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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0297200 |
| Transcript ID | LotjaGi4g1v0297200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor family protein; TAIR: AT2G24765.1 ADP-ribosylation factor 3; Swiss-Prot: sp|Q96361|ARF1_BRARP ADP-ribosylation factor 1; TrEMBL-Plants: tr|I3S8Z9|I3S8Z9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0297200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:67123153..67128155) extracted from Lotus japonicus Gifu genome v1.2.
GTCCAAACGAAACGAAATGGCCCAGCCCAAATTTCACTCTATCTGGCTTAATGCGCGAAATGACAATACAGCAAGCGTGT GAGGATCCCATAACCGAAAGGTGGGGGAGAGCGAGGGAATCGAAATCATCACACTTCATTTCTCAATTCTCATCCCTCTC TTTCCGTTTTCGATTCCATCATCCTCCTCCTCCGATTTCAATTCGCCATCGTCGTCGATTCACAATTTCAGATCAGATTC ACACGCACATGCACTCATCAGATTCACAGTTTCTGCTTTAAGATCTGATCCGAATTTGCAACTGATTCATGCTCTAATCG TACTTGTGGCACTGTGTCCGTATCCCTCTGCCGAATCGGAAGATGGGATTAGTGTTTACCAGATTGTTTTCCTCCGTTTT CGGTAACAAGGAAGCTCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACCATTCTCTGTATGCTTCTTACCT CTCTCACCTTCTTCCTCATCCAATTTTTGCAACTTTTCGTATTAATTTTTTGGATTTCTCTTCAGATCGGCTCCAGATGG GTGAAGTTGTCTCCACCATTCCAAGTTAGTACTCGATCTCGTTTTGCGTTTTCCTTAATTTTCAGTTCGTTTGGCTTTGC ATGTTGCCTGATGATTTGTCTTTGGATTTATTTGATTGTTTGATGCAGCAATTGGGTTTAATGTTGAAACAGTGCAATAT AACAACATTAAATTTCAAGTCTGGGATTTAGGTAATGGCTTCACTCACCTTGATTCATGCAAATCCTGTATATTATAATG TGTGTGATTGATTGTTAAGACATTTGTTTTTCGCCGTTCTTGTTATGCTAGACAAATTCGAAACCAACAATAGGGTCATA GAGATGAACATGTGATCAAAATTTAGTAAATGAGGACTTACACATCATTTTAATGACTTGTGAGCGAAAAACAGTCTAAT GCAATTTTAATTTTGATGGGAGTCTCACTGTCACTAGGGATGAAAGTCGGCCAGCCTAGCTCATGGTCGGCTTGTTAAGA AAGTCTCCCTGTTTTCCTGGCTCAAGCATGTATCACTCTTAGCTCACGAGTTTCTTGGGCTCAAGGAGCCAGGTTCAAAT CCTATACAACAACAGACATTGCTTTTTCCCACCAAAATCCTATACTTTATTATTTTGACTTCAAAAGAGTGGTTAACTAT GTAAAAAGGTAAAATCAAATAAGTGTGTGAGTGTCTCACAAGCTATGAAGCTAATACATGGGCCCATGATTTTTACGAGT TATTATTCGATACTATAAGTGCACCACATCACAATATGAGTTGGTATAACTTTGTCCTTCTTGGCCATAAGTAGTTTTAT CTATTGGTATTTATCCATTTGATGGAGTGCAAGTGAAGATAAAAATATGTTGAAAACCTAGACGACATTATAATTTTTTT TTCTGTTTCAAGCTATTTTCTTTGATACACACATAGGTCATATGTTTTGAAAAAAAATAAACACCTTTAATTTAGACTTT CAAACCATAAATATAGTTTATTGTTTACAATCATGTGAGCTTATGGTTGCTTGAGACTTAAATATTATATGAAATAGGAA GGCTTATTACAATTTGCAATTCTGATATCAAACTTTTGTTTGTACAGGTGGGCAAACAAGTATCAGGTAAGACTTTTGGT TTCATTCATGACTTTTTTTATCCTCCTATTTGACATGAGGATGCACTAAATGGTCTTATGCTAGCATATGAAGGAATTTC GTCTTAAAATTGTGCCTTCTAGATCTGTTTTTGTTGTTGTAGTCCTTTAACTCTCCCAAATTTCTGTGCACAAGTTATTG TGAAAACCCTGATATGTGTTATTCTAGTAAAAAGATAACCATCTGTTAGGCCCGTTTTTTAATTTAGAAAGAAACAATAC GAGACTGAGATGATAGATAATGGGACAGAAGAGGAGTTAGTTAGGGTCCACAGAGACAAGGATGAGCTAAATGACTAGTA TGCTTAGTTAGTATGATTAGTTTGTCCGCAAAGACAGATTTCTCTTTTTTTATTATTGTGTTAAATTCAGTTTCATTCTT GTTGTTTAGCTCAAGAACAATGTACTTCCCCAATATTTGAACTTTTTAACTTCTCCTTTAGGGATGCTTTGCTATGACTT AACCATCCTATACTTATTTTCTCCATTAGAACAAAAAATGTATGCAATACGTATGTGCAGCTTAAAAATACACCATTTCA AGGAGTTTCCTTTGTGCATAAATTACATCTCTCACATAATTTTCCTTAAAAAAAACAGAGCAAGCCACGGTGGCAAATGA AACCATCTTGGCTAAACCACAAGATGGGAAAATAAATTTAATCCTTACTAATATGTAGTCTCCATCAACTTCTCCAATTT TTTTTGGTTTGGTCTTTTTTCCCCTAGGCCATACTGGAGGTGTTACTTTCCAAATACTCAAGCAATAATCTATGTTGTCG ATTCAAGTGACACTGATAGGCTTGTGATAGCTAAGGAGGAGTTCCATGCAATTCTGGAGGTATATGTTGTTCCTGATTTG TTTTTCATACACATATGTAAGTATGTATTTATAGTAGTTTTATTACATTTATGGTATGGGATATTGGCTTTTGTCATCTT ATGAATAATTAGATTGAGAAAAACATGAATGTGAATCTGTCACTGGCAAAAACTTGCACAAAAATATCTAGGTTTGTAAG GAGTGTAAGAATTGCTTACAAGTCATAACATTTATTAATGTACTCAGTTTGGTTACTTCAAATTTTATTGCAGCTGCTAT CATTGGGGATTTGTAGCTCTTGTATCTCTAAAGTATTTGAGTTACATTAAGCTTTAGCAAACACTAATTGGATTAAATAG AGGAATGCTTCTGGTGTTATTTGTGATAAAAAGGTGTCTCTTAAGCTTGGAGGAAAGTTTACATGGTCATAAGACCAACA ATTATTTTTAGTTTTGAATACTGGGCAATAAAGTGCCAAACAAGAGCATATAAGTGTTGCAGGGATGAGAATGCTGCAAT TGATCATGGATTAATAGTCATAAAAGAAAAGACAAGGTCATGAATGAATGTATTGGAGAGAATGTAGGACTAGCGGCTAT TTTGAAAAGATGCCAGAGTTGTGTTTAAGATGGTGTGGATATGTAAGAAGACCAATCGAAGCCTATTTAGAAGGACTATT AGACGGAAGACAACTCCATAATTAGAGGAAAACCAAGAAAAGTTATTAGTGAAATCATTAAAAATTATTTAGATCTAGCC TCTTTCAAAAATTAGCTTTTGAAATTCGATTGTGTATTTTGATTCATGTAGTCAATTATACTTAGTTAGACTCGGCTTTG ATTGTGGTCATTGAAGGTTGAAGGTTTTGGGCCTACTTTGTTTGAGAAAATACTAATTATTTTCTCTGAATCTTTTTGTC AGGAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTTGCAAACAAACAGGTCAGAATTTGATCTATATTTGTTGGATTC TTATATTGTCACATAAGATGGAGTCAGTTAATATTCACCCAAAGAAAAGGAAACAATGAGTATATAAACAAGTTAGGAAG CTAATATCATTGACAGAAGTCTTTGCTAGAGGACATGGTGCAAAAGGATATACTCAGATTATACTTAATTATTGATTAAT CATATGCATAATGATATGGCAAGATGCCAGCTGGATAAGACTGGATTTTTGAAAACTTTATTTATTTTAAATGTTCTCTT TCCACTGTACAGGACCTTCCTGGTGCCCTTGATGATGCTGCAGTGACGGAGGCTCTCGAGTTACACAAGATTAAGAATCG CCAATGGTCAATTTTTAAAACTTCTGCAATAAAAGGCGAAGGGCTTTTTGAGGGCCTGGACTGGTAAGTCAGATAAAACT GAACTCTTTCAGAAGAGTTAAGATTTCAAATATCAATTAATATTAGTTTTGCTACGTTATTATTCTTTTCCTATTTTTTC ATTTCTTTGCTGTATTTTTTAGGGTGTTTTTTTATACTAGTTTCTGTGAAATAGAGAGGTTGTAGGTTTGTTAGTGAACC CTTTCCAACAAGATGTGACTAACTTGGCATGTGCTCGTTTGGAAACCTGAAATGAAATAATATGGCTTGGAACCTTTGCT TTATTACATTTATCTTTAGAGTTACTGAGTTACATGTTTCATAATTAAGAATGTTGGTACTTCTTGTTCTAGAGATGTTT AGAGTCTCACTGCTTCCAGCTGTAATTCTAGCTGATGATATTTAGCTATGGCTTTTTGTTGCTCACCATGGCTACTATCT TGTGCAATGTTAATATGTGAGCTTGTCGTGTAGGTTGAGCAATACACTCAAATCCGGAGGCGGCTAATGGTGTCAGCTTT AACGAATTAGATGCTTAGATTGATTGGTGAATTCAGAAGGAAGGTTGACATGTGTATTTTGGTATCACTTTCACTATGAA TGGTGTTATAATATGATATTATTTTTCATACTCAGGCATTTATTCCGGTTTTTGTGTTTAAAGATTAATGATTTGAATGC TGTTCAATGGTTTTTGTTGTCTTACTCAGAACAATTCAGATCAAATTACGTCCAATCTTATTTCTGCTTATAAGGTGTTT ATATAGTAGTAGACCAACTTTCAGATTCAGTTTAAAAATTAAGATTGTGCCACTTTGGATGAATCAAAACTTGATTGAAC AAACTAGTTTAATTTAAAATAAACCCTTTATTAGTCTTTGAAAGATATATTACAAGATCATTGTCACCGAAGAAGTCATT AAAAGATCACCTTCTTCAGTAGCCCATTGTTGGAGTCTGCAAAACCTTGCTAATGGAGGCTGACATGATTTGGACTTAAA CGCAGACCAGATGGTGATGTGGCTATCTTGCTGCCTCCTACATGGCAAAAACAGTAAATCCAAGTCAAGTAGAAAATCTA CAAATGTTCGTCTTCCACGATTCCAAACTCCAAATTGCAACAT
CDS sequence (LotjaGi4g1v0297200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATTAGTGTTTACCAGATTGTTTTCCTCCGTTTTCGGTAACAAGGAAGCTCGAATCCTCGTTCTCGGCCTCGACAA TGCCGGCAAAACCACCATTCTCTATCGGCTCCAGATGGGTGAAGTTGTCTCCACCATTCCAACAATTGGGTTTAATGTTG AAACAGTGCAATATAACAACATTAAATTTCAAGTCTGGGATTTAGGTGGGCAAACAAGTATCAGGCCATACTGGAGGTGT TACTTTCCAAATACTCAAGCAATAATCTATGTTGTCGATTCAAGTGACACTGATAGGCTTGTGATAGCTAAGGAGGAGTT CCATGCAATTCTGGAGGAGGAAGAACTAAAAGGTGCAGTTGTTCTCATTTTTGCAAACAAACAGGACCTTCCTGGTGCCC TTGATGATGCTGCAGTGACGGAGGCTCTCGAGTTACACAAGATTAAGAATCGCCAATGGTCAATTTTTAAAACTTCTGCA ATAAAAGGCGAAGGGCTTTTTGAGGGCCTGGACTGGTTGAGCAATACACTCAAATCCGGAGGCGGCTAA
Protein sequence (LotjaGi4g1v0297200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLVFTRLFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC YFPNTQAIIYVVDSSDTDRLVIAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKNRQWSIFKTSA IKGEGLFEGLDWLSNTLKSGGG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 177 | 177 | 5.5E-30 | – | |
| PANTHER | 1 | 182 | 182 | 1.5E-120 | – | |
| PANTHER | 1 | 182 | 182 | 1.5E-120 | – | |
| SMART | 1 | 181 | 181 | 5.9E-92 | – | |
| Pfam | 6 | 176 | 171 | 2.8E-77 | ||
| ProSiteProfiles | 11 | 177 | 167 | 22.948 | – | |
| SUPERFAMILY | 14 | 178 | 165 | 3.34E-56 | ||
| TIGRFAM | 16 | 168 | 153 | 1.0E-22 | ||
| SMART | 18 | 180 | 163 | 0.01 | – | |
| Gene3D | 18 | 177 | 160 | 1.7E-67 | – | |
| CDD | 19 | 176 | 158 | 5.95016E-119 | – | |
| PRINTS | 19 | 42 | 24 | 2.8E-21 | ||
| PRINTS | 47 | 71 | 25 | 2.8E-21 | ||
| PRINTS | 74 | 99 | 26 | 2.8E-21 | ||
| PRINTS | 119 | 140 | 22 | 2.8E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0297200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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