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LotjaGi4g1v0305600.1

Overview

Field Value
Gene ID LotjaGi4g1v0305600
Transcript ID LotjaGi4g1v0305600.1
Lotus japonicus genome version Gifu v1.2
Description Deaminase-related family protein; TAIR: AT1G48175.1 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|Q7Z6V5|ADAT2_HUMAN tRNA-specific adenosine deaminase 2; TrEMBL-Plants: tr|A0A0L9TEI2|A0A0L9TEI2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0305600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:68122050..68125936) extracted from Lotus japonicus Gifu genome v1.2.

TGTGGTTTCTACAGCTGGGTGCACTTTGATTGAGGTCCAATCTCCAGAGCTTGAAGTTCTTCTTCTGAGGGACTCTCTCT GGATTAGTTAGTTTTTTCTGTCTTGTTAATTTCCGATGTATAAAAAAAAAATTCATTTTTTTATAAAAAATATTAATTTA TTAAAATCTAACCTAAGTTCGCATATGACACGTCCTTTAGTTTGGCAATACTGTACTAATAAAGATTTAACGATCATCGT TGATCAGTTGCTCGCCACCATCGGCGCCGTTTCCCCGTCTTCTTCGCCACCACCAGCGCCGGCCTCGCTCGCCGGATTTT GCACATCGCCGTAGAACGCAGCCTTGGCAGACTTCACTGAGTCACCGTCGCTGTGCCTGTGTCGAGGGCGATCTCTCGCA GGTGCATATTACGTGTTTGATGAAATAGCTCTTTGAGTTTATTGGATAGTCCTTGATATGTTTAACTTGTAGTAGTATTT TTTATACAGATTACAGAGATTTTGCATCCTAATAATCCATTATCCTCTTGGACTTGGTCACATTGGTTACAGAGATTTTA CCTTCTTATCTCAAACCCTTGTTCTCTCACTCAGAGCATTCCTACTCAATCAGCTTAGCTCAATATGACCTCTCCAGAGA CACTTGCATTCATGGAACTTGCAGTACACCAGGTAAATCATTCCAACACCCTCTTTATAGTTTATATGAACCACTCATTT CTCCATCTGGTTGGATTGTTGATTGTTTTCTCTTTAAACTTAAACACCTTTTGTTTTCATCTTTTTGCTCTTATGTGACA GGCAAAGTTAGCTATGGATGCCCTTGAAGTGCCTGTTGGGTAAGTTACCTTCACAATTTCATACATTTTTGATACTATTG GAAGCATGACTTGTGAATGATTCAAGTTGTTAATAGGATTACAAAGTTTTAGGTGAGTGACTGTATTGACTGGCATCCAC ATTCATCATTGTTTCGACGGTAGTTAGACGTGCTATTCAATGGTTGTTGAAATCAGAAAATATTTAGGGATCAAATGGCT GATTTAATGATAAAGAGGGTTTTTATCAAAGGATGTCATAAAAAGATGTAAAACTGTTAATTAGATTCGGGACTTATGAC AAAACTCCTATTTAAAATTTTAGGTACTGTTTAAACAAAAAAAGTCAGTTATCTGCCTTGCAAAATTCATTTGAATTCAA TTTCAATGTCATTCCATGGATCAAAATGAATTTCAGTGTTTGGATGTTAGTGCTCCATGTTTTAATCCATTTGCTGTGGA AAGAATTGAGATGACGACACTAGAGACTGGACTTGCATGCATAGTCAGAGATTAATTTAGCTAATAATTATGGCTGATTT TGATTTGTCCTATAACATGCTTTACCATGGGCACATGTTAATCATTTACCTTTAATTCTAGGTAGATTTACTTGCTATTT GTTTACTGTCAAACTGGTTGAAATGAATCTTCGTTTATGTGTCATCTTGATGTTATACTGCAATGAATAAGATTGCAAGA ACTTTTTGCTTATCATTTAAGTGGAGGATTATTGCTCTTACTGACTATATTTATGCAAACTGTAATATCTGTTGCCAGCT GTGTAATTGCTGAGGATGGGAAGGTTATAGCCTCAGGCAGGAATCGAACTACTGAGACACGAAATGTAATATGATCCATG AGCTCTTTTCTGTTTTCATTTAGTTATCTTCTATACTTAGTTTCATATTTAGCTGTTCAACCTTTGTTACAATATCATGG TAGCAACATAAATATGAAGCTTGACTCATACATCTCTACAGTATGTACATCATAGGCTAAATTTCTTATCAATTGAACTC AAATATTGATTTATATGATTGAAAGTTTGTGGCACAATATTTATAATAATTAGATATGAGTTCTATGATTTAAAACCGTA TAGTGAAAACTGATTTAGTTATATTCTGACCTTAAAAACCATAAAACATTTTTTTGAACATTCTATGCACTCTTGAAGTG ACAGAAAATAGATAGAAAATGTGGAAAGTTGGAAAAGGTGAAAACATTAACTTAAATTGCTTCGTTGATATTAAGTTTAA TTTGGATGGCATTTACAAGTGAGTGATCACTCACACAACTTGTTAATATTTATATACATTTTGTCGTCACACAACTTGTT AATATTTGTTTTCCCCAATCCTTTTTAATCAACCATTAGGTTCATAGTTAAGTACTATCCTTTATGATATTGGCTTTGTG TTCCATTATTCGTCATAGAGAAAAAAGGATTTGACTATTCTAATAAAGTTTTCTAATATCAAATATGTCAATGTAAATAA GAAATTTTCATTCTTTATTTTGTATACAGAATGATTGTTACATGTTTCTTTAAAGCTTTATCGAATCCTCTAATCATGTT TTTTTTTGTTGGACTTTTCATCATTATTGTTAATTTTTTTCATCATCCATGAATTTCTGTTATTATTACTAAATCATTTT TTACAGGCTACCAGGCATGCAGAAATGGAAGCTATAGATGTGCTTCTAGAGCAGTGGCAGAAAAATGGACTTTCAAGGTC TGAAGTTGCTGAAAAGTTCTCAAAGTGCAGTCTTTATGTTACCTGTGAACCATGCATAATGTGCGCATCTGCTTTATCAA TTTTAGGCATGCTCCATCTAGTCTACCAACTGTTCAATCTATTACATTCACAGTCTTCATGTTGACCTTTCTAATTCAAT TTTTGTGTGTTATCTCAGGTATAAAGGAAGTATTTTATGGCTGTTCAAATGATAAATTTGGAGGTTGTGGATCAATACTA TCGTTGCATTTAAGTAACAATAGGTCACTCAATAAGTACGTCTCTTAACACTTAGACAAACCTTCTTTATATCTTTTCTT TTACTTATTTGTTTATCTTTTATTGTGTGCAAGTTATTCACTACTATTATTATTTTTTCACTAGCTGTTTTGTACAAATT TGCTACATCTCACGTTCTTTTGTTCACTATTTTCTTCTAATTAACAGTGAAGTTCCATCTGGAAGGGGTTTCAAATGTGT TGGAGGTATAATGGCATCAGAAGCTGTTCATCTCCTGCGAACATTCTATGAGCAAGGAAATCCCAATGGTAAGTTACTTT TAACTATTCCTACAAGCAGGCAGAAACCTTCAGAGCTTTATAAAAAATGTGTTGATTTTGTAAAAAATAAACAAAAAATG TGTTGATTTTATAAAAACTAAACCAATCACAATAGGTTTGTTCAAGTGTATCTTTGAAAGAGTGTGTTGGTAGCACTCCT CTTTAGATATTGTTTGTTATGTTGGTGTGGTGTGGTCCATATAGGCCATTGCAATAATACTGCTACAAAATTAGGATGCA TATAGCTCAGAGCTTTGAGTATATATATTTTTTCTTTAATTCCAATCTTATGTTTTTTAACTTCTTTGCAGCTCCAAAGC CCCATCGACCTCTAGCACGTCAGGCATGAAGTTGAACATGTATATTTCTAGGTTGAGCATTAACTTAGCTCTCACTTCGA GGCAAAAAGTGAAGGAACTCTTGTTATTGAGACAAATGTGTATTCATATTAACTCGAGTAGTATCCAAGCACATACTAAT TTTGTGGTTTTATGTTGATTTTTGGTTGTCTTGTGTTTAGTGACAGTTGCTAATGTGTGGGAAGAAGCTCATACTCTGTT GGAAAATCAACTTTTGTATGATTAGAATGTGTTTAAGAAGTTGAATCAAATGTATTAGTTGAATATTGTATTAACAATTC AAATTAATTGCCCAAAGGAATTGAAGCGTTTCAATTTAGAAATATTTGGTGAAGATAGAGTGAGAATCTCTGTTGTGTTG TATAACGGATTTTGTAAAATTTGGTGCCAAACTTTAGTTAAACTCAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0305600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACCTCTCCAGAGACACTTGCATTCATGGAACTTGCAGTACACCAGGCAAAGTTAGCTATGGATGCCCTTGAAGTGCC TGTTGGCTGTGTAATTGCTGAGGATGGGAAGGTTATAGCCTCAGGCAGGAATCGAACTACTGAGACACGAAATGCTACCA GGCATGCAGAAATGGAAGCTATAGATGTGCTTCTAGAGCAGTGGCAGAAAAATGGACTTTCAAGGTCTGAAGTTGCTGAA AAGTTCTCAAAGTGCAGTCTTTATGTTACCTGTGAACCATGCATAATGTGCGCATCTGCTTTATCAATTTTAGGTATAAA GGAAGTATTTTATGGCTGTTCAAATGATAAATTTGGAGGTTGTGGATCAATACTATCGTTGCATTTAAGTAACAATAGGT CACTCAATAATGAAGTTCCATCTGGAAGGGGTTTCAAATGTGTTGGAGGTATAATGGCATCAGAAGCTGTTCATCTCCTG CGAACATTCTATGAGCAAGGAAATCCCAATGCTCCAAAGCCCCATCGACCTCTAGCACGTCAGGCATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0305600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTSPETLAFMELAVHQAKLAMDALEVPVGCVIAEDGKVIASGRNRTTETRNATRHAEMEAIDVLLEQWQKNGLSRSEVAE KFSKCSLYVTCEPCIMCASALSILGIKEVFYGCSNDKFGGCGSILSLHLSNNRSLNNEVPSGRGFKCVGGIMASEAVHLL RTFYEQGNPNAPKPHRPLARQA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.140.10
2 177 176 2.2E-67 –
ProSiteProfiles
PS51747
4 132 129 27.536
IPR002125
PANTHER
PTHR11079:SF149
6 178 173 4.6E-74 –
PANTHER
PTHR11079
6 178 173 4.6E-74 –
SUPERFAMILY
SSF53927
6 169 164 7.26E-42
IPR016193
Pfam
PF00383
8 112 105 2.9E-21
IPR002125
CDD
cd01285
10 126 117 1.45362E-40 –
ProSitePatterns
PS00903
55 101 47 -
IPR016192

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0305600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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