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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0298100 |
| Transcript ID | LotjaGi4g1v0298100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT5G57620.1 myb domain protein 36; Swiss-Prot: sp|Q9FKL2|MYB36_ARATH Transcription factor MYB36; TrEMBL-Plants: tr|A0A0L9TF41|A0A0L9TF41_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0298100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:67211036..67213329) extracted from Lotus japonicus Gifu genome v1.2.
GTTTGTCCAGTTGCATGGATAATTAAACGGGAATGAGCAAACTAATCCAAAAAGGAGGACAGAGAAAGAGAAAGAGATAG TTGATATAAACCCTAGAACTTGAATATAGTATATACACATTTAGTGGTATCATCAATTCATTCACACTTCATTTTTTTTT ACGTCACATTTCCATCATATTTTCTTCATATTTCTCTACTGTTCTGATGATTACATCGCCTATCATGTTTTTAATTTTTC TGTTTTCTTTTCCTTATCAGACCGACGGTAAGAGACTGTAAGTGTGTTTCGAGTGTCAACATAACATTATTCCATATCTG CTGAGGGAGTGGAAGAGGTGTAAGACTTTTTGTCCTTTTAACCATCACATCAGCCACTCTTCCGCCCTATAAATCATTCT CTTCCTTCCTCGAGTTTTCCCAATTCTCTCTTCCTTCATATTTCCTCCAACACAAAGAAATTAAGGAGAGAAGAAATTAA ACCTGATTAGAAAGAGAGAGATAATCACAATTCACAACAACAAAACCATGGGTAGAGCTCCATGCTGTGACAAGGCCAAC GTGAAGAAAGGACCTTGGTCTCCTGAAGAAGATGCTGCACTCAAATCCTACATAGAAAAGAATGGAACTGGAAACAATTG GATTGCTCTTCCTCAGAAAATAGGTATGTTACATTTTTTTTCTTCTTTAATTTACATCTTCTTGTAGTATATATATAGAG AGAGTAATTAATCTTATAGTACTTAGTTTGGCTTTGGAAAGATAAACTTAATTTGATTATAATAATCATTGATTAATGGA CAAATGATTCCCAGGGCTCAAGAGATGTGGAAAGAGTTGCAGGCTTAGGTGGTTAAATTACTTGAGGCCAAACATCAAAC ATGGTGGATTTACTGAAGAAGAAGACAACATCATTTGCAGCCTGTACATTAGCATTGGCAGCAGGTCTTTTTCTCTTGAA ATTAACCCCAATCTCCATGTGCTTCAACACAGTTTATTTGTCCTTTTGCTTTGTCACTAGAATCTCCCCATGTTAATTTT TCCTTTAGCTATTCCTAGAAACTTGAGAATCCTTGTAATTAACTTCATATCTCTATGTTTGTTTAGGTGGTCCATTATTG CTGCTCAGCTACCTGGAAGGACTGACAATGACATCAAGAACTACTGGAACACCAGATTGAAGAAGAAATTGCTTGGGAGG AGAAAACAATCTAACCACAGCACAAAAGACACAAATGGATCAATAGAGGAGAATTCTTATTCAAACAATGCACTGAGCAG TTCTGCACTTGAAAGACTCCAACTTCATATGCAACTTCAGAGTTTTCAGAACCCTTTCTCTTTCTACAACAACACCAATA ACCCTACACTCTGGCCCAACAAGTTGCATCCTTTTCAAGAAAAAATGATCCACCAGAGCCTGCAGCAACAGCAGCCCTTG AATAATCATGATGGCTCTAACAGCAACCCTGTGATCATGCAACAAAAAGATGAGTTCTACAAGCCTTCTTTTGGTGATGG TGTTGTGCTTCAACAAGATGGTGCTAAGATCAATATTAACACCACACCACAGGTTGGTGGTGTTTTGGAGAGTCCTTTGA GTAACAGTTCTGTTCCCTTCTCTGCTTCTGGGAGTGTTGCACCAAGAGGAGAAGGTTCTGAGAAGAATTATAATATGGGG TTTCAGTTTCAGTTTCAGCAAGTTGGTGCACTGCAAACTGAACTCGATGACATTCTCAACAACAGAACAGTGGGTAGTTA CATGCCACAGCAGGAGGAAGATCATCATGTGGTGGCTGATCAATTTGATTGTTTCAGAGAGATGAATGGTGGATCAAAGG ACAGTTTGATTTGGTGGTCCAATGATTCTGACACCAAATCAGGATCCTCAAACTCTTGGGACTCTTCAACTAATCAAGTT CTTCTGCCAGAAGGGATGTTCCAAGATTATGAACTTGGTTACAGTCTTTGATTAACTAGTCTCATGAATTTAATTAACTT TCTGGCTATCCTAGATAATTTGTATTGCCTTGGTCCTAAGATGAGGAAAGATAAGAGTGATGAGTAACATGTCTTGTAAA CAATATGGTGAATATGATAATAATGTATATCTTTAATTTGTTTGAGTTATATGTAGAAACTACTTGTTTCTTCTAAACAA TAACCAAAAACCATTAATTTGAAGCAAGTTATTCTAAAGAAAATTATTTCTGGAAAGAAGTTTCTGCAAGTACTTTCTGA TCAAGTGCCAAAGTTGCAGAAAAATAAGTAGATCTATAACATGCTAAAAGCCTC
CDS sequence (LotjaGi4g1v0298100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGAGCTCCATGCTGTGACAAGGCCAACGTGAAGAAAGGACCTTGGTCTCCTGAAGAAGATGCTGCACTCAAATC CTACATAGAAAAGAATGGAACTGGAAACAATTGGATTGCTCTTCCTCAGAAAATAGGGCTCAAGAGATGTGGAAAGAGTT GCAGGCTTAGGTGGTTAAATTACTTGAGGCCAAACATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATTTGC AGCCTGTACATTAGCATTGGCAGCAGGTGGTCCATTATTGCTGCTCAGCTACCTGGAAGGACTGACAATGACATCAAGAA CTACTGGAACACCAGATTGAAGAAGAAATTGCTTGGGAGGAGAAAACAATCTAACCACAGCACAAAAGACACAAATGGAT CAATAGAGGAGAATTCTTATTCAAACAATGCACTGAGCAGTTCTGCACTTGAAAGACTCCAACTTCATATGCAACTTCAG AGTTTTCAGAACCCTTTCTCTTTCTACAACAACACCAATAACCCTACACTCTGGCCCAACAAGTTGCATCCTTTTCAAGA AAAAATGATCCACCAGAGCCTGCAGCAACAGCAGCCCTTGAATAATCATGATGGCTCTAACAGCAACCCTGTGATCATGC AACAAAAAGATGAGTTCTACAAGCCTTCTTTTGGTGATGGTGTTGTGCTTCAACAAGATGGTGCTAAGATCAATATTAAC ACCACACCACAGGTTGGTGGTGTTTTGGAGAGTCCTTTGAGTAACAGTTCTGTTCCCTTCTCTGCTTCTGGGAGTGTTGC ACCAAGAGGAGAAGGTTCTGAGAAGAATTATAATATGGGGTTTCAGTTTCAGTTTCAGCAAGTTGGTGCACTGCAAACTG AACTCGATGACATTCTCAACAACAGAACAGTGGGTAGTTACATGCCACAGCAGGAGGAAGATCATCATGTGGTGGCTGAT CAATTTGATTGTTTCAGAGAGATGAATGGTGGATCAAAGGACAGTTTGATTTGGTGGTCCAATGATTCTGACACCAAATC AGGATCCTCAAACTCTTGGGACTCTTCAACTAATCAAGTTCTTCTGCCAGAAGGGATGTTCCAAGATTATGAACTTGGTT ACAGTCTTTGA
Protein sequence (LotjaGi4g1v0298100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRAPCCDKANVKKGPWSPEEDAALKSYIEKNGTGNNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIIC SLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNHSTKDTNGSIEENSYSNNALSSSALERLQLHMQLQ SFQNPFSFYNNTNNPTLWPNKLHPFQEKMIHQSLQQQQPLNNHDGSNSNPVIMQQKDEFYKPSFGDGVVLQQDGAKININ TTPQVGGVLESPLSNSSVPFSASGSVAPRGEGSEKNYNMGFQFQFQQVGALQTELDDILNNRTVGSYMPQQEEDHHVVAD QFDCFREMNGGSKDSLIWWSNDSDTKSGSSNSWDSSTNQVLLPEGMFQDYELGYSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 357 | 357 | 2.0E-115 | ||
| PANTHER | 1 | 357 | 357 | 2.0E-115 | – | |
| Gene3D | 7 | 68 | 62 | 2.4E-19 | – | |
| ProSiteProfiles | 9 | 62 | 54 | 14.075 | ||
| SUPERFAMILY | 11 | 109 | 99 | 1.27E-26 | ||
| SMART | 13 | 64 | 52 | 5.1E-12 | ||
| Pfam | 14 | 62 | 49 | 3.6E-13 | ||
| CDD | 16 | 62 | 47 | 2.36479E-9 | ||
| ProSiteProfiles | 63 | 117 | 55 | 22.109 | ||
| SMART | 67 | 115 | 49 | 2.3E-11 | ||
| Pfam | 69 | 111 | 43 | 5.7E-10 | ||
| Gene3D | 70 | 142 | 73 | 4.5E-19 | – | |
| CDD | 71 | 113 | 43 | 9.60361E-9 | ||
| MobiDBLite | 119 | 139 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0298100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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