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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0314200 |
| Transcript ID | LotjaGi4g1v0314200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA pseudouridine synthase A; TAIR: AT3G06950.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q6MEE7|TRUA1_PARUW tRNA pseudouridine synthase A 1; TrEMBL-Plants: tr|V7CC41|V7CC41_PHAVU tRNA pseudouridine synthase; Found in the gene: LotjaGi4g1v0314200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69080373..69083497) extracted from Lotus japonicus Gifu genome v1.2.
GACTAATTGTGATTTTGTATTTTCAACCAAGTAAATAATTTGTATTTCAGTAAAAGAAAAAAAAAAACATATTCTTATTA TTATCTGGTGTTATTGGCAATGTAATGGATTGAAGAAGAAGAAGAAGAAGGTGCAGCTTCTTCTTACGATGAGTTGCGCA GTAGCAACTCTTGTTGTTCCATCTTCACCTCCAAGTTCCCTTCTATCTGTATGAACCTCTCTAATCTCTCTTCTCTATGT CTTCTTCCTTTTGTTCATAACAGTTTCTTTTGTTTTTTTTTGGTGTGGATTTCAGTTGAATTCTGCTGATTTTGTGGAAG TGGAAAATGGGGTGAAGCCCATTCAAGATGTGTATAAATGGCGTCTGGTTTTGGCTTATGAGGGTACCCGATACGCAGGT TTGCTTCTCTTTTCGTTTTCACATTCTGGGCATTCCATTTCATCTATAAAGCTGTTAAATTTTTCAAACATTTTGACATG GGTCATTATCTGTTTCTGGGTCTTGTCTTTGTTGTGTGTGTGTTTCTGAGTGTTTCATTTTTTTCTTTCTCTTCAGTGTC TGTGTCTATTGTACTAATCACAATATCAGTGAGACTGCTTTTGTTAATATAGGCTCTAAGTGCTGGAGAATGATCATTTG CATGACTATGTATTGCATATATTCTGTTTTTATTTTATTTGTATAATCTCAAACAGTGATTATGTATCATCAGGTGTTGA ATTTATAAATTTCAGGTTTGTATCTGTTGGGTTGACTTGGCTTTATCTTATTATTTAAATGGTTTATAGTATGTTTGGTT CCATGGAGAAATGCTATATAATCAATCACTTTTGGTTAGAAGCTACAAGTCTTAGGGGCATGTTTGGTTCGCCGTAGGGA AACTTCAGAGTGTGTTTGGATTTACAACACGTATATAATTCAAAGCACGTGAAGTGTAAAAGCTATCTATTGTAGCTTCT GTTTTAAGTAAATTATATGTGATGTTGATGTGAATCCAAACATACTAAGAATCAATTCTCATTGGGCAACATCACTTTTG ATTATTACATAGATATTTGGGAATTGTCTCGGAGAATGATTTTAGTCACAAAATCAATTTTCTGTAGAAGCTAGGGAGGG TAGCTTCTACGGTGAACATAATCAATTGTGAGATTTTACATTTGAGTTTCACAACATTACCCTATAGATATCACTTTTTT CGTAAATTTATCCAAACATAAATCACTTCACTTCCAACTAACTTCAAGTCTTCAACTCACTTTTATCATATTCAGTTCTA CCAAAATCATTTCTATCTAAAATCAATGTTGATAATGAACGCTGATCCAAAACACACTTGACTTTTGAATAAACGTGCTT TCGATTCTGTGCAAATCTTGAAGCCCAACATGCTATGAATCTCTTTGTCGTCAAAATCCATGGTGGGGAAAGGTCAAAGT CCGAAACTATTGAATGAAGTTTCCACCTTAATGTAATGATATTCAGTGTACTTTATAGGTGTACCAAATCTCCTTGGGCT ATTCAAGGTGCAGCTTTCCAGTGGTGTGATAAAAATATAGCTTAAACATTGAAATCTTTCTTTTTCTCCATTACTTTGAA TGGTTATTTATACTTCAGGGTGGCAATATCAGATGTCTCCCCCAACTGTACAATGCGTTGTGGAAAGAGCTTTAACTCGA GCAACAAAGCTTCAAAGGAAGGATCTCTGTTTGGTTGGTGCAAGCAGGACTGATGCTGGAGTCCATGCCTGGGGTCAGGT CAGACATTTGGGATGTTTGAATCAACTTATTTTTGTCTCATAATCAATTTTGGCAGTCAGAAGCTACTCATAGAAGCTTC TTCACATCATCGATTTTGGCTTTAGAATCAATTGTAAAAGGATTTCCAAACATGCTAATTGTTCCTTGTGTGGGGTTCCA AGTTTCAAGTGGCAACCATGGGTAATTCATTACTTACTGTGACTGCAGGTTGCACATTTTGTTACTCCATTTAACTATGA CAAGTTAGAAGATATTCATGCAGCTTTGAATGGTCTTCTTCCTTCCGATATCCGAGTCAGAGAAATCAGCCCTGTTCCAG AAGAATTCCATGCTCGGTTTTCGGCCAAAAGTAAGATTTACCATTACAAGATATACAATGATACCATCATGGACCCATTC CAGCGCCATTTTGCTTACCATAGTCCGTATAAACTCAATAGTGCTGTTATGAGAGAAGCTGCACAATATTATGTTGGGAA GCATAATTTCTCTGCTTTTGCAAACGCATCCCACAATGATGGGGTACCGGATCCAGTGAAGCATATTTTCCGATTTGATG TGAAAGAAATGGTACTTAACTGGTTCTTTCTTAGACAAGCTTTTTTAGCTTTTTTCCACTAGTATTACTCCTCATTTTAG CAATTTGCACTATATTTACCCTGTTAAAGCCAAGTACTTCAATATCCATGTGCAGGGAGCTCTTTTGCAGCTAGAAGTTG AAGGTTCAGGTTTCTTATATCGACAAGTCCGAAACATGGTAGATAGTTATGCTTGTCCCTAATTCGGTTAAAATATTATT CTGCAATTGCAAAATTACTGTATTGTTAAACCACTATTATGATGGCCAAGACATGTACCTGTTTGCTTTTCCAGGCGGCT TTGTTGGTTCAAATTGGCAAGGAAGCTCTCCCTCCTGATATTATTCAACATATTTTGGCGAGTCGTGATCGCAAGGAACT TGCAAAATACGCCTTGTTTGCTCCACCTCATGGCCTTTGTCTTGTTTCTATCAACTATAATGAAAGTCACCTATTGCCTC CACCAGGTTGCCCAGCAAACAGTTTTGGTAGGCATCATACAATAAGAAAGTGCAAGGTTCCATTCTATTGATAATGCTAG GCAACAGAACAAAGGTCTAAATATCTTAGGACTGATTTTTTTGACATTTTTATTTAATTTTTGTGCTTCATGATTCTTAA TCTGTAAATTGATGGAGCCTAAAATAGTGATTTAGCTTGTAGAGTTGTTTCAAAGATGAAATTGTGTTGAAGTTCTCTCT GTTTAATCCAAAAAAGCAGTTTGATGATGACTACTTTTCACAAGCACCAACTGTTTTCTAATAGAAAGTTCATATTAGGA TTTAG
CDS sequence (LotjaGi4g1v0314200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTGCGCAGTAGCAACTCTTGTTGTTCCATCTTCACCTCCAAGTTCCCTTCTATCTTTGAATTCTGCTGATTTTGT GGAAGTGGAAAATGGGGTGAAGCCCATTCAAGATGTGTATAAATGGCGTCTGGTTTTGGCTTATGAGGGTACCCGATACG CAGGGTGGCAATATCAGATGTCTCCCCCAACTGTACAATGCGTTGTGGAAAGAGCTTTAACTCGAGCAACAAAGCTTCAA AGGAAGGATCTCTGTTTGGTTGGTGCAAGCAGGACTGATGCTGGAGTCCATGCCTGGGGTCAGGTTGCACATTTTGTTAC TCCATTTAACTATGACAAGTTAGAAGATATTCATGCAGCTTTGAATGGTCTTCTTCCTTCCGATATCCGAGTCAGAGAAA TCAGCCCTGTTCCAGAAGAATTCCATGCTCGGTTTTCGGCCAAAAGTAAGATTTACCATTACAAGATATACAATGATACC ATCATGGACCCATTCCAGCGCCATTTTGCTTACCATAGTCCGTATAAACTCAATAGTGCTGTTATGAGAGAAGCTGCACA ATATTATGTTGGGAAGCATAATTTCTCTGCTTTTGCAAACGCATCCCACAATGATGGGGTACCGGATCCAGTGAAGCATA TTTTCCGATTTGATGTGAAAGAAATGGGAGCTCTTTTGCAGCTAGAAGTTGAAGGTTCAGGTTTCTTATATCGACAAGTC CGAAACATGGCGGCTTTGTTGGTTCAAATTGGCAAGGAAGCTCTCCCTCCTGATATTATTCAACATATTTTGGCGAGTCG TGATCGCAAGGAACTTGCAAAATACGCCTTGTTTGCTCCACCTCATGGCCTTTGTCTTGTTTCTATCAACTATAATGAAA GTCACCTATTGCCTCCACCAGGTTGCCCAGCAAACAGTTTTGGTAGGCATCATACAATAAGAAAGTGCAAGGTTCCATTC TATTGA
Protein sequence (LotjaGi4g1v0314200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSCAVATLVVPSSPPSSLLSLNSADFVEVENGVKPIQDVYKWRLVLAYEGTRYAGWQYQMSPPTVQCVVERALTRATKLQ RKDLCLVGASRTDAGVHAWGQVAHFVTPFNYDKLEDIHAALNGLLPSDIRVREISPVPEEFHARFSAKSKIYHYKIYNDT IMDPFQRHFAYHSPYKLNSAVMREAAQYYVGKHNFSAFANASHNDGVPDPVKHIFRFDVKEMGALLQLEVEGSGFLYRQV RNMAALLVQIGKEALPPDIIQHILASRDRKELAKYALFAPPHGLCLVSINYNESHLLPPPGCPANSFGRHHTIRKCKVPF Y
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| Phobius | 3 | 10 | 8 | - | – | |
| Phobius | 11 | 20 | 10 | - | – | |
| Phobius | 21 | 321 | 301 | - | – | |
| PANTHER | 37 | 300 | 264 | 5.2E-111 | – | |
| PANTHER | 37 | 300 | 264 | 5.2E-111 | ||
| Gene3D | 37 | 147 | 111 | 3.3E-33 | – | |
| SUPERFAMILY | 39 | 297 | 259 | 7.05E-77 | ||
| Hamap | 40 | 291 | 252 | 32.062 | ||
| TIGRFAM | 42 | 276 | 235 | 1.8E-59 | ||
| CDD | 44 | 291 | 248 | 1.13527E-107 | – | |
| Pfam | 47 | 145 | 99 | 2.1E-8 | ||
| Gene3D | 149 | 294 | 146 | 2.1E-38 | ||
| Pfam | 185 | 292 | 108 | 5.2E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. |
Expression pattern of LotjaGi4g1v0314200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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