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LotjaGi4g1v0300700.3

Overview

Field Value
Gene ID LotjaGi4g1v0300700
Transcript ID LotjaGi4g1v0300700.3
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:67479835..67480146) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCAGGAAGAGGAAAGGGAGGCAAGGGTTTGGGAAAGGGAGGAGCGAAGCGTCACCGGAAGGTTCTGAGGGATAACAT CCAGGGAATCACCAAGCCTGCCATTCGCCGTCTCGCAAGGCGTGGTGGTGTGAAGCGTATCAGCGGTCTCATCTATGAAG AAACTCGCGGTGTTCTCAAGATCTTCCTCGAGAACGTTATTCGTGATGCTGTTACCTACACTGAGCACGCTCGCCGCAAG ACTGTGACGGCGATGGACGTTGTTTACGCTCTCAAGAGGCAGGGCAGGACCCTCTATGGTTTTGGAGGATAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0300700.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAGGAAGAGGAAAGGGAGGCAAGGGTTTGGGAAAGGGAGGACCTGCCATTCGCCGTCTCGCAAGGCGTGGTGGTGT GAAGCGTATCAGCGGTCTCATCTATGAAGAAACTCGCGGTGTTCTCAAGATCTTCCTCGAGAACGTTATTCGTGATGCTG TTACCTACACTGAGCACGCTCGCCGCAAGACTGTGACGGCGATGGACGTTGTTTACGCTCTCAAGAGGCAGGGCAGGACC CTCTATGGTTTTGGAGGATAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0300700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSGRGKGGKGLGKGGPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT LYGFGG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PRINTS
PR00623
3 22 20 5.2E-40
IPR001951
SMART
SM00417
12 73 62 9.3E-26
IPR001951
Gene3D
G3DSA:1.10.20.10
12 86 75 4.3E-42
IPR009072
SUPERFAMILY
SSF47113
16 83 68 2.48E-23
IPR009072
PANTHER
PTHR10484:SF171
16 86 71 2.6E-51 –
PANTHER
PTHR10484
16 86 71 2.6E-51 –
PRINTS
PR00623
23 43 21 5.2E-40
IPR001951
Pfam
PF15511
25 79 55 2.7E-8
IPR035425
PRINTS
PR00623
45 59 15 5.2E-40
IPR001951
PRINTS
PR00623
60 72 13 5.2E-40
IPR001951
PRINTS
PR00623
72 83 12 5.2E-40
IPR001951

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0300700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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