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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0309300 |
| Transcript ID | LotjaGi4g1v0309300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-galactosidase; TAIR: AT3G13750.1 beta galactosidase 1; Swiss-Prot: sp|P48980|BGAL_SOLLC Beta-galactosidase; TrEMBL-Plants: tr|A0A0R0FIV9|A0A0R0FIV9_SOYBN Beta-galactosidase; Found in the gene: LotjaGi4g1v0309300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68527708..68532991) extracted from Lotus japonicus Gifu genome v1.2.
TGTGCAGCCACTGGCTCAGTGACATATGATCACAAAGCCATTCTTGTCAATGGGCAGAGAAGAATTTTGATCTCTGGCTC CATTCACTATCCAAGAAGCACACCTCAGGTACTCACTCATGGCTGCATCAAATTTGGCATTCAGTCATTTTGAAAAAACT TCTTACAATTGATTCTCACGTTAGTCCAAAATGTTAGCATTAACTAAAGTTTTGTGAGTGACTGCAGATGTGGCCAGACC TTATTCAAAAAGCCAAAGAGGGAGGGTTAGATGTTATACAAACCTATGTATTTTGGAATGGACATGAGCCTTCTCCAGGA AAGGTAGTAATGCAAATGTTTACTTCCTTATTTCTTCACTAGTGAAAATGTTAGCCACAAAGCTCATCCATTTTTTTCAT GGATGTTTTGAAAAACAAAAAATTCAGTACTATTTCGAGGATAGGTACGACTTAGTCAAGTTCATAAAGCTTGTGCAGCA AGCTGGCCTTTATGTTCATCTCCGCATTGGTCCCTACATTTGTGCTGAGTGGAACTTTGGGTAATGATTTTCATAACATT GCCTTATAATTCTACATATTAAATATATGATAGTTCATTCTTGATGAAAAGGGACATTACTGCTTAACCAGCACTTTAAG ATCTTCTCTTTCTGTTTGATTTTCAGGGGATTTCCTGTTTGGCTCAAGTATGTTCCGGGTATTGTTTTCAGAACAGACAA TGAGCCTTTTAAGGTTAGATTTTTCAATTTTGGTCATCATCATTAAATAATTGTTACTGTTAAATTATGTCAATTTCTAA GCAAATAATTGATTCTGAAATGATATGCAGGCAGCAATGCAAAATTTTATTGAGAAGATTGTCAGCATGATGAAGGCAGA GAGATTGTTTCAGACACAAGGAGGTCCAATAATTTTGTCCCAGGTAAAAGAAGTGGGAAATAAGTAAGAAACTTATTCAT ATCATTGCTTTCAGTTTCATATTTTGCTATTTTTATCTAGAAAGTTTTAAGCCAACCAATCATTTTTTTTTAAAAAGCCA TTTTCAATCAATTAATTTTTATTTTTTTTCCAATCGAATATGATAGATAGAGAACGAGTTTGGACCAATGGAGACGTCCA TTGGTGCTCCTGCAATAGCTTACACGAAATGGGCTGCTCAAATGGCTGTAGGATTAAATACTGGAGTCCCATGGATTATG TGCAAGCAAGAAGATGCTCCTGATCCTGTTGTAAGCACCTCTTCGAACTTCGAACGAGTTTCCAAACATGCACATAATTT GTTGTTTTTCTACTATTGAAAATTTGATGTTGTTGGTTCATTGGTTCATATAGATTAACACCTGCAATGGGTTCTACTGC GAAAATTTCACCCCAAACAAGAACTACAAACCCAAAATGTGGACTGAAAACTGGACTGGCTGGTAAGACTTGCAAGTAAA TGGCAAAAATATCTGATCTTGATCCTGTATTTAGTTTTGTTATGTCACCTGTTGTGCAGGTTCACTGAGTTTGGTGGTGC GGTCCCTCGTAGGCCAGCACAAGACTTGGCATTCTCAGTTGCGAGATTCGTACAGAATGGGGGCTCATTTGTTAACTACT ATATGGTAGGTTACACTTGCCCATTGCAATTATGATTCATTCAGGGTATTAAATCACGGACAAATGCAGGTTGATCCGGC CTCAATTGTGGTCGCGATGAGAATGTGGATTGTGGAGACTCCAAAACCCATTATATTGCGGCCACAATTGCGGTTGCTGC AGTTTGAAACCCTTGATTCATTCATTGTCAATATTTCTCACTTCTTTATGTAGTCTAATGTGTGTCATTTTTGGGTCCAG TATCATGGAGGAACTAACTTTGGCCGAACATCAAGTGGTCGCTTCAAAGCCACAAGCTATGACTTTGATGCCCCAATTGA TGAATATGGTATGCAAATGATATAAGGTTTTGCAAATTTACTGGGATGATGACAACATACACATTTGAATCTCTTAAAAA CATATTGTACTTGTTCGAAAAATTTTCTACAATTGATTCTAAAGTGAGAATCAATTCTAAGGAGAAGTTTTGGTGAGTAG CTTCTGAAGAAAGAGAAGCTGGTTCAAACATGCTAACAGTTGCTTTTTGTAACTTGCTTAGATATATTTTCACATTAGTG AATAGTTTAAAGCTTGTTTAACTATATCAGGACTTCTTAACGAACCAAAATGGGGGCATCTGAGAGATTTACACAAAGCA ATAAAACTATGTGAACCAGCTTTGTTGTCTGTAGATCCCACGGTGTCCTGGCCTGGAAATAACCTTGAGGTAAAGTCCAT AAGCTGGTTTCTGAGTTTGTGCGTGTTTGGATCATCATTATGAGAATTGAGTTTCAATAGAAATGATTTTGTTAAAACTG ATTTTGGTAAAAGTTAGTTAAAATAAGTTGAAAGTGCAGTGATTTATGTTTGGATCGTTTATGCGAAAAGTGATTTCTAT TGGGTGATGTTGTGAAACTTATCTATGAAATCTCACAATTGATTATATCCACCACCGCAGAAACTACTTTCTCTAGCTTC CGCAAAATTGATTTTCTATGTCGATTGCCCCATCTATATAACCACCTAAATGTGATTCTAGTCAATGAAAATGGATATAT TTGTTGATGTTACCTTAGGTACATGTGTTCAAGGAAAAATCGGGTGCTTGTGCTGCATTCCTTGCAAATTACGACACCAA ATCTTCCGCAACACTTACATTTGGAAATGGAAAATATGACTTACCACCTTGGTCTATCAGCATTCTTCCTGACTGCAAAA CTGCAGTTTTCAACACTGCAAGGGTAAGGAATACTGCTTGCCATGTTAAATGCTTGTTTGTTAGTCACTTAGTCCTGCAG CAGCAACGTAAAACTAGGCGTATATTTAATAGGAACAAATGATCCATATTGCTGACTCCACTTAGTGGGATAAAGCTTTT GCTTAGGTTTATGTTTATGTTATGAACATACATGTTTTCAATTTTATTCAGCTTGGTTCTCAAAGCTCCGAGATGAAGAT GATTGCTGTAAACAGTGGATTTTCCTGGCAGTCATACAATGAAGAACCAGCATCATCCAGTGTAGATGATCAAATCACAG CATATTCACTATGGGAGCAGATTAATGTCACTCGAGATTCAACAGATTATTTGTGGTATATGACAGAGTAAGTGTCTTTC AATTGATCATGTCTCTGACTTGTAAATTTAAACGCTTACAATTGGAATGCTCAGTGTTTAATATATTCTTTCCATCTAAT AAACACTAGTATCCCTTGTTCAGTGTCAATATTAATCCCAATGAAGGTTTTATAAAGACTGGACAATCCCCTCTTCTTAC TGTAATGTCTGCAGGGCATGTTTTGCATGTTTTCATTAATAGTCAACATTCAGGTAAATAAAACTATTAATCTTTTTCCT GGTTTAGTGTTTTGTTAGGTCAAACTCCGGTTTTATTGATCCATCTCATGTACGAAAAATGCAGGAACTGTGTACGGGGC ATCGAGTTCTCCAAAATTAACATTTAGTGACAGGGTTAACCTGAGAGTTGGAAATAACAAGATTTCTTTACTTAGTGTTG CTGTGGGTCTCCCGGTTAGTTCTGTCACATTCTTTGTGCCTATGTGATGTGATTTTTATAACATTTTTAGTTTTCAGAAA TTGTTTACATTTGTAATCTTATTGTATATACTAAAATTATGAATGCCAGAATGGTGACCTGCACTTTGAGACATGGAATG TTGGCGTGTTAGGCCCGGTCACACTTGATGGTCTAAATGAGGGAATTAGAGACTTGTCGCGGCAGAAATGGTCCTACAAG GTTTTCTAGCAATGTTCTGCTTGGTAGCAATGTTGAAATTTTTTTAGTTAGAGATTTACTCATTTTTGAACATGTTGATG GGCAGATTGGTCTAAAGGGAGAAACATTAAACCTTCACACTATAAGTGGGAGTGCCTCTGTTGAATGGGTACAAGGATCA TTAATAGCTAAAAATCAACCTTTGACATGGTACAAGGTAAGATTAAATTTTCAACAAATGTTGTATTTCTGCGATTCTGA TCAATCTGAGCCTGAATAATTTTATGCTCTCATGTCACTAGACAACTTTTAACACACCAGCAGGCAATGATCCATGGGCT CTAGATATGAGTAGTATGGGAAAGGGTCAAGTATGGATAAATGGTCATAGCATTGGACGCCATTGGCCTGGATATATAGC AAATGGTGAATGTGGGGAATGTTATTATGCTGGAACCTATACTAAAACAAAATGCAGGACAAATTGTGGAGAACCCTCCC AGAGATGGTAAGAATTTGTACAAGAGTGAATGGTCAATTTCATTCCTGGAAGATTAGGGCGCTGACAAGTTGGTCCCTAA AAGAAGGAAAATATGTTAGAGATCAACTAAAACGTCGGTCAAGTTAGTCTTTGTAGGGACTAACTCGACAGATTTTTTGC ACGTCCAGGGATTTCCAAACGTATTTACTTCTTCTAGCGACTAACTTGTCAGTGCCATAATCTTTCAGGAATGAAATTAA CCATTTAATCTTTATACAACATAGTTTCCAACAGTGAAAGGATTAATTTGAACATCATGACAATGTGTTGTTGGCATTGG ACAGGTACCATGTTCCTCGGTCGTGGCTGAACCCAAGTGAGAACTATCTGGTTGTGTTTGAAGAATTTGGAGGCGATCCT GCAGGAATTTCTCTAGTGAAAAGAACAACGGCAAGCGTTTGTGCTGATATATATGAAACTCTAATGACTGGACAGATGCT AGACTCTGGAAATGTTAATACCAAAGCTCACTTGTTGTGTCCACCTGGGAAAAAAATCTCACATATCAAATTTGCAAGCT ATGGATTGCCACAGGGAAATTGTGGTAATTTTCAAGAGGGGAAATGTCATGCTCACAAATCATATAATGCTCCTCAAAGG GTATCCCCACATTCCAAGAGAAATCCTAATAAGCTAGGATTTTTGACAATTTAGATATCAAATGATACACTAGTTTAACT TACTGGATAAATGATTTAGCTTTGAATGATTTCATTTTTGTGTCTAGTTTCAACACATATCTCTCTTGCTTATTGTTGAC ATTATGTTTTTCTTCTACTCTGATTGTCCTTGAATTGTTTTTTTTTGTGGTAGAGCTGCATTGGCAAGCAAACTTGCATG GTAACTGTAGCTCCTGAAGTTTTTGGGGGAGACCCATGTCCCGGATTTGCAAAGAAATTCTCAGTTGAGGCCCTATGCAG CTAG
CDS sequence (LotjaGi4g1v0309300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTATACAAACCTATGTATTTTGGAATGGACATGAGCCTTCTCCAGGAAAGGTACGACTTAGTCAAGTTCATAAAGCT TGTGCAGCAAGCTGGCCTTTATGTTCATCTCCGCATTGGTCCCTACATTTGTGCTGAGTGGAACTTTGGGGGATTTCCTG TTTGGCTCAAGTATGTTCCGGGTATTGTTTTCAGAACAGACAATGAGCCTTTTAAGGCAGCAATGCAAAATTTTATTGAG AAGATTGTCAGCATGATGAAGGCAGAGAGATTGTTTCAGACACAAGGAGGTCCAATAATTTTGTCCCAGATAGAGAACGA GTTTGGACCAATGGAGACGTCCATTGGTGCTCCTGCAATAGCTTACACGAAATGGGCTGCTCAAATGGCTGTAGGATTAA ATACTGGAGTCCCATGGATTATGTGCAAGCAAGAAGATGCTCCTGATCCTGTTATTAACACCTGCAATGGGTTCTACTGC GAAAATTTCACCCCAAACAAGAACTACAAACCCAAAATGTGGACTGAAAACTGGACTGGCTGGTTCACTGAGTTTGGTGG TGCGGTCCCTCGTAGGCCAGCACAAGACTTGGCATTCTCAGTTGCGAGATTCGTACAGAATGGGGGCTCATTTGTTAACT ACTATATGTATCATGGAGGAACTAACTTTGGCCGAACATCAAGTGGTCGCTTCAAAGCCACAAGCTATGACTTTGATGCC CCAATTGATGAATATGGACTTCTTAACGAACCAAAATGGGGGCATCTGAGAGATTTACACAAAGCAATAAAACTATGTGA ACCAGCTTTGTTGTCTGTAGATCCCACGGTGTCCTGGCCTGGAAATAACCTTGAGGTACATGTGTTCAAGGAAAAATCGG GTGCTTGTGCTGCATTCCTTGCAAATTACGACACCAAATCTTCCGCAACACTTACATTTGGAAATGGAAAATATGACTTA CCACCTTGGTCTATCAGCATTCTTCCTGACTGCAAAACTGCAGTTTTCAACACTGCAAGGCTTGGTTCTCAAAGCTCCGA GATGAAGATGATTGCTGTAAACAGTGGATTTTCCTGGCAGTCATACAATGAAGAACCAGCATCATCCAGTGTAGATGATC AAATCACAGCATATTCACTATGGGAGCAGATTAATGTCACTCGAGATTCAACAGATTATTTGTGGTATATGACAGATGTC AATATTAATCCCAATGAAGGTTTTATAAAGACTGGACAATCCCCTCTTCTTACTGTAATGTCTGCAGGGCATGTTTTGCA TGTTTTCATTAATAGTCAACATTCAGGAACTGTGTACGGGGCATCGAGTTCTCCAAAATTAACATTTAGTGACAGGGTTA ACCTGAGAGTTGGAAATAACAAGATTTCTTTACTTAGTGTTGCTGTGGGTCTCCCGAATGGTGACCTGCACTTTGAGACA TGGAATGTTGGCGTGTTAGGCCCGGTCACACTTGATGGTCTAAATGAGGGAATTAGAGACTTGTCGCGGCAGAAATGGTC CTACAAGATTGGTCTAAAGGGAGAAACATTAAACCTTCACACTATAAGTGGGAGTGCCTCTGTTGAATGGGTACAAGGAT CATTAATAGCTAAAAATCAACCTTTGACATGGTACAAGACAACTTTTAACACACCAGCAGGCAATGATCCATGGGCTCTA GATATGAGTAGTATGGGAAAGGGTCAAGTATGGATAAATGGTCATAGCATTGGACGCCATTGGCCTGGATATATAGCAAA TGGTGAATGTGGGGAATGTTATTATGCTGGAACCTATACTAAAACAAAATGCAGGACAAATTGTGGAGAACCCTCCCAGA GATGGTACCATGTTCCTCGGTCGTGGCTGAACCCAAGTGAGAACTATCTGGTTGTGTTTGAAGAATTTGGAGGCGATCCT GCAGGAATTTCTCTAGTGAAAAGAACAACGGCAAGCGTTTGTGCTGATATATATGAAACTCTAATGACTGGACAGATGCT AGACTCTGGAAATGTTAATACCAAAGCTCACTTGTTGTGTCCACCTGGGAAAAAAATCTCACATATCAAATTTGCAAGCT ATGGATTGCCACAGGGAAATTGTGGTAATTTTCAAGAGGGGAAATGTCATGCTCACAAATCATATAATGCTCCTCAAAGG AGCTGCATTGGCAAGCAAACTTGCATGGTAACTGTAGCTCCTGAAGTTTTTGGGGGAGACCCATGTCCCGGATTTGCAAA GAAATTCTCAGTTGAGGCCCTATGCAGCTAG
Protein sequence (LotjaGi4g1v0309300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLYKPMYFGMDMSLLQERYDLVKFIKLVQQAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIVFRTDNEPFKAAMQNFIE KIVSMMKAERLFQTQGGPIILSQIENEFGPMETSIGAPAIAYTKWAAQMAVGLNTGVPWIMCKQEDAPDPVINTCNGFYC ENFTPNKNYKPKMWTENWTGWFTEFGGAVPRRPAQDLAFSVARFVQNGGSFVNYYMYHGGTNFGRTSSGRFKATSYDFDA PIDEYGLLNEPKWGHLRDLHKAIKLCEPALLSVDPTVSWPGNNLEVHVFKEKSGACAAFLANYDTKSSATLTFGNGKYDL PPWSISILPDCKTAVFNTARLGSQSSEMKMIAVNSGFSWQSYNEEPASSSVDDQITAYSLWEQINVTRDSTDYLWYMTDV NINPNEGFIKTGQSPLLTVMSAGHVLHVFINSQHSGTVYGASSSPKLTFSDRVNLRVGNNKISLLSVAVGLPNGDLHFET WNVGVLGPVTLDGLNEGIRDLSRQKWSYKIGLKGETLNLHTISGSASVEWVQGSLIAKNQPLTWYKTTFNTPAGNDPWAL DMSSMGKGQVWINGHSIGRHWPGYIANGECGECYYAGTYTKTKCRTNCGEPSQRWYHVPRSWLNPSENYLVVFEEFGGDP AGISLVKRTTASVCADIYETLMTGQMLDSGNVNTKAHLLCPPGKKISHIKFASYGLPQGNCGNFQEGKCHAHKSYNAPQR SCIGKQTCMVTVAPEVFGGDPCPGFAKKFSVEALCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 9 | 267 | 259 | 4.2E-77 | – | |
| PANTHER | 15 | 754 | 740 | 0.0 | – | |
| PANTHER | 15 | 754 | 740 | 0.0 | ||
| Pfam | 18 | 262 | 245 | 3.1E-85 | ||
| SUPERFAMILY | 19 | 267 | 249 | 6.2E-76 | ||
| PRINTS | 37 | 56 | 20 | 1.7E-62 | ||
| PRINTS | 94 | 109 | 16 | 1.7E-62 | ||
| ProSitePatterns | 96 | 108 | 13 | - | ||
| PRINTS | 173 | 188 | 16 | 1.7E-62 | ||
| PRINTS | 210 | 225 | 16 | 1.7E-62 | ||
| PRINTS | 230 | 246 | 17 | 1.7E-62 | ||
| Pfam | 270 | 340 | 71 | 2.3E-23 | ||
| SUPERFAMILY | 325 | 495 | 171 | 4.37E-25 | ||
| SUPERFAMILY | 505 | 660 | 156 | 2.55E-30 | ||
| Gene3D | 512 | 654 | 143 | 4.9E-15 | ||
| PRINTS | 540 | 554 | 15 | 1.7E-62 | ||
| PRINTS | 567 | 583 | 17 | 1.7E-62 | ||
| ProSiteProfiles | 670 | 756 | 87 | 17.507 | ||
| Gene3D | 671 | 756 | 86 | 1.0E-11 | ||
| Pfam | 678 | 755 | 78 | 9.0E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi4g1v0309300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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