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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0310700 |
| Transcript ID | LotjaGi4g1v0310700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock transcription factor; TAIR: AT2G26150.1 heat shock transcription factor A2; Swiss-Prot: sp|P41152|HSF30_SOLPE Heat shock factor protein HSF30; TrEMBL-Plants: tr|V7CBJ1|V7CBJ1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0310700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68692458..68694870) extracted from Lotus japonicus Gifu genome v1.2.
TCTCATATAAAAATGAGAATTCCCTCCGTGCAAATGGCAAGTAATAAGCAGGAAAACGTGGCTATTGAAACTGACTTTCC AAAAATAAACAGACAGCACAGAGATACGCTATCTTAATTCCTTCAGACTTCATCTGTGTCACTCACAGTGTTCAGTCTCT CTCTCTCTCTCTCTATCTATCAACCTCTTTATTTTCTTTTTCCAGAAAAAGAAAATTTCAATTTTAATTTGCACATTTAT TTATTATTTATCACCATCAAGATATCTATAAATGGAAACCAAACCAGACAGTGCAACCTTTCCCCAAGCACACTCGCATC GCATCAACAACACAGTGCAACACCGAAAAACCGAAACAACATAGAACCCTTCGTTCAGAAGAAGCCATGGAAGCAGAAGG AGCAGCGAGAGTCAAAGCAGAGTTACTGGACGACACCAGTTCCGGCCTCTCCGACGACGGTTTCAGCGAAATCAAAGAGC TAGACGCCGTTCACATCAAACAAGAGCTTCCTGACGCCGCCGCCGCCTTGCCGAAACCAATGGAAGGGTTGCACGAGGTG GGCCCACCGCCCTTCCTCAAGAAAACATACGAAATGGTGGATGACCCGGACTCCGACCCGATTGTGTCATGGAGCCCCGC CCGTGACAGCTTCATCGTCTGGGACTCTCACGAATTCTCCAAAATCATTCTCCCTAAATACTTCAAACACAGCAATTTCT CCAGCTTCATTCGCCAGCTCAACACCTATGTCAGTCCAAATTTCTCAATCACTTGCACATAACATGTTTGATAAATGCTT AAGTCACAGATATAACAAGTTTTATGAGCAGTTTTTTATGCATACTTATTGTATAGTTGTAATCTCATTAGTTATTTATG TGAGTGTGAAGTAATTGAGCTTTGTGATTCCAATGACATGTGTTTGTTTTCCTTTTTGGTAATTATGGGAACAGGGGTTT AGGAAGGTTGATTCAGACCGTTGGGAGTTTGCAAATGAAGGGTTCCAGGGAGGGAAGAAGCATTTGCTGAAGAACATAAG GAGGAGAAGCAAGTACAACAAGCTGCACCAGCAGGGGACAGGGTTCAATTTGATGAAGCCTGGGTTGGAGGATGAGGTGG AGAAGCTGAGGAAGGACCAGAATATATTGAAAGTGGAGATTCTGAAGCTCAGGCAGCAGCAGGAGAATTCACACGTTCAG CTCACCAATGTTCAGGAGCGGATTCGGCGCACGGAGTTGAAGCAGTGCCAGATGATTTTCTTCCTCACAAGATTGGCAAG AAGGCCAATGTTTGTTGAGCAGTTGATCCAAAGGGTCAAGCGGAAAAGAGACATTGAAGGCACTGACATGGGTAAGAGAC CAAGATTGCTTGGAACTCAGTGCCCTGTTACAATTCCTAATGTTGATTATAGACACCAAGGTTGTGATCAATTTGCTACA CTACAATCTGAGCTGAATGGGCTCTTGTCTGAAAATGTTGATGCTAGCAGGATGCAGCCACCAGGTCCCTCTTCCCTTGA TGATGAATTGTGCAGCTCAGTGCAGGGTTTAAGGGCATGTGGTTCTAGAGCACAGGATGTGTCTTCTGCTTATCATGTGA TGTCAGAAAAACTGTTGGGGGAGAATTCTATTGTTGAAGAGGAACTTGATGTGAATGACTCCAATATTTATCTTGAGTTG GAGGATTTGATAAGCAAGCCAGCAGATTGGGTTGGATCAGCAAGTGGGTTGATGGGGCAAACTAGTTGAATCCTGAATGA ATATCATCCATGCCTTGAGTCATGGTAAAGTTTCTCTCCTACTTTGTAAATTTTGTGCATTTCAATAATATGCCTCAGAT TGTTTCATTTGACATTGGGTGCAGTGTGTGTTCATTTGCAGATTGCAAGAGCATGTCTATGCTGATTCATACTCTGCTGC AACAAGATGAAGAGCAAGATATTATAAGGCTCTTAAAGTACCAGCTCCAAAAGTACAGGACCAGATGCTCGCATCAGTTT TATATGTTCAAGCAAGAACTTTTTGTTTCTGTTGGGCTGGGTCCAAACTGTGGATATGTTGTCTAGCTCTAGCTCCTTTG TGTTTATATTTTGATCTTGAAACTTTCGTTTTCCTTGCTCGTTTCTTATATACCACCATGTACATAGCTAAGCATCTTAA AAAGCAGTAGTTACTATGTAATTTGTAATCTGAAAAATACTTACAGTTCCTTACTTTTCCGTTGTGTTCTAATATTTTAG AGTCTTAGATTTTACCAAACTAATGTATTTTGGTATGTCACCGACATTGCTATAATACTATCGATCAATTTCAGAATTTT CACACTTTTCCTCCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAATTCTAACCTTGTGCCAGAACCTACGGACC AAGGGATAGTCTC
CDS sequence (LotjaGi4g1v0310700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCAGAAGGAGCAGCGAGAGTCAAAGCAGAGTTACTGGACGACACCAGTTCCGGCCTCTCCGACGACGGTTTCAG CGAAATCAAAGAGCTAGACGCCGTTCACATCAAACAAGAGCTTCCTGACGCCGCCGCCGCCTTGCCGAAACCAATGGAAG GGTTGCACGAGGTGGGCCCACCGCCCTTCCTCAAGAAAACATACGAAATGGTGGATGACCCGGACTCCGACCCGATTGTG TCATGGAGCCCCGCCCGTGACAGCTTCATCGTCTGGGACTCTCACGAATTCTCCAAAATCATTCTCCCTAAATACTTCAA ACACAGCAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAGGTTGATTCAGACCGTTGGGAGTTTG CAAATGAAGGGTTCCAGGGAGGGAAGAAGCATTTGCTGAAGAACATAAGGAGGAGAAGCAAGTACAACAAGCTGCACCAG CAGGGGACAGGGTTCAATTTGATGAAGCCTGGGTTGGAGGATGAGGTGGAGAAGCTGAGGAAGGACCAGAATATATTGAA AGTGGAGATTCTGAAGCTCAGGCAGCAGCAGGAGAATTCACACGTTCAGCTCACCAATGTTCAGGAGCGGATTCGGCGCA CGGAGTTGAAGCAGTGCCAGATGATTTTCTTCCTCACAAGATTGGCAAGAAGGCCAATGTTTGTTGAGCAGTTGATCCAA AGGGTCAAGCGGAAAAGAGACATTGAAGGCACTGACATGGGTAAGAGACCAAGATTGCTTGGAACTCAGTGCCCTGTTAC AATTCCTAATGTTGATTATAGACACCAAGGTTGTGATCAATTTGCTACACTACAATCTGAGCTGAATGGGCTCTTGTCTG AAAATGTTGATGCTAGCAGGATGCAGCCACCAGGTCCCTCTTCCCTTGATGATGAATTGTGCAGCTCAGTGCAGGGTTTA AGGGCATGTGGTTCTAGAGCACAGGATGTGTCTTCTGCTTATCATGTGATGTCAGAAAAACTGTTGGGGGAGAATTCTAT TGTTGAAGAGGAACTTGATGTGAATGACTCCAATATTTATCTTGAGTTGGAGGATTTGATAAGCAAGCCAGCAGATTGGG TTGGATCAGCAAGTGGGTTGATGGGGCAAACTAGTTGA
Protein sequence (LotjaGi4g1v0310700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAEGAARVKAELLDDTSSGLSDDGFSEIKELDAVHIKQELPDAAAALPKPMEGLHEVGPPPFLKKTYEMVDDPDSDPIV SWSPARDSFIVWDSHEFSKIILPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHQ QGTGFNLMKPGLEDEVEKLRKDQNILKVEILKLRQQQENSHVQLTNVQERIRRTELKQCQMIFFLTRLARRPMFVEQLIQ RVKRKRDIEGTDMGKRPRLLGTQCPVTIPNVDYRHQGCDQFATLQSELNGLLSENVDASRMQPPGPSSLDDELCSSVQGL RACGSRAQDVSSAYHVMSEKLLGENSIVEEELDVNDSNIYLELEDLISKPADWVGSASGLMGQTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 44 | 366 | 323 | 1.5E-117 | – | |
| PANTHER | 44 | 366 | 323 | 1.5E-117 | ||
| Gene3D | 56 | 153 | 98 | 6.1E-38 | ||
| SUPERFAMILY | 59 | 152 | 94 | 1.5E-34 | ||
| SMART | 59 | 152 | 94 | 4.5E-58 | ||
| Pfam | 63 | 152 | 90 | 1.5E-30 | ||
| PRINTS | 63 | 86 | 24 | 3.2E-19 | ||
| PRINTS | 101 | 113 | 13 | 3.2E-19 | ||
| ProSitePatterns | 102 | 126 | 25 | - | ||
| PRINTS | 114 | 126 | 13 | 3.2E-19 | ||
| Coils | 176 | 196 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0310700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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