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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0317000 |
| Transcript ID | LotjaGi4g1v0317000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Deaminase-related family protein; TAIR: AT5G28050.3 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|O34598|GUAD_BACSU Guanine deaminase; TrEMBL-Plants: tr|I3SAE1|I3SAE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0317000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69423828..69425762) extracted from Lotus japonicus Gifu genome v1.2.
TTGTTGATTATTTTAGTGGTGGAAACCAAGGATGGAACTGTTTCAGTGGCTACTGCTTTTGCTGGTCACCAGGAAGGTAA TGCTTCTGCACATAATGTTCTGCTTGGTTCTGTTTAGTTATTTCGGAATCTTAATCTTATCATATCATTTCATTTGATAG AAACCTGAATTAATGATTTATATTGGTAAACATTAGGCTTGATAAGCAAACCATAGATCCAACCAATCTTTCAGTAGATG GTTTATATTTGAAATGAAAAAAGTCATATGGAGATTTTGTTGCATGGCCTGCTCGATATTGTACTGGCGTCTTATTACTT TTCTTCTGCTGTTGGTATTGGTTAATTAGCTGTGCAGGATAGAGACCACAAATTTTTAGGAAAAGCGGTTGAAGAAGCAT ACAAAGGGGTAGATTGTGGACATGGAGGCCCTTTTGGTGCTGTAATTGTTCGTAATGACGAAGTAGTTGTTAGTTGTCAC AACATGGTTCTGAATCACACTGACCCTACTGCTCATGCAGAGGTGACAGCAATAAGAGAGGTATAAACCACCAAATGATT TTCTTATAAAGCATGAGAATTGCATTTTTTATTTTTTTAATAGATCTTGATGTTGCATTAGTATTTTGTCTCTAATGTTA GGAACAGGATAACCACAATCCACTTATATTTCAAAGTGATACATGTTGCGATGCTTGGTAACACACTTATACGGAGAAAT CCTGTTTGTAGGGGGGCTATTTTAAGATTTTTTTTTACTAAGAGGTCAATTGATTAAGAATTTACAAACTTGGATTTGAC ATGATTGAAAAGATTCAAAGCATCAACCTAAAGACCCGGCTTCTAAAGATAATTGGGGGAAACTGTTAAGGCTCTCTTTA AGATAATTTTTGTTGAACCCTTCTCTGTCTTCTCTGTTCTCATGAAAAGGTAATGAAAATGATCAATTTGAATTGGACAG TGATGAGGTAAGGGTCTTGGACTTATGCTCGATTCCACCTAGTTTTGATATCTGATACACGTAGAACATGATCCCTATCT CGCCGGCACTATTTTTCTATGGTCTTATGACCACCTGCTGGAAATGCTGTTAATATTTGTTGTTGAGTTTATGAGATAAA GCTGCCAAAAGATGATATGGTTTTAGGTTTTGAGATGATTTTATGTTACACATGATATTAGGCAATGCGTACTTTAGGGT TCTGTTGTGTTGTCTGTTACTTTAACATCTAGATAATGATTGAGATGAAAATGCTGCAGCATTCTAAAGTGCTGAAAAGA TGTATTTGCTTCCAGAATTTACATATTGTTGCCTCACTCTTTAACCAACCGATAAATGACTAGATATCAAATTGACATCA AATACCACTCTATCTAGGTTCTCAAAAGGATAGCTGAGACAGTATAGTTTATAAGCTCTAAAATCCCAACAAAAAATCTA AAGAAACTTATTGTATTACTCTATGTGCCTCTTCTTTAATGCTTTAGGTGTAGCAAACTTTATGCAATGGCAAACCAAAA ATGACCAATGCAGTGCTTTCATTTTTACAGGCCTGTAAGAAGCTTAACCAGATAGAGCTTTCAGATTGTGAAATATATGC TTCTTGTGAACCTTGCCCCATGTGCTTTGGTGCAATCCACCTTTCTCGAATTAAGGTTGGAATGGCCTTCTTTTCTTATA TTTCAGATTTATACCAACTTATATATTGTTTTCAGCATAACTTATTACCACATTCTTTTGAAACAGAGGTTGGTTTATGG AGCGAAGGCTGAGGCAGCAATTGCTATTGGGTTTGATGATTTTATTGCGGATGCATTGCGAGGTACTGGATTCTATCAGA AAGCTCAGTTGGAGATTAAAAGAGCTGATGGTAATGGGGCCCTCATTGCAGAAGAGGTTTTCCAGAAAACAAAGGAAAAG TTCCAAATGTACTAG
CDS sequence (LotjaGi4g1v0317000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTGAATCACACTGACCCTACTGCTCATGCAGAGGTGACAGCAATAAGAGAGGCCTGTAAGAAGCTTAACCAGAT AGAGCTTTCAGATTGTGAAATATATGCTTCTTGTGAACCTTGCCCCATGTGCTTTGGTGCAATCCACCTTTCTCGAATTA AGAGGTTGGTTTATGGAGCGAAGGCTGAGGCAGCAATTGCTATTGGGTTTGATGATTTTATTGCGGATGCATTGCGAGGT ACTGGATTCTATCAGAAAGCTCAGTTGGAGATTAAAAGAGCTGATGGTAATGGGGCCCTCATTGCAGAAGAGGTTTTCCA GAAAACAAAGGAAAAGTTCCAAATGTACTAG
Protein sequence (LotjaGi4g1v0317000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLNHTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRG TGFYQKAQLEIKRADGNGALIAEEVFQKTKEKFQMY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 72 | 72 | 7.27917E-33 | – | |
| Gene3D | 1 | 116 | 116 | 3.3E-32 | – | |
| PANTHER | 1 | 114 | 114 | 4.6E-80 | – | |
| PANTHER | 1 | 114 | 114 | 4.6E-80 | – | |
| ProSiteProfiles | 1 | 73 | 73 | 16.544 | ||
| SUPERFAMILY | 3 | 74 | 72 | 8.5E-27 | ||
| Pfam | 6 | 65 | 60 | 2.3E-17 | ||
| ProSitePatterns | 11 | 48 | 38 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | TRNA wobble adenosine to inosine editing | The process in which an adenosine in position 34 of a tRNA is post-transcriptionally converted to inosine. | ||
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | TRNA-specific adenosine deaminase activity | Catalysis of the reaction: adenosine + H2O = inosine + NH3, in a tRNA molecule. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi4g1v0317000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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