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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0307200 |
| Transcript ID | LotjaGi4g1v0307200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat (LRR) family protein; TAIR: AT2G19330.1 plant intracellular ras group-related LRR 6; Swiss-Prot: sp|O64566|PIRL6_ARATH Plant intracellular Ras-group-related LRR protein 6; TrEMBL-Plants: tr|D2KTV4|D2KTV4_LOTJA Leucine rich repeat protein; Found in the gene: LotjaGi4g1v0307200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68290831..68296621) extracted from Lotus japonicus Gifu genome v1.2.
TGGGCACGCAAGTATACGGCTATTGTACTTGGATCACCACGTCACACTCACTCACTCACCCTGGCGGGCCCCGCTACCTT CTCCTGCCCTTCCCTTTGTTTCCTTCTCATCCGTACCACCTTCTCTTTCTCCATATATACCAACCACCTCTCTCTCTTTT CTCTTCAACCTCTCATCAACACATGCACTTCATTTTCATCATTCCTCTCTCTCTCATCTAATTTTGCTTCATTTTAGTTT TCTCTCATTGCATTCGCAATATTGTTCCCTTTTTTTCAATTCTGTTCGTTAATTATAACAACGATCTCTTGATGATCAAT CTCTTGTACATGTAAAACTGTAATATATATCGTGGTTTTGGAAAAAGATGATGTATGAACAGCAACGGTTTCAGATTCAG CAGCCGCCGGTGAAGAAGAAATCCACTGAGAGGAGCTGCAGATCGGGCATAGAAGAGGAGAAGCTAGAAATTGTGGATTT GAGTGGCATGTCCTTGGAATCTCTTCCCAATCCTTCTCTTAATTTAGCCATCATTTGCAAATTGGACCTCTCCAATAACA ATCTCCAGGTACCTATATATGTATTGTATACACTCACTGTTCATATTCATATGATCGCAACTTCAATCTCAATACCTTTT TCTCCATTATTTTAGTAGAATAAATTAACCTGATATATTCTGGGTTTAGTTTTCAGACCAAACTTTAGAAATGAAGAGTC ATCTGTTTGATCTTTTTAGTCTTTTTTTATTATATATTAATTGTTATTTAATAGTATTAATGAGTAATTAAATAGTTTTC AAATTCCACCCGTATCAATTTGTTATGGGAAAAAATTATAAATGAAAGTCATCTTCTTGCCAACATTGCTGTTGATTTGC TCTATATTTTGATTACCAAAAGACATTCAACATAATTTTTTTAATGAAAAAAAGGTATATCTAGCTATGAGAGAAATAAA AAAAGTCAATGAAGAGAAGGACACTGAAAAATATTATGATTATATGATAGCTGGTGTTGGAGAAACAAAATAAAAAAAAA AGACAGAAAGATGAGGTAAAACAAAAATAATTGAGGAGTTGTAGAAATGTACACCTAATTAATATAGACGGTTATTCCCT CCGTTCCTATTTAACTGTGCTTGAAGAATTTTTTTTTTCCTATTTAACTGTCCACTTAGCATTTCAAGAGTATTAAATGA TGTTTTTACATATAATGTCCTTAACAGAACAATAAATGAGGAGAGATAACACACACTTTAAAGGGTAAATTAGGAAAATA ATCTTCACTTTTTCTAAAAATCAACAAAATTAATTAACCCTTAATATGTGTGTCTCCACCCAAAGTTGACAGTTAAATAG GAACAGATGGAGTATGAAGAGAGAAAAAGATAAATGATAGATGTAATATGTGATGTGATCGGAAGAAAGTAAAGCATATA GTTATGTAAGTAGTATATATATTTGATGGGTGTTATCAACAAAAATCAACAAAATCAACAAAATTAATTACACCTTTAAT ATGTGTGACTTCACCCAAAGTTGACAGTTAAATAGGAACGGAGGGAGTATGAAGAGAGAAAAAGATAAATGATAGATGTA ATATGTGATGTGATCGGAAGAAAGTCAAACATATAGTTATATAAGTATATATATTTGATGGGTGCTATCAACACACTTTT TTTAAAAAGAGGACCAACACATTCTTTTAAACATATAATTAGTTCATTTTCAATATAGCCAATGTATTTTCTCTCTAATT AGAATTTTATTAACTTTGAAAAAAATAAACTAATTAGAAGGAGTGTGTCCAAAAATGCGTTCACATATGTAAGCACATTT TTCAGTGAAATATAAGAAAAGAAGAGAGAGTAAGTATAAAAAAATATGAATAACAAATATGGGAGATATAAAGAGAAAAT GAACAAAAATGAAATGAATCAAATAGTAGAGCTCAGTTGTGCAAGGTGTATGCACACATCACTACTATTTGTAAAAAAGC TATCTCTTATGTTATTAAGAGATGATAAGTCCAGTAGCAAGTGCTTTTCCTTTGTACTTATATATTTTCGTTTATACACA AACTACGGATATAGAACGGCAAGCTACTTATCAGATGCACATATATTGAATATATTTGGTAATTAGTATAAGATAGTAAT ATTTTGCACATGTCTCTTTTTCTGCTACCTGAACGCATGCATTATGTACGTGTAAGTTTATGTGGTTAGCCAGTTAGGTT ATACCTTAGTTAGCTAGCAGCTGTCTAATGTTAATATTTATAAAAAAAAAAAAAAATTCAAACTAGCAGCTGTTCAATAT TGCATCTTTCTTTGTCTTCCACCGTTTGATACGTCACTTTTTCGGCACATTATATAGTATATACTTACTCTCCAAATTGA ACTTTTTTTATCTACTAACAAATAAATGATGAAACAAAATTAAAGTTGGATAACTCCATAACTTGCATGACTATGTTTTT TTTTTTGACAAATTGCATGACTATGTTGAATTTTACTGTTTGAGGAAATAATTAATTAAATGAAATTTAAATTATAATGT TTAATTTACAGAATATTCCAGAGTCGTTAACGGCGAGACTGCTGAACATGGTGGTGTTGGACGTGCACTCTAACCAGCTC AGGTCCCTCCCAAACTCTGTTGGGTGCCTCTCAAAGCTCAAGGTTCTCAACGTCTCTGGCAACCTCATCGAGTACCTTCC CAAATCAATTGAGAATTGCAGGTTCATATAATTCACCTTTTTTATATCCTTTAATTTTTCTTTCTACTTTTGTTAAAAAC AATTAAAACTTATGTGCGATGTTGATTCCTTCATAAAACTTGAAATTTCCTTTTTCATTATAAGAGCTTGAACAAGAGTA TAAAGATAATTTAACTTTCTCGTGTACCACCTTATCAATATTAGTCAAGGATTAAAAATTAACAATACAAGATTATTTTG ATACAAATGGCTTCTTTTCCTCATCATCACCTCTATCTTTTTGGTTCAAGTAGTGAACATTTTAAAATTGGATTAAATTA TATATTGGTCGGTCCATGAATTGATTAATTAAGTTTTTTGAATTCAAATAGCACATCTTTCAAGTTTCAACTAAGTTTGT AATAGAAGCAATCTATATTTCTACTACATATTAAATTTAAGTTCTTATCTTAAAATCTCTCTATCATCAAGTCTTGTATT ATCTTCATTTTTTCATGCTTCCCAAAAATGTTAAAGAAATAAAAAGAAATAATCATCTCGATGGTCAATCTACTCGACTA TCAACCCACTTCTTGGTACGCCAAGCGGATGGGGGTCAAAATGGGTTGATGGATTTTGAAATCCGGCTCACCTATTTTGA TGAGTTCACCGCGATGGGCCAAACCCGTTTTCTCATTCCAAATTTTAAATTTTTTTTTTGGTATCTAGGTACTAGTAGGA TTTAAACTTAAAATTTGAGAAATTTTAATTCGTCAAGTACCATTTAGGCTATTCATACCAGTATTCCAAATTTTAATTGA TTGGGAACAGTTAAAGGTTGTGTTTTTTTTTAATTTATCAAATCTGACAGTAAAAACTAACATACATAATTTTTTCATAA ATTTTTAAATGTATTTCATCCTTTTAATGATTTCCTGGTGACAAATTTTTTCAAGGACAAAATTGACTATTAAGTTCACT AGACCTAAAACATTCTTACGAGTTCATCACCTCTTAGACAAACCACACAAAGTGCCCCAAACAGTCCTCGGCACTTGATC ATATATAAGTAGGATTTCCACTTTATGATATGTGGACCGTTTTTTTTCCTCCTTGTTTCTTTATCATTCTTTCACTTGAC ATTTGGGGCCTCAAGAAAACGACAACAAAATCACAAGTCTTGTGTCATCATTAGATTCGAAAGCTTTATAAATCATAAAT TAATAAACATGTCATAATGTGTCACAACGAATAATCCTAGATATATACCCTTAGCTAGCTATTAAGTATAACCTTATAAA ATAGGTTGTTTTACTTATATCTTTGAATTACTTAGCATTTTTTTGTTGTGATGACGAGTTACATCTTGACTGAAAATATA AATTGATTTGCCTTATACATAATCACTGAATTTACGCCCTAATCAATAATTTTTGAGTGAATGGTCAAAATTATCGTCGA AAGTGTTGCATTAACAAACTCGTCCTTGTGACTAGACAAATCTTGAAAGTATTTTATTCTTCTATGAACGAATTTGACAA TGCGTTCAACGCTTTTGGAGACAAATTTAATTGTTTACTCCAAATTTAGAAGCTGAATTTTAAATATAACTTTGTGATTA ATTTTGAAAAATATAATCAACTAATTTTGAACATGAACTTTGACAATGCAGAGCATTAGAAGAATTGAATGCAAACTTCA ACAAGCTGAGCCAGCTACCAGACACAATGGGGTTTGAACTCCTAAACCTAAAGAAGCTCTCAGTAAACTCCAACAAGCTC GTCTTCCTCCCACGCTCCACCTCACACCTCACCTCACTCAAAATCCTCGACGCACGTTTGAACTGCCTTAGATCCCTCCC AGATGATCTCGAGAATCTCATCAACCTCGAAACCCTCAATGTCAGCCAAAACTTCCAGTACTTGGACACCCTCCCTTACT CCATAGGCCTCCTCTTGTCCCTCGTGGAACTCGACGTCAGTTACAACAGAGTCAAGTCCTTACCTGACTCCATCGGCTGC CTCAAGAAGCTGCAGAAGCTCAGCGTTGAAGGGAACCCGCTCGTTTCGCCGCCGCCGGAGGTGGTGGAGCAAGGGCTGCA CGCGGTGAAGGAGTACTTGTGTAATAAGATGAACTCGGCACATCAAAGCCCAACGAAGAAGAAGTCGTGGGTGGGGAAGT TGGTGAAGTATGGGACTTTTAATGGACACGCGCGGAGTGGTCCGCGTGAGGAGCGTGAGGCTTTTATTGTGGATCATGAG TACAGGTCCATTGATGGACTCGCTTCGCCGCGATACATGGGAATGTTTTCTCCTCGTCGGTTGTTCTCGCCTCGTAGTTA CTTTAGCAATTGAGGAAGGAGGGTGGTGCGAATAGTTATACATGCATGGTGTGCTTGCTTGCTTGCTTCAGTGATGAAGT GTTTTTTGTTTGGTCATATCTGCTTTGTTTTTGTTCTTTTTTGGTGAGCTGAAGTAGCTAGATTAATGAATGCATCGTGG AAATGGTGGTAGGCTTCTTTAGAAGCAGATCAGGGCCGGCCCAACTGCAATTGAGGCCTAAAGCAAACTTTAAAGTGATG CCTAAGTGATGCATTTTTGTTTAAAAAATTTCTTTATTAATTTTTATTTAAATTTTATTTTTCGAGCTTTTTGAGATGTA AAATCATTTATTAAATTATCCTAATCAATTTGTATTGCATCCAATTCCAATTAGTTAGTACTTTAAGGTCCTTTTATATT GTAGAAAAAAGAAATTTTTATTGTATCAAAACTCAACATAACCATGCCATCACAGCAAAGAGGCTAGAGCTAACTACTTA CAGTAAATGAAGTTTTGACTTCCTATTGATCTTCTTCGGTTCTTCTCAATGGCTAATCAAAGAAAAAAAATATGGAGGAG GATTCTTTTACAAAGGATATGAGAGTTTGAGAGACAAAGACTCTATTTTTCCCCCTTTGAGGCTTTGAGAGACTGAGAGA GTGGCAGGGAGAGTAGAACCGTTATCAGGATTTAATTGAGAGAAAACGAGAGGTCAGAGAATAAAATGTAAGGCCCAAGT TTTTAAACTTATGCCAAGTAAATAGAATCCT
CDS sequence (LotjaGi4g1v0307200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTATGAACAGCAACGGTTTCAGATTCAGCAGCCGCCGGTGAAGAAGAAATCCACTGAGAGGAGCTGCAGATCGGG CATAGAAGAGGAGAAGCTAGAAATTGTGGATTTGAGTGGCATGTCCTTGGAATCTCTTCCCAATCCTTCTCTTAATTTAG CCATCATTTGCAAATTGGACCTCTCCAATAACAATCTCCAGAATATTCCAGAGTCGTTAACGGCGAGACTGCTGAACATG GTGGTGTTGGACGTGCACTCTAACCAGCTCAGGTCCCTCCCAAACTCTGTTGGGTGCCTCTCAAAGCTCAAGGTTCTCAA CGTCTCTGGCAACCTCATCGAGTACCTTCCCAAATCAATTGAGAATTGCAGAGCATTAGAAGAATTGAATGCAAACTTCA ACAAGCTGAGCCAGCTACCAGACACAATGGGGTTTGAACTCCTAAACCTAAAGAAGCTCTCAGTAAACTCCAACAAGCTC GTCTTCCTCCCACGCTCCACCTCACACCTCACCTCACTCAAAATCCTCGACGCACGTTTGAACTGCCTTAGATCCCTCCC AGATGATCTCGAGAATCTCATCAACCTCGAAACCCTCAATGTCAGCCAAAACTTCCAGTACTTGGACACCCTCCCTTACT CCATAGGCCTCCTCTTGTCCCTCGTGGAACTCGACGTCAGTTACAACAGAGTCAAGTCCTTACCTGACTCCATCGGCTGC CTCAAGAAGCTGCAGAAGCTCAGCGTTGAAGGGAACCCGCTCGTTTCGCCGCCGCCGGAGGTGGTGGAGCAAGGGCTGCA CGCGGTGAAGGAGTACTTGTGTAATAAGATGAACTCGGCACATCAAAGCCCAACGAAGAAGAAGTCGTGGGTGGGGAAGT TGGTGAAGTATGGGACTTTTAATGGACACGCGCGGAGTGGTCCGCGTGAGGAGCGTGAGGCTTTTATTGTGGATCATGAG TACAGGTCCATTGATGGACTCGCTTCGCCGCGATACATGGGAATGTTTTCTCCTCGTCGGTTGTTCTCGCCTCGTAGTTA CTTTAGCAATTGA
Protein sequence (LotjaGi4g1v0307200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMYEQQRFQIQQPPVKKKSTERSCRSGIEEEKLEIVDLSGMSLESLPNPSLNLAIICKLDLSNNNLQNIPESLTARLLNM VVLDVHSNQLRSLPNSVGCLSKLKVLNVSGNLIEYLPKSIENCRALEELNANFNKLSQLPDTMGFELLNLKKLSVNSNKL VFLPRSTSHLTSLKILDARLNCLRSLPDDLENLINLETLNVSQNFQYLDTLPYSIGLLLSLVELDVSYNRVKSLPDSIGC LKKLQKLSVEGNPLVSPPPEVVEQGLHAVKEYLCNKMNSAHQSPTKKKSWVGKLVKYGTFNGHARSGPREEREAFIVDHE YRSIDGLASPRYMGMFSPRRLFSPRSYFSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 17 | 17 | - | – | |
| MobiDBLite | 1 | 23 | 23 | - | – | |
| Gene3D | 2 | 140 | 139 | 6.0E-27 | ||
| PANTHER | 7 | 346 | 340 | 7.6E-179 | – | |
| PANTHER | 7 | 346 | 340 | 7.6E-179 | – | |
| SUPERFAMILY | 24 | 265 | 242 | 6.53E-43 | – | |
| ProSiteProfiles | 32 | 53 | 22 | 5.294 | ||
| SMART | 53 | 72 | 20 | 170.0 | – | |
| SMART | 53 | 76 | 24 | 17.0 | ||
| ProSiteProfiles | 55 | 76 | 22 | 6.888 | ||
| Pfam | 58 | 113 | 56 | 1.8E-8 | ||
| SMART | 77 | 96 | 20 | 380.0 | – | |
| SMART | 77 | 99 | 23 | 8.5 | ||
| ProSiteProfiles | 79 | 100 | 22 | 6.58 | ||
| SMART | 100 | 119 | 20 | 20.0 | – | |
| SMART | 100 | 123 | 24 | 0.3 | ||
| ProSiteProfiles | 102 | 123 | 22 | 6.765 | ||
| SMART | 123 | 142 | 20 | 6.6 | – | |
| SMART | 124 | 146 | 23 | 130.0 | ||
| ProSiteProfiles | 125 | 146 | 22 | 5.987 | ||
| Gene3D | 141 | 275 | 135 | 1.3E-25 | ||
| SMART | 147 | 166 | 20 | 71.0 | – | |
| SMART | 147 | 169 | 23 | 13.0 | ||
| ProSiteProfiles | 149 | 170 | 22 | 5.833 | ||
| SMART | 170 | 189 | 20 | 100.0 | – | |
| SMART | 170 | 193 | 24 | 8.1 | ||
| ProSiteProfiles | 172 | 194 | 23 | 6.472 | ||
| ProSiteProfiles | 195 | 218 | 24 | 5.409 | ||
| SMART | 218 | 240 | 23 | 7.8 | ||
| SMART | 218 | 237 | 20 | 14.0 | – | |
| ProSiteProfiles | 220 | 241 | 22 | 7.489 | ||
| SMART | 241 | 264 | 24 | 70.0 | ||
| ProSiteProfiles | 243 | 264 | 22 | 5.071 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0307200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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