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IPR001951

Source: InterPro

Description

IPR001951 is a Histone H4.

<p>Histone H4 is one of the five histones, along with H1/H5, H2A, H2B and H3. Two copies of each of the H2A, H2B, H3, and H4 histones ensemble to form the core of the nucleosome [[cite:PUB00066796]]. The nucleosome forms octameric structure that wraps DNA in a left-handed manner. H3 is a highly conserved protein of 135 amino acid residues [[cite:PUB00004448], [cite:PUB00004388]]. Histones can undergo several different types of post-translational modifications that affect transcription, DNA repair, DNA replication and chromosomal stability. The sequence of histone H4 has remained almost invariant in more then 2 billion years of evolution [[cite:PUB00004448], [cite:PUB00003642], [cite:PUB00004015]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Associated Lotus transcripts 38

Transcript Name Description Predicted domains Domain count
Lj0g3v0088269.1
– TPA: histone H4.3 [Zea mays] gi|414589551|tpg|DAA40122.1|
Domains
12
Lj0g3v0127649.1
– TPA: histone H4.3 [Zea mays] gi|414589551|tpg|DAA40122.1|
Domains
12
Lj0g3v0161739.1
– TPA: histone H4.3 [Zea mays] gi|414589551|tpg|DAA40122.1|
Domains
12
Lj4g3v2096060.1
–
Domains
9
Lj4g3v2096070.1
– TPA: histone H4.3 [Zea mays] gi|414589551|tpg|DAA40122.1|
Domains
12
LotjaGi1g1v0124700.1
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi1g1v0124700
Domains
14
LotjaGi1g1v0124700.2
– Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi1g1v0124700
Domains
10
LotjaGi1g1v0594200.1
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi1g1v0594200
Domains
14
LotjaGi1g1v0594200.2
– Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi1g1v0594200
Domains
10
LotjaGi2g1v0081300.1
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi2g1v0081300
Domains
16
LotjaGi2g1v0081300.2
– Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi2g1v0081300
Domains
10
LotjaGi2g1v0366700.1
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi2g1v0366700
Domains
14
LotjaGi2g1v0366700.2
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi2g1v0366700
Domains
14
LotjaGi2g1v0366700.3
– Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi2g1v0366700
Domains
10
LotjaGi3g1v0277600.1
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277600
Domains
14
LotjaGi3g1v0277600.2
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277600
Domains
14
LotjaGi3g1v0277600.3
– Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277600
Domains
10
LotjaGi3g1v0277700.1
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|V7AJ33|V7AJ33_PHAVU Histone H4; Found in the gene: LotjaGi3g1v0277700
Domains
13
LotjaGi3g1v0277700.2
– Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277700
Domains
10
LotjaGi3g1v0277900.1
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277900
Domains
14
LotjaGi3g1v0277900.2
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277900
Domains
14
LotjaGi3g1v0277900.3
– Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi3g1v0277900
Domains
10
LotjaGi4g1v0300700.1
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700
Domains
14
LotjaGi4g1v0300700.2
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700
Domains
14
LotjaGi4g1v0300700.3
– Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700
Domains
10
LotjaGi4g1v0300700.4
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700
Domains
14
LotjaGi4g1v0300700.5
– Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700
Domains
10
LotjaGi4g1v0300700.6
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700
Domains
14
LotjaGi4g1v0300900.1
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300900
Domains
14
LotjaGi4g1v0300900.2
– Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300900
Domains
10
LotjaGi6g1v0129300.1
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129300
Domains
16
LotjaGi6g1v0129300.2
– Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129300
Domains
10
LotjaGi6g1v0129500.1
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129500
Domains
16
LotjaGi6g1v0129500.2
– Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129500
Domains
10
LotjaGi6g1v0129600.1
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129600
Domains
16
LotjaGi6g1v0129600.2
– Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129600
Domains
10
LotjaGi6g1v0133900.1
– Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0133900
Domains
14
LotjaGi6g1v0133900.2
– Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0133900
Domains
10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SSF47113 SUPERFAMILY 1 2.63