Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0313700 |
| Transcript ID | LotjaGi4g1v0313700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RELA/SPOT homolog 3; TAIR: AT3G17470.2 Ca2+-activated RelA/spot-like protein; Swiss-Prot: sp|Q84R11|CRSH_ARATH Probable GTP diphosphokinase CRSH, chloroplastic; TrEMBL-Plants: tr|G7JR05|G7JR05_MEDTR Ca2+-activated RelA/SpoT-like protein; Found in the gene: LotjaGi4g1v0313700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69047969..69051415) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGAAAGAAACCGAAGCATCATCCTCTACTCTACTCTTCTCTGCTTGCACCCAACAACCAAACAAAAATGGAGCTCTC GCAGTTAAACCTCCACGCTCACGATTTCCCCACCACACACTATTCTCTCCCCAAAACCCCCACCACTTCTCCATTCATTC TCATACCACTCTTCATCCTCCGTCACCACCGCCGCCGCCGCACGCGTCTCCGATGGTCAGCTCCGAGGGCGTGCGCGGCG GCGGAGGTCACCGGCGGAGGGAAGATGGTGATGGAGTTGGTCGGAGCCTTCAACGAACTCACCGAGAGGATGAAGGTGCT GTCGACGAGCTCCTCCGGCCTTCTCTTCAAGTCCCTCAAGCTCTCCATCCCTGTTCTTCAAACCTCCCCTGTCTCCGCCG ATGGCCGCTCTCCCCTTTCCAAAGCACTGTCCCTCGCCATGATCCTCGCTGATCTCCAGGTACATAACATAACATAACTA CACTGCTTACTTTGGAGAATCAGAAATCAAATATATACAGTTATGCAAACAGAAAATCATGTTACAGACAGACTTGTTAA TAGCGCGCTATAGCGACGCGATAGCGCTATAACGTAGCGCCCTGGGGGTTCACCGCTACTCCAATATTTGACGCTATTGT CCGCTATTTGCCGCAATAGCGCTCGAAATAACGTTTTTTGGGCTTGTTGCTACGCTAGGCTATCCACCATTAAGAACCCT GGTTACAGATCTAACGGAAAATAACTAACTGAGAATGCGATTTGGGAAACAGTTTAGTTTAATTAAGTGCTTATGACAAA TTAACAAACACTTATCATGTAAGGTTTATTCATAAACTTGTTAGAGAAATTTAATGAAATAAGCTCAAAATAGCTTATAA GAATGTATATCTGGGATGCATTTAGGTAGATAGCTTAATTAAGCGCATAAGCACTGATTGTCATAAGCTAATTTGAGAAA CTTATTGAAATAAGTTGAAAATAGATTATAGATAAGCATAAGTTTGTATTCATAAGTTAATCTAAACAACTTATGAAAAT AAGTTCAAAACAACTTATAGATAGGCGATAAGGTATTTGCATAACACTTGCATAATTAGTTTAGTTAGGTGTAATCATCA CAGTTAATAATACTATTGATTTTAAATATTTGCATCTCTAGCTATCTAGGCTGTGTTTGGACATCTATTTGCAATCTGTT TTTGACACACACTTCAAGACCAAAAGGTAAAAGGAACATTTCTTAGGGATTGAGTTGAATGTCCATTCACTTTGCGCTCA ACTGTTATCCACACACATATTTGTTAGCTGGATTAGATTAGTTACATGATGTCATTGCTGTTTATTTTTTGTTTATAGTA AGTATGATTGCAGATGGATGCTGAAGTTATATCGGCTGGAATATTGAGAGAGGTGTTGGAGGTAGGTGCATTGAGTATCA ATGAAATTCAGAGCGAGATAGGTGCTGCCACTGCTCATTTGGTGTACGAGAGTTTGCGTGTGAAGAACATCCCGTCCAGG ATTGATGTTCTGGATGATGACAATGCTGCTGCGCTGAGGAAGTTCTGCCTCACTTATTATGACATCAGGGCTTTGATCTT GGACCTGGCCTTGAAGCTTGACATGATGAGACATATTGCTTATCTCCCTAGGTACCAGCAGCAGATCCTTTCCCTACAAG TGATGAAAATTCATGCCCCCCTTGCTCATGCTCTGGGGACTACCTACTTGTCACTGGAGTTGGAAGATCTGTCCTTTCAG TATTTGTTTCCTTACTCATACCTTTATGTTGATACGTGGTTGACGAGTCATGAGACTGGGGATAAACCTCTTATTGATGT GTACAAGGAAGAACTGCTCCAGACACTAGAAGCTGACCCATTGATTGCGGAACTTGTGGATGATATCTCAATTAAAGGTC GCTATAAGAGTCGTTACAGCACGATGAAGAAGCTCTTGAAGGATGGTAGGAGGCCAGAAGATGTGAATGATGTGCTTGGG CTGCGAGTCGTGTTGAATCCTAAACCTGGTGATGGTGCATTGGAAGCTGGAGAGAGAGCTTGCTATAGGGCTCATGAGAT CATTCAGTCCATGTGGAAAGAAATCCCTTACAGGACAAAAGATTATATTGCCAGGCCAAAAGCAAATGGGTATAGAAGTT TGCATATGGCAGTGGATGTGAGTGACAATTGTAGGACAAGACCATTGATGGAAATACAGATAAGAACAACAGAAATGGAC AGGTTAGCTGTTGGTGGAACAGCTTCACACTCATTATATAAGGCTGGTCTTACTGATCCACAAGAGGTCAGTTCTTCTTT TTAAAATGAAAATTTAAATATACACACAAATAATTGATCCCTTTAGCAAAATGTTGAAAGAAGATTTAGTTTTTAGTTAC TGTGAGAAAAACTTATCTTGAATTTATGTCCCATTGAGTCCAAAGGGAAGACAAAGTAGCAAACTGGCATTTATTTTTTA GTTGTTGATGCTCAGGCAAAGCGTCTGAAGACAATCATGCTGGCTGCAGCTGAGCTTGCTGCTCTGCGCCTTAGAGATCT TCCAGGCGCAATTCATAAAGGGATCGAGATTGACCAGAGGGATAGAGTGTTTCGCCTTCTTGACAAGAATGGAGATGGTA AAATTAGCATTGAGGAACTTGCAGAGGTGATGGAGGAGCTTGGTGCACCAGGAGAAGATGCCAAAGACATGATGCAGCTC CTTGACTCGAATAGTGATGGCTCTCTGAGTTCTGATGAATTTCATATGTTCCAAAACCAGGTGATTGATAATTTTGTCAC TTAACGTTTGATTTGATTTTTTTATGTGCACTTTCATGCCTTTTTCTGAATTTTCATTTCTTTCTTATTACAATGAATGC TAGCTAAATCTCCTGTCTCATCAATTTTAGCTTCACTGGTATTTGATTTTGTAGATTGAGTTGGTGCACAATTTAGAGGA CCGAGATGATCAGTACAAGAAAATGTTGGATGAGAAGCTTCATATGGCAGATGACAGTGGATTAATTCAGGTATATAATA AGGAGTTCGGCAACAGGCTTGTAAGCTAGTGTGTAAGTGATGTATGTATTTTCCATGTAAATTAATTGATTGCATAGTGA AGTTCCAGTGATTAAGAAATTGTTTCAAAATCATGCTTACTCTGACCTATTGTTTTATAATTCAATGTTATCTTCATAGT CCAAATGATAGGAATGATTGCAAATTGATGCAATCAAATGGATGCAATCACTAGGCCGTAGTTATTAAACACAACCCAGA CTCAAATGAGGTATAAAAACAAGGCTTAATTACTGTTCCGGTACCGTTAACACACGCCAGTGAGGCCATTATCGGGTACC AATTATCATCACTACACCTGTCACTGTCAAGTATTAATACCTCTTGGCATCGGCTTCCATGCATACCAGAGCTGATGGAC TATTGTT
CDS sequence (LotjaGi4g1v0313700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTCTCGCAGTTAAACCTCCACGCTCACGATTTCCCCACCACACACTATTCTCTCCCCAAAACCCCCACCACTTC TCCATTCATTCTCATACCACTCTTCATCCTCCGTCACCACCGCCGCCGCCGCACGCGTCTCCGATGGTCAGCTCCGAGGG CGTGCGCGGCGGCGGAGGTCACCGGCGGAGGGAAGATGGTGATGGAGTTGGTCGGAGCCTTCAACGAACTCACCGAGAGG ATGAAGGTGCTGTCGACGAGCTCCTCCGGCCTTCTCTTCAAGTCCCTCAAGCTCTCCATCCCTGTTCTTCAAACCTCCCC TGTCTCCGCCGATGGCCGCTCTCCCCTTTCCAAAGCACTGTCCCTCGCCATGATCCTCGCTGATCTCCAGATGGATGCTG AAGTTATATCGGCTGGAATATTGAGAGAGGTGTTGGAGGTAGGTGCATTGAGTATCAATGAAATTCAGAGCGAGATAGGT GCTGCCACTGCTCATTTGGTGTACGAGAGTTTGCGTGTGAAGAACATCCCGTCCAGGATTGATGTTCTGGATGATGACAA TGCTGCTGCGCTGAGGAAGTTCTGCCTCACTTATTATGACATCAGGGCTTTGATCTTGGACCTGGCCTTGAAGCTTGACA TGATGAGACATATTGCTTATCTCCCTAGGTACCAGCAGCAGATCCTTTCCCTACAAGTGATGAAAATTCATGCCCCCCTT GCTCATGCTCTGGGGACTACCTACTTGTCACTGGAGTTGGAAGATCTGTCCTTTCAGTATTTGTTTCCTTACTCATACCT TTATGTTGATACGTGGTTGACGAGTCATGAGACTGGGGATAAACCTCTTATTGATGTGTACAAGGAAGAACTGCTCCAGA CACTAGAAGCTGACCCATTGATTGCGGAACTTGTGGATGATATCTCAATTAAAGGTCGCTATAAGAGTCGTTACAGCACG ATGAAGAAGCTCTTGAAGGATGGTAGGAGGCCAGAAGATGTGAATGATGTGCTTGGGCTGCGAGTCGTGTTGAATCCTAA ACCTGGTGATGGTGCATTGGAAGCTGGAGAGAGAGCTTGCTATAGGGCTCATGAGATCATTCAGTCCATGTGGAAAGAAA TCCCTTACAGGACAAAAGATTATATTGCCAGGCCAAAAGCAAATGGGTATAGAAGTTTGCATATGGCAGTGGATGTGAGT GACAATTGTAGGACAAGACCATTGATGGAAATACAGATAAGAACAACAGAAATGGACAGGTTAGCTGTTGGTGGAACAGC TTCACACTCATTATATAAGGCTGGTCTTACTGATCCACAAGAGGCAAAGCGTCTGAAGACAATCATGCTGGCTGCAGCTG AGCTTGCTGCTCTGCGCCTTAGAGATCTTCCAGGCGCAATTCATAAAGGGATCGAGATTGACCAGAGGGATAGAGTGTTT CGCCTTCTTGACAAGAATGGAGATGGTAAAATTAGCATTGAGGAACTTGCAGAGGTGATGGAGGAGCTTGGTGCACCAGG AGAAGATGCCAAAGACATGATGCAGCTCCTTGACTCGAATAGTGATGGCTCTCTGAGTTCTGATGAATTTCATATGTTCC AAAACCAGATTGAGTTGGTGCACAATTTAGAGGACCGAGATGATCAGTACAAGAAAATGTTGGATGAGAAGCTTCATATG GCAGATGACAGTGGATTAATTCAGGTATATAATAAGGAGTTCGGCAACAGGCTTGTAAGCTAG
Protein sequence (LotjaGi4g1v0313700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELSQLNLHAHDFPTTHYSLPKTPTTSPFILIPLFILRHHRRRRTRLRWSAPRACAAAEVTGGGKMVMELVGAFNELTER MKVLSTSSSGLLFKSLKLSIPVLQTSPVSADGRSPLSKALSLAMILADLQMDAEVISAGILREVLEVGALSINEIQSEIG AATAHLVYESLRVKNIPSRIDVLDDDNAAALRKFCLTYYDIRALILDLALKLDMMRHIAYLPRYQQQILSLQVMKIHAPL AHALGTTYLSLELEDLSFQYLFPYSYLYVDTWLTSHETGDKPLIDVYKEELLQTLEADPLIAELVDDISIKGRYKSRYST MKKLLKDGRRPEDVNDVLGLRVVLNPKPGDGALEAGERACYRAHEIIQSMWKEIPYRTKDYIARPKANGYRSLHMAVDVS DNCRTRPLMEIQIRTTEMDRLAVGGTASHSLYKAGLTDPQEAKRLKTIMLAAAELAALRLRDLPGAIHKGIEIDQRDRVF RLLDKNGDGKISIEELAEVMEELGAPGEDAKDMMQLLDSNSDGSLSSDEFHMFQNQIELVHNLEDRDDQYKKMLDEKLHM ADDSGLIQVYNKEFGNRLVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 45 | 563 | 519 | 5.8E-265 | – | |
| PANTHER | 45 | 563 | 519 | 5.8E-265 | – | |
| Gene3D | 76 | 261 | 186 | 9.3E-28 | – | |
| SUPERFAMILY | 81 | 261 | 181 | 5.34E-32 | – | |
| Pfam | 106 | 246 | 141 | 8.1E-21 | – | |
| ProSiteProfiles | 115 | 215 | 101 | 18.784 | ||
| SUPERFAMILY | 263 | 455 | 193 | 4.25E-39 | ||
| Gene3D | 265 | 416 | 152 | 1.2E-32 | ||
| CDD | 287 | 422 | 136 | 1.1583E-32 | ||
| SMART | 312 | 436 | 125 | 4.5E-40 | ||
| Pfam | 312 | 434 | 123 | 8.2E-29 | ||
| Gene3D | 417 | 557 | 141 | 1.1E-16 | – | |
| SUPERFAMILY | 470 | 536 | 67 | 1.66E-16 | ||
| ProSiteProfiles | 471 | 506 | 36 | 15.685 | ||
| SMART | 475 | 503 | 29 | 7.5E-5 | ||
| CDD | 478 | 533 | 56 | 2.52637E-13 | ||
| Pfam | 478 | 531 | 54 | 9.5E-10 | ||
| ProSitePatterns | 484 | 496 | 13 | - | ||
| ProSiteProfiles | 508 | 540 | 33 | 8.767 | ||
| SMART | 509 | 537 | 29 | 0.64 | ||
| ProSitePatterns | 518 | 530 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Guanosine tetraphosphate metabolic process | The chemical reactions and pathways involving guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates. |
Expression pattern of LotjaGi4g1v0313700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…