS sequence (LotjaGi4g1v0288300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCTTTAACTAGAGGCTTTTCAATGTTCATGATCATGTTCTCAATGTGGCTGCTGCTACTTTCCTTCTCCCAAGC TCTAGAGTTTGTGGTTGGAGGCAATGACAACTCATGGAAGGTTCCGGTTCGTTCACAAGATTCACTCAGCCAGTGGGCTC AGAGTAACCGATTCAGCATCGGTGATTCACTCATTTTTACATACGACAACGAAACAGAATCGGTGCACGTAGTGAATGAG GAGGACTATTTAAAGTGCAAGGTAGAGGGGGAAGACCATGAGGTATACTTGGAAGGGTATAACAAGGTGGTGTTTAACAG ATCAGGATCACATCTCTTTATCAGTGGAAAAGATGATCACTGCAAGATGGGGTTGAAGCTTGCAGTGGTTGTCATGTCTC ACAGACACCACACAGAAATATTGTCTAGTAACTCGGATCCGTCATCACTTTCACCATCACCTTCGCCGGCTCCTTCATCT TCATCTTCACCTACACCTTCACCTTCACCTGCAAGTAATGGTGTTGCTAGCATTTCAGGCAGTGGATTCATCATGTGGAT GGGAGTTGCATTGGTGATGTTGTTCTTCTTATAG
Protein sequence (LotjaGi4g1v0288300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSLTRGFSMFMIMFSMWLLLLSFSQALEFVVGGNDNSWKVPVRSQDSLSQWAQSNRFSIGDSLIFTYDNETESVHVVNE EDYLKCKVEGEDHEVYLEGYNKVVFNRSGSHLFISGKDDHCKMGLKLAVVVMSHRHHTEILSSNSDPSSLSPSPSPAPSS SSSPTPSPSPASNGVASISGSGFIMWMGVALVMLFFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 14 | 14 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| PANTHER | 7 | 182 | 176 | 2.3E-61 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| PANTHER | 7 | 182 | 176 | 2.3E-61 | ||
| Phobius | 15 | 22 | 8 | - | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| SUPERFAMILY | 27 | 133 | 107 | 6.09E-25 | ||
| Gene3D | 28 | 144 | 117 | 2.4E-28 | ||
| ProSiteProfiles | 28 | 133 | 106 | 28.216 | ||
| Phobius | 28 | 173 | 146 | - | – | |
| Pfam | 39 | 124 | 86 | 4.0E-22 | ||
| MobiDBLite | 140 | 173 | 34 | - | – | |
| MobiDBLite | 151 | 165 | 15 | - | – | |
| TMHMM | 174 | 196 | 23 | - | – | |
| Phobius | 174 | 196 | 23 | - | – | |
| Phobius | 197 | 197 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Electron transfer activity | Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. |
Expression pattern of LotjaGi4g1v0288300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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