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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0312000 |
| Transcript ID | LotjaGi4g1v0312000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | wall-associated receptor kinase-like protein; TAIR: AT3G17350.1 wall-associated receptor kinase carboxy-terminal protein; Swiss-Prot: sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5; TrEMBL-Plants: tr|I1MRW3|I1MRW3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0312000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68852865..68854588) extracted from Lotus japonicus Gifu genome v1.2.
AGACTGGCAAGCAAAACCAGTTCACTTTTGTTCAATTTTTCAACATGTGGTGGATCCCATCACCAGCCTGTGCTCAACGT TCAAAAAGCTTTTCAAACCATGCGAGCAAATCACGGGCATTCCAATCCTCTTTCTAGTAAAATCAGCATCTCCAAGTCAC TCCAGTTAACACTTGTTGAATTAAGTGATACATGTTTGATTCTGTTAAAACAATTTATGAGTTTGAGTTTTATAGATAGA AAAAAAATCTTACTAAACGAGTTAACTCTACCATGACGTGAATGTTTCGTACTCGAATTGCAGAACACCTGTATTAAGAA AATGACACTCCCTTTTTACCTTGCTCCAAAATTCCACTCTGTAGTTTGCTTTCCCTGCTAGTTCTAGTTTGTGAGCATGT TGCAGATGCAGCTTCCCCTGCTACCACCATTCACCATTTTCAAACTTGTCATTACACTAACATTACTTCTACAAGCCATT CCCACTCTCACACTCTCCCCATGCAAAAACTCATGTGGAACCATTCCCATAAACTACCCATTTGGCCTAGAAGATGGGTG TGGAGCACCCCAGTTCAGACACATGCTAAACTGTAACACCACTGAGCTATTTTTCGAAACACCTTCAGGATCCTACAAAG TTCAATCCATCAACTACGAAAAATCCTCCATGGTAATCTACGACCCATCAATGTCCACCTGCTCCATTCTCCAACCCCAC CATGATTTCCTCATGACTGACATCCAATCCGCCATCATCCCTCCATCACAGGACACAGTCTTCGTCCTGCTAAATTGTTC CATAGACTCCCCTGTTCTCAACCATTACAAGTACCTCTGCTTCGACTTCGCCGGCCACACCTGCGACGAGCTTTACGGGT CATGCAACGCTTTCAGAGTCTTCCATTTGCTGACAAATAGTTCACCACCGTGCTGTTTCACGAGCTACAACACGGTGAAG TTCATGAGCATGAACATTTTGGACTGTACACACTATACCAGTGTGTTTAACAGTGATGGTTTGAAGGGTGTTGGGCCTTT GGATTGGGTTTATGGGATTAAGCTTTCTTTCAGTGTGCCGGAAACTGGGTGTGGGAATTGCAGGAAATCTGGTGGGACTT GTGGGTTTGATACTGATACAGAAGGGTTGCTATGCCTTTGCTCAGGTTTCAGCAATGCAACAAGGGAATGTGGTGAGAAA CTCTGTCTCATGTTTTAATCTCCTCTTGTGATTTTAATTAAATGGTTGGTGTGCTAGTTTTTGAACTTGGGTGTTTGTGT TTTGTGGCTCAGGTATTGGAAGTGGAATATCAGGAGAGCTGAGCAATGCTCCTTGGAGAAATTACCTATTTGTTCTGCAT CTAGCGGTTTTTCTTCACACTATAATGAGGCTCTCCTTTGAGAGTTTTCAAGTTTAATTGAGTTCCACTCTTTCTGGTAG TGGGTAGAGAGGGTTTGTGTAGTTGTGTATTTGACATTTGTGATATGCTTCTTTGAGATTTAGGAGTTAGAAGTTCTTGT CTACTCTAGTAATGCAAAAATGGCTTGCCAAAGGAGAAAAGACACTTTGTGATCATTATTTTACATACTCACAATGGGCA TGACAAATGGGCAAATCTTCTTACTTCTTACTGCTTCAACTACATTTTTTTGTGCTCCATGTCTTTTATGGTGCTCCACT TCAACTGCATGTTAGCTTTGACAAAAAAATAATATTAGTTTTGC
CDS sequence (LotjaGi4g1v0312000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCAGATGCAGCTTCCCCTGCTACCACCATTCACCATTTTCAAACTTGTCATTACACTAACATTACTTCTACAAGC CATTCCCACTCTCACACTCTCCCCATGCAAAAACTCATGTGGAACCATTCCCATAAACTACCCATTTGGCCTAGAAGATG GGTGTGGAGCACCCCAGTTCAGACACATGCTAAACTGTAACACCACTGAGCTATTTTTCGAAACACCTTCAGGATCCTAC AAAGTTCAATCCATCAACTACGAAAAATCCTCCATGGTAATCTACGACCCATCAATGTCCACCTGCTCCATTCTCCAACC CCACCATGATTTCCTCATGACTGACATCCAATCCGCCATCATCCCTCCATCACAGGACACAGTCTTCGTCCTGCTAAATT GTTCCATAGACTCCCCTGTTCTCAACCATTACAAGTACCTCTGCTTCGACTTCGCCGGCCACACCTGCGACGAGCTTTAC GGGTCATGCAACGCTTTCAGAGTCTTCCATTTGCTGACAAATAGTTCACCACCGTGCTGTTTCACGAGCTACAACACGGT GAAGTTCATGAGCATGAACATTTTGGACTGTACACACTATACCAGTGTGTTTAACAGTGATGGTTTGAAGGGTGTTGGGC CTTTGGATTGGGTTTATGGGATTAAGCTTTCTTTCAGTGTGCCGGAAACTGGGTGTGGGAATTGCAGGAAATCTGGTGGG ACTTGTGGGTTTGATACTGATACAGAAGGGTTGCTATGCCTTTGCTCAGGTTTCAGCAATGCAACAAGGGAATGTGGTAT TGGAAGTGGAATATCAGGAGAGCTGAGCAATGCTCCTTGGAGAAATTACCTATTTGTTCTGCATCTAGCGGTTTTTCTTC ACACTATAATGAGGCTCTCCTTTGAGAGTTTTCAAGTTTAA
Protein sequence (LotjaGi4g1v0312000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQMQLPLLPPFTIFKLVITLTLLLQAIPTLTLSPCKNSCGTIPINYPFGLEDGCGAPQFRHMLNCNTTELFFETPSGSY KVQSINYEKSSMVIYDPSMSTCSILQPHHDFLMTDIQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFDFAGHTCDELY GSCNAFRVFHLLTNSSPPCCFTSYNTVKFMSMNILDCTHYTSVFNSDGLKGVGPLDWVYGIKLSFSVPETGCGNCRKSGG TCGFDTDTEGLLCLCSGFSNATRECGIGSGISGELSNAPWRNYLFVLHLAVFLHTIMRLSFESFQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 32 | 32 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| PANTHER | 13 | 295 | 283 | 1.0E-152 | – | |
| PANTHER | 13 | 295 | 283 | 1.0E-152 | – | |
| Phobius | 17 | 28 | 12 | - | – | |
| Phobius | 29 | 32 | 4 | - | – | |
| Phobius | 33 | 282 | 250 | - | – | |
| Pfam | 35 | 135 | 101 | 4.7E-19 | ||
| Pfam | 220 | 256 | 37 | 7.7E-6 | ||
| Phobius | 283 | 301 | 19 | - | – | |
| Phobius | 302 | 306 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polysaccharide binding | Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. |
Expression pattern of LotjaGi4g1v0312000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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