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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0296700 |
| Transcript ID | LotjaGi4g1v0296700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A151SRI8|A0A151SRI8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0296700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:67065732..67068870) extracted from Lotus japonicus Gifu genome v1.2.
GATTTATCTCTTTTCTTGAATATTTTCTCATTCTAAGTGTATATATACATCACTTAGGTATTCACCAAACATTTTCAATG GCACTAACTTTAGGTGACCAATAAACAGGGCATCACCAAGGAAATGGGAATCAGGGCACATGAATTTGCAGCTCAATTGG ATTCCTACATGAGAGGAATGGTGAGCGGTTCTGGTGCTTGTTTCTTTGAAGAGCTTGGGCTCTTCTACATTGGTCCAGTA GATGGCCATGACATGGAAGACCTTGTGCACATCCTGAAAGATGTCAAGGCTTTGCCAGCACTTGGACCTGTTCTCATTCA TGTCATCTCTGAAAAAGGAAAAGGTTATCGTCCAGCTGAAGTTGCAACAGACAAGATGCACGGTAAGCAGTCAAGTCAAT ATCTTGAGATATGTAAAATTATGTTTGCGTTGACTCTAACTTGAAAACAATCATACACTTACTGAGTTCTATTCTATGTA GGTGTTGTGAAATTTGATCCTAAGTCAGGGAAGCAGTTGAAGCCCAAAACAAGTACCCGGTCTTACACCCAGTACTTTGC GGAGTCTTTGACTGCAGAGGCAGATGCTGATGAGAGAATTGTGGCCATCCACGCTGCAATGGGAGGTGGTACCGGGCTGA ACTTGTTCCAAAAGCACTTCCCAGAAAGATGTTTTGATGTTGGTATAGCAGAGCAACATGCAGTCACCTTTGCTGCTGGC CTAGCTGCTGAAGGCCTTAAACCCTTTTGTGCAATTTACTCTTCCTTTCTACAAAGAGGCTATGATCAGGTCAGAATTCA TGGAAAATTAATCCAACCTAGCCTTTTCCCTCATGCTGAAAATTCTTGTTGGATTTTCTCATGTACTAAGTGCATGTTTG GTTTTCAGTTTTTCAACCTCAGAATCAATTCTTATCAAGTAAAATCACTTTGGGATGACAATATAAATGTTTGGGGTCAT ATTGAAGAATTAATTTTGGTCCCCAAAGCAATTATGCGTAGAAGCTGGAGAAAGTAGTTTTTGTCTGTGTTGAACATAAT CAATTTTGAGATTTGATAACTAGATTTTACTACACTACCCTACAAAAAATCATTTTTCCATAGATGTATCTAAGTATGAT CACTTCAATTTCATAATCACTTTTACCGGAATCAATTTTATCCAAAATCAATTGTGATTTGTGATAATGCTGATCCAAAC ACGCAATAAGTCCATGATTGGAAACTGTTCTACAATTGATTCTGCAGCCAGAATCAGTTCTGGGTAGAAATTTCTGCATT GATTATGATGAATGAGAATTTGATATGAACATGCTATAACTTAGGTTTGTGGTGGTGCAGGTAGCACATGATGTGGATCT TCAAAAGCTTCCAGTAAGATTCGCCATAGACAGAGCTGGCCTAGTTGGAGCTGATGGTCCAACTCACTGTGGAGCCTTTG ACACAACATTCATGGCTTGTTTGCCAAACATGGTGGTTATGGCTCCCTCAGATGAGACTGAACTGATGCACATGGTAGCC ACAGCTGCAGCCATTGATGACAGGCCTAGTTGCTTTAGGTACCCAAGAGGGAATGGCATAGGCTCCATTCTTCCACCTAA CAATAAAGGCACACCACTAGAGGTGCTTATTAATGCACAATTCCAAATCATCCTTCAAAATTTTCAAAAGAATTTCAAAG ATATAACATGTTTTCTAATTGATACTTGAAATATAGGTTGGTAAAGGAAGGGTGTTAAAGGAAGGAAGCAGGGTTGCTCT TGTTGGTTATGGAACAATGGTTCAAAGCTGTATGGAAGCGGCTAAGGTTCTTGATGCTCATGGAATCTCAACAACTGTGG CTGATGCAAGATTTTGTAAGCCTCTAGATGGAAATTTGATGAGGCAGCTTGCTAGAGAGCATGAAATTCTCATCACAGTG GAAGAGGGATCTATTGGAGGGTTTGGTTCTCATGTTTCTCAATTTCTAGGCTTGAATGGACTGCTTGATGGTAATCTTAA GGTGAGACTTTTTTCAGTTTTATATCCTTCTACAATTTTCTTAGGGTCTGTTTGGTATGTTGTATTGTATAAGGTCTGAT AGTAGAAAATTTAATAATATTAGGGCTAATAATATTAGATTTGATAGTATTAAGCATAATAAAAATTTAATATTATACAG CGTTTGGTCATACACCGTAAAAATTTAATATAAACTCATGTTTTATAAAATATTGAATAATAATAGATATTATAATAATG AGGATGATGTTAGTGGTGTTGGCGGTGATGATGATGGTGGTGCCAGTGGTAGTGGTGGGTGTTTGCGGCAGTGGCAGTGG CGATAGCGATGACGGCATCAGAGGTGGTGGTGGAGGGTGGAAGTGGCAGTGGTAGCGGCGATAATGGTTGGTGACGATGG TGACAGTGGTGGAGGATGATGCTGGTGATGGTGGAGGGTGATGGTGGTGGTGGTGATGATGAAGGGTGGTGGTGGCAGCG ATGAATTAAATATTTTTATGTAGATTATACATCATATTCATATCATGTCTTATCCATCATTTTATGTATAATAGGAGATT GATGTATAAGCTTATACAATACAATGTTAACACCAGACAATGGATAAGTCCACAATGTATTGTATAAACTTATACTATCA TGTCTAATACGACGTACCAAACGAACCATTATTGTATGCATAGTGTATTAAATAGACAATTTCTTCTTTTGCTACAGTGG CGAGCCATGACATTACCTGACAAATACATCAACCATGGAACTCAGAGAGATCAAATTGAAGTGGCCGGACTTAGTTCAAA GCATATTGCAGCTACCGCTTTGTCATTAACAAATGTGAAATTAATGGAACAATCTCTACTTCTTAGCCTACAAATGTGAA TCTTAGCCGAAGTTTTAAGCTCTGTTAGTGTGATTTCATTTTAGGTGCCCTTAATACATCCAATTGTATATATTAAGCAT TATATCACCAAAAGTGTAGCAATAATAAATGTGAGAAATTTCACATCCTTTATCACTAAGGAAGGGAAGACCAAAAAGGA ATGGCGAGGGAGGGTTGTATAGTAATTGTAGTTAAACTTAATATATTTTGTACAATTATGGAAAATAAATATGAAACTCT GGAAATTAAGAGTTTGAGA
CDS sequence (LotjaGi4g1v0296700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAATCAGGGCACATGAATTTGCAGCTCAATTGGATTCCTACATGAGAGGAATGGTGAGCGGTTCTGGTGCTTGTTT CTTTGAAGAGCTTGGGCTCTTCTACATTGGTCCAGTAGATGGCCATGACATGGAAGACCTTGTGCACATCCTGAAAGATG TCAAGGCTTTGCCAGCACTTGGACCTGTTCTCATTCATGTCATCTCTGAAAAAGGAAAAGGTTATCGTCCAGCTGAAGTT GCAACAGACAAGATGCACGGTGTTGTGAAATTTGATCCTAAGTCAGGGAAGCAGTTGAAGCCCAAAACAAGTACCCGGTC TTACACCCAGTACTTTGCGGAGTCTTTGACTGCAGAGGCAGATGCTGATGAGAGAATTGTGGCCATCCACGCTGCAATGG GAGGTGGTACCGGGCTGAACTTGTTCCAAAAGCACTTCCCAGAAAGATGTTTTGATGTTGGTATAGCAGAGCAACATGCA GTCACCTTTGCTGCTGGCCTAGCTGCTGAAGGCCTTAAACCCTTTTGTGCAATTTACTCTTCCTTTCTACAAAGAGGCTA TGATCAGGTAGCACATGATGTGGATCTTCAAAAGCTTCCAGTAAGATTCGCCATAGACAGAGCTGGCCTAGTTGGAGCTG ATGGTCCAACTCACTGTGGAGCCTTTGACACAACATTCATGGCTTGTTTGCCAAACATGGTGGTTATGGCTCCCTCAGAT GAGACTGAACTGATGCACATGGTAGCCACAGCTGCAGCCATTGATGACAGGCCTAGTTGCTTTAGGTACCCAAGAGGGAA TGGCATAGGCTCCATTCTTCCACCTAACAATAAAGGCACACCACTAGAGGTTGGTAAAGGAAGGGTGTTAAAGGAAGGAA GCAGGGTTGCTCTTGTTGGTTATGGAACAATGGTTCAAAGCTGTATGGAAGCGGCTAAGGTTCTTGATGCTCATGGAATC TCAACAACTGTGGCTGATGCAAGATTTTGTAAGCCTCTAGATGGAAATTTGATGAGGCAGCTTGCTAGAGAGCATGAAAT TCTCATCACAGTGGAAGAGGGATCTATTGGAGGGTTTGGTTCTCATGTTTCTCAATTTCTAGGCTTGAATGGACTGCTTG ATGGTAATCTTAAGTGGCGAGCCATGACATTACCTGACAAATACATCAACCATGGAACTCAGAGAGATCAAATTGAAGTG GCCGGACTTAGTTCAAAGCATATTGCAGCTACCGCTTTGTCATTAACAAATGTGAAATTAATGGAACAATCTCTACTTCT TAGCCTACAAATGTGA
Protein sequence (LotjaGi4g1v0296700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIRAHEFAAQLDSYMRGMVSGSGACFFEELGLFYIGPVDGHDMEDLVHILKDVKALPALGPVLIHVISEKGKGYRPAEV ATDKMHGVVKFDPKSGKQLKPKTSTRSYTQYFAESLTAEADADERIVAIHAAMGGGTGLNLFQKHFPERCFDVGIAEQHA VTFAAGLAAEGLKPFCAIYSSFLQRGYDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMAPSD ETELMHMVATAAAIDDRPSCFRYPRGNGIGSILPPNNKGTPLEVGKGRVLKEGSRVALVGYGTMVQSCMEAAKVLDAHGI STTVADARFCKPLDGNLMRQLAREHEILITVEEGSIGGFGSHVSQFLGLNGLLDGNLKWRAMTLPDKYINHGTQRDQIEV AGLSSKHIAATALSLTNVKLMEQSLLLSLQM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 418 | 418 | 7.1E-266 | – | |
| PANTHER | 1 | 418 | 418 | 7.1E-266 | ||
| Gene3D | 4 | 78 | 75 | 2.6E-8 | – | |
| Pfam | 5 | 68 | 64 | 1.3E-11 | ||
| TIGRFAM | 8 | 411 | 404 | 9.1E-141 | ||
| SUPERFAMILY | 25 | 94 | 70 | 8.83E-7 | ||
| SUPERFAMILY | 78 | 267 | 190 | 3.93E-61 | ||
| Gene3D | 92 | 270 | 179 | 5.4E-66 | – | |
| SMART | 106 | 271 | 166 | 2.1E-64 | ||
| Pfam | 107 | 267 | 161 | 6.1E-41 | ||
| CDD | 112 | 265 | 154 | 1.10963E-71 | – | |
| ProSitePatterns | 212 | 228 | 17 | - | ||
| SUPERFAMILY | 280 | 415 | 136 | 1.01E-34 | ||
| Gene3D | 285 | 416 | 132 | 7.8E-36 | ||
| Pfam | 285 | 408 | 124 | 1.3E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate synthase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. |
Expression pattern of LotjaGi4g1v0296700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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