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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0299300 |
Transcript ID | LotjaGi4g1v0299300.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | CASP-like protein; TAIR: AT4G25830.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6SZ04|CSPL3_SOYBN CASP-like protein 2C1; TrEMBL-Plants: tr|V7CBQ1|V7CBQ1_PHAVU CASP-like protein; Found in the gene: LotjaGi4g1v0299300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:67337313..67339703) extracted from Lotus japonicus Gifu genome v1.2.
GTCAACCATTTAGGTAATACCGCACAGTATAACACATGCAGCACCTTACCATTCAATAAATTCCCCCCAATCCCAAACCA AGCTTAAACCAACATCTCTACACAAGATTCACCTCAAGAAAAATGACAATGGAACTTGGAATAGCAAAAGCAGAAGCTTG TCTAAGAGTAACAGCAATACTGTTCCTAGTATTAACAACATGTCTAGTTGCTTTCGATTCTGAGACCAAGGTTGTCATAT TGTCCATTGAGAAGAAGGCCACCTACAAAGACATGAAGGCTCTCAAGTACTAACTAATAATACCTCTGTTTTTTTCTGAT CCCTTTAAATTAGTTAAAGCCTTGAATATAATTTTGTATCTATGTTTTTATAGGATCTCTATGTGGGTTACATCTGCGGC TGCGGGTTATAACATGCTTATGTTATTTAAGAACTCTCTGATCTCAGCTTGTTCTGGAGGGAATTTCAACGGATCATATT TGTGCATGGCTTGGATTTACTTCTTGTTGGATCAGGTAAATTACTATTTTCCATATATGTTTTCGTATTTAAAACTCTTT CATATGTATACTCTGATCAAAGATGCAAGGTGTGTTTGTATTTGTCAGCAGCACACATTCGAAGACAATTTAATGTGTTT TTGGTCGATTTGAACGTAAATACAAAATCATATACCTATAGTCTGCTTGCTACTCGATTTGGGAAAAATTGAAGCAAACT CAGAATCTTCAAATTCTTGATCACTAAAAAGTATTAGTTATTTGTGCTTATTTTTGCTTGAATTTGAGGAACTAGATCAA AAAATTTGCGGTGGTACATATGCCCTATATAAAAATGGCAAGTTCACGAGACTCGGGATAATGATACAGGGTTGTCTCTT TTTACAGCTAGAGTTGGGATGTATGTTTGTTCGAGGAAAAGTATGAGTCTATCAAGCACAATTAAGTGCAAAACCTCTTC ATTTGATTCTGAAGTCAAAATCAATTCTCGAGAAGAGATTCTGTGAATAGCTTATGAGTTTCAGAATTATTATTAGAAAA AAAAAAAGTGACACAAACATGTTGTGAATTGATAACTAGCTAATTGGTACTAAATACATGAAATTGATTTTTGTGGTGGT CATCTCAAGTTCAAGTTCTGGTGATGTCTGTCCAGCTAGCAATATCATGAAAATTAGTCTATCTACAATTTTTTGTTTGA ATCAAATGTTTGACCAATTTTGGTTTTATATCAAAATTTGTAAACAGATTGCTGTGTACTTGACATTTGCTGCAAACACA GCATCATTTGAAGCGGCGCTGCTGGCATTAACTGGGTCAGAAGCGTTACAGTGGATGAAGGTATGCAACAAGTTCACCAG ATTCTGCGTTCAAATGGGAGGGGCTCTGTTATGTGGCTATGTAGCGTCCATCTTGATGGCTCTGATTTCCACTACCTCAG CCTACAGAGTGTTCAGGATGTACTCCCCAAAGTGGTTCCTGCGTTTAAAGAGCAAATGATCATTATCTTTCAGAGCGTGT ATCCTGTGAACTTTGTCAAATGAAGCAAAAAGTTCATGAAAGTTTGTGGTAGATGGACATAAGGTAGCTTGCCTTTGTTT TCAATTACTAAGAGGAGGATTAGTATCTTCTCAAAAGCTGAGGTTTATATCCTCCAATCATATTGAAATTTTTGTGTTTA TTCATATCTTCATGTATATATTAAATATGTGAAGCTATATAAATATTTTCAAAAGGCAGGAAGATCCCAACTTTAACAGA ATAATATGGAAAATACATTCACACAATAGAGAAAGTGAGTGAAAATGACATATATAAGAGAAAGTGAGATTCAATTGAAT CTAAGTTATAATATTATTCATACCCTTAGTAGGTTGATGCATTTATCTTTTGTGGAGCTCTCCAATGTTCTATCTAATTT AAGAGTTACAATGCCCTCTTTTTTGTCGATCATTAAATACCAAATTTCAAAACTTAGTACTATTTGTCATGTCACCACAT TAATGTAGTATACTTTTCTCTCTAAATTTCATTTATAGGAATTAAGCCAAGTATAGCAAATTGTTGCTATATATGTGTAT TGTTGGATAGGTCAGTTAAGGAACGTTTCACCCAGCTAATGTCCGAGTGACCTCCACAAGGCTGAGACATCTGAAGCAAA GCATAACGGCATGAGGTCAATCATGTCCTCGAAAGCTCCTTCTAATGACTTGCCTCACACTAGTATAGACAACTGACATA GACTTCGAGCATATAAATACATGTTCTACCGTTTATTTATGTAACATGCTCACTTCTAATATTTCTAAGAGTTTAACTAA GTTTTTGAGATTATCTCTTAGCTCTTATCTTCTGCAGGTACTTCTTTCCATCACAACAAGGAACCAACAGC
CDS sequence (LotjaGi4g1v0299300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAATGGAACTTGGAATAGCAAAAGCAGAAGCTTGTCTAAGAGTAACAGCAATACTGTTCCTAGTATTAACAACATG TCTAGTTGCTTTCGATTCTGAGACCAAGGTTGTCATATTGTCCATTGAGAAGAAGGCCACCTACAAAGACATGAAGGCTC TCAAGATCTCTATGTGGGTTACATCTGCGGCTGCGGGTTATAACATGCTTATGTTATTTAAGAACTCTCTGATCTCAGCT TGTTCTGGAGGGAATTTCAACGGATCATATTTGTGCATGGCTTGGATTTACTTCTTGTTGGATCAGATTGCTGTGTACTT GACATTTGCTGCAAACACAGCATCATTTGAAGCGGCGCTGCTGGCATTAACTGGGTCAGAAGCGTTACAGTGGATGAAGG TATGCAACAAGTTCACCAGATTCTGCGTTCAAATGGGAGGGGCTCTGTTATGTGGCTATGTAGCGTCCATCTTGATGGCT CTGATTTCCACTACCTCAGCCTACAGAGTGTTCAGGATGTACTCCCCAAAGTGGTTCCTGCGTTTAAAGAGCAAATGA
Protein sequence (LotjaGi4g1v0299300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMELGIAKAEACLRVTAILFLVLTTCLVAFDSETKVVILSIEKKATYKDMKALKISMWVTSAAAGYNMLMLFKNSLISA CSGGNFNGSYLCMAWIYFLLDQIAVYLTFAANTASFEAALLALTGSEALQWMKVCNKFTRFCVQMGGALLCGYVASILMA LISTTSAYRVFRMYSPKWFLRLKSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 11 | 11 | - | – | |
PANTHER | 6 | 180 | 175 | 7.0E-64 | – | |
PANTHER | 6 | 180 | 175 | 7.0E-64 | – | |
Pfam | 7 | 158 | 152 | 6.1E-29 | ||
Phobius | 12 | 31 | 20 | - | – | |
TIGRFAM | 14 | 169 | 156 | 3.8E-25 | ||
Phobius | 32 | 50 | 19 | - | – | |
Phobius | 51 | 70 | 20 | - | – | |
Phobius | 71 | 76 | 6 | - | – | |
Phobius | 77 | 97 | 21 | - | – | |
TMHMM | 77 | 99 | 23 | - | – | |
Phobius | 98 | 102 | 5 | - | – | |
Phobius | 103 | 124 | 22 | - | – | |
TMHMM | 103 | 125 | 23 | - | – | |
Phobius | 125 | 144 | 20 | - | – | |
Phobius | 145 | 171 | 27 | - | – | |
TMHMM | 146 | 168 | 23 | - | – | |
Phobius | 172 | 185 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0299300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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