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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001951
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 38 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.574s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0088269.1
n.a. TPA: histone H4.3 [Zea mays] gi|414589551|tpg|DAA40122.1| chr0 36036993 36037599 +
4 domain predictions
1 GO term
Lj0g3v0127649.1
n.a. TPA: histone H4.3 [Zea mays] gi|414589551|tpg|DAA40122.1| chr0 57561130 57561956 -
4 domain predictions
1 GO term
Lj0g3v0161739.1
n.a. TPA: histone H4.3 [Zea mays] gi|414589551|tpg|DAA40122.1| chr0 76128591 76129258 +
4 domain predictions
1 GO term
Lj4g3v2096060.1
n.a. n.a. chr4 28838444 28842352 +
2 domain predictions
1 GO term
Lj4g3v2096070.1
n.a. TPA: histone H4.3 [Zea mays] gi|414589551|tpg|DAA40122.1| chr4 28841802 28842352 -
4 domain predictions
1 GO term
LotjaGi1g1v0124700.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi1g1v0124700 LjG1.1_chr1 19735491 19735925 +
4 domain predictions
1 GO term
LotjaGi1g1v0124700.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi1g1v0124700 LjG1.1_chr1 19735614 19735925 +
3 domain predictions
1 GO term
LotjaGi1g1v0594200.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi1g1v0594200 LjG1.1_chr1 113419200 113420206 -
4 domain predictions
1 GO term
LotjaGi1g1v0594200.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi1g1v0594200 LjG1.1_chr1 113419623 113419934 -
3 domain predictions
1 GO term
LotjaGi2g1v0081300.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi2g1v0081300 LjG1.1_chr2 22144560 22145301 +
4 domain predictions
1 GO term
LotjaGi2g1v0081300.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi2g1v0081300 LjG1.1_chr2 22144678 22144989 +
3 domain predictions
1 GO term
LotjaGi2g1v0366700.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi2g1v0366700 LjG1.1_chr2 86406595 86407617 +
4 domain predictions
1 GO term
LotjaGi2g1v0366700.2
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi2g1v0366700 LjG1.1_chr2 86406637 86407147 +
4 domain predictions
1 GO term
LotjaGi2g1v0366700.3
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi2g1v0366700 LjG1.1_chr2 86406836 86407147 +
3 domain predictions
1 GO term
LotjaGi3g1v0277600.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277600 LjG1.1_chr3 55104614 55105054 +
4 domain predictions
1 GO term
LotjaGi3g1v0277600.2
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277600 LjG1.1_chr3 55104637 55105796 +
4 domain predictions
1 GO term
LotjaGi3g1v0277600.3
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277600 LjG1.1_chr3 55104743 55105054 +
3 domain predictions
1 GO term
LotjaGi3g1v0277700.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|V7AJ33|V7AJ33_PHAVU Histone H4; Found in the gene: LotjaGi3g1v0277700 LjG1.1_chr3 55123675 55127871 +
4 domain predictions
1 GO term
LotjaGi3g1v0277700.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277700 LjG1.1_chr3 55123877 55124188 +
3 domain predictions
1 GO term
LotjaGi3g1v0277900.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277900 LjG1.1_chr3 55135466 55136656 +
4 domain predictions
1 GO term
LotjaGi3g1v0277900.2
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277900 LjG1.1_chr3 55135788 55136099 +
4 domain predictions
1 GO term
LotjaGi3g1v0277900.3
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277900 LjG1.1_chr3 55135788 55136099 +
3 domain predictions
1 GO term
LotjaGi4g1v0300700.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700 LjG1.1_chr4 67479420 67483623 -
4 domain predictions
1 GO term
LotjaGi4g1v0300700.2
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700 LjG1.1_chr4 67479835 67480146 -
4 domain predictions
1 GO term
LotjaGi4g1v0300700.3
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700 LjG1.1_chr4 67479835 67480146 -
3 domain predictions
1 GO term
LotjaGi4g1v0300700.4
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700 LjG1.1_chr4 67479835 67480414 -
4 domain predictions
1 GO term
LotjaGi4g1v0300700.5
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700 LjG1.1_chr4 67483101 67483412 -
3 domain predictions
1 GO term
LotjaGi4g1v0300700.6
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700 LjG1.1_chr4 67483101 67483534 -
4 domain predictions
1 GO term
LotjaGi4g1v0300900.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300900 LjG1.1_chr4 67499799 67500523 -
4 domain predictions
1 GO term
LotjaGi4g1v0300900.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300900 LjG1.1_chr4 67500096 67500407 -
3 domain predictions
1 GO term
LotjaGi6g1v0129300.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129300 LjG1.1_chr6 34027378 34027689 -
4 domain predictions
1 GO term
LotjaGi6g1v0129300.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129300 LjG1.1_chr6 34027378 34027689 -
3 domain predictions
1 GO term
LotjaGi6g1v0129500.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129500 LjG1.1_chr6 34035458 34035769 -
4 domain predictions
1 GO term
LotjaGi6g1v0129500.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129500 LjG1.1_chr6 34035458 34035769 -
3 domain predictions
1 GO term
LotjaGi6g1v0129600.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129600 LjG1.1_chr6 34042389 34042700 -
4 domain predictions
1 GO term
LotjaGi6g1v0129600.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129600 LjG1.1_chr6 34042389 34042700 -
3 domain predictions
1 GO term
LotjaGi6g1v0133900.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0133900 LjG1.1_chr6 38674593 38675018 +
4 domain predictions
1 GO term
LotjaGi6g1v0133900.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0133900 LjG1.1_chr6 38674707 38675018 +
3 domain predictions
1 GO term