Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0318500 |
| Transcript ID | LotjaGi4g1v0318500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger protein; TAIR: AT5G20885.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48; TrEMBL-Plants: tr|I3TA00|I3TA00_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0318500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69599793..69601218) extracted from Lotus japonicus Gifu genome v1.2.
CATAAATAACATTGATCATTTGAAAAAGGAAAACAAAGAAAGAGTGTAGAATAGTGTGAAAGCACAAGGAAAGAAGCCAA AAGAGAAAGAGGGAAAAAAAAAAAGGAGAAAAAAAAGGAGAAAAAAACAGAGTAGCCACCACCACCCCACCCACACATTG GCTTTATAAAGAAGGCATGCTTCTTTGAACTTCCCCCTTTCCTCTTTCTTCTCTCTCAATTACTCCATTGCTGATTATTG GGAGGCCTAACTCAATCTAAAAGCTAGCTCAAGAGTTAAGGTTTGCACAACCATATATAAGCAATTGTTTGGCCACATCT CTAGCCAATGTGAGACTCTAACACTGATAATACATCTCCACAATGAGCTTCTACAATATTGAAGACTCTATCTGAGGTTT CACAATAGGCCAAGGTATATATGAAGCAGCTCTACTCATAGCAGTTCTGAGATGGGTTATGTGCTTGGCTTTCAGAGTTA TGAAATCTAGGACACAATCTCTTCACACCCCACCTGAACCTTCTTCTTCTTCTTCATCATGGGAATCTTCCAGTTTCAAC CCTCTACCTTTGACCACTTTTGGTGAGATCATGGAGAGGCTGCCAGAAACTAAGGACACGTGTGCTGTGTGCTTGAACCA GCTGAAAATTGAAGATGAAGTTAGGGAGCTCATGAATTGTTACCATATTTTCCACAAGGAATGCATAGATAGATGGGTGG AGCATGACCATGAGAGTGAAAACCACAACCCTACTTGCCCTCTATGCAGAGCCCCTTTACTGAGTTCTTGTTGTCTTTCA TCAGAGAGCTCAAGCTGTGTGTCTCCTCCTCAGCCTAGCTGGGCTGTGGAGAGACTTCTCTATCTCTTTGGGGATGATCT GCTTCCATGTTAGCTAGTCGCGTGTTTGGAAAACCTTCTACTACAATTGATTTTGAAGCCGAAATCAATTCCGCAGAGAA GCTTCTGTGAGCAGCTTCGGGCGTGTGTCAGAGTCGATTATGAGGAAAGGGAAGCGAATCTAAACATGCTGATGATTTGT TTATGAAATTATAAACTATGCAAAGATAGATTAGGGAATTCATTATTTGTTGAGTTTTCACTGTGATCATCGTCACAAAT ATTATCTGAGTTGAAATCCTCTTGCCTTGTTGGGTGCTGCAGCAAGATAATAAGTTAGATACCACCACACAAATTAGCTA GCTATGAGTTTGTGTGTTTGTACATATAAGTTTCACATTTAACTTATATTGCTTCTAATATATTCCATAATTGAATTTAT GGTTATCTAAGTATTGTAAAAATAATAGGGGCCATATTTTCTCCTCCCTTTCCTCAACTTGCAATCTTCGACTTATGTAA GATCCACTGTGGTAGTATTGTATTGCATATCAAGAATGCAAGCCGCATGGTGTCGTCATTTGATCC
CDS sequence (LotjaGi4g1v0318500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCTTGGCTTTCAGAGTTATGAAATCTAGGACACAATCTCTTCACACCCCACCTGAACCTTCTTCTTCTTCTTCATC ATGGGAATCTTCCAGTTTCAACCCTCTACCTTTGACCACTTTTGGTGAGATCATGGAGAGGCTGCCAGAAACTAAGGACA CGTGTGCTGTGTGCTTGAACCAGCTGAAAATTGAAGATGAAGTTAGGGAGCTCATGAATTGTTACCATATTTTCCACAAG GAATGCATAGATAGATGGGTGGAGCATGACCATGAGAGTGAAAACCACAACCCTACTTGCCCTCTATGCAGAGCCCCTTT ACTGAGTTCTTGTTGTCTTTCATCAGAGAGCTCAAGCTGTGTGTCTCCTCCTCAGCCTAGCTGGGCTGTGGAGAGACTTC TCTATCTCTTTGGGGATGATCTGCTTCCATGTTAG
Protein sequence (LotjaGi4g1v0318500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCLAFRVMKSRTQSLHTPPEPSSSSSSWESSSFNPLPLTTFGEIMERLPETKDTCAVCLNQLKIEDEVRELMNCYHIFHK ECIDRWVEHDHESENHNPTCPLCRAPLLSSCCLSSESSSCVSPPQPSWAVERLLYLFGDDLLPC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| MobiDBLite | 9 | 33 | 25 | - | – | |
| MobiDBLite | 10 | 33 | 24 | - | – | |
| Gene3D | 15 | 109 | 95 | 5.5E-17 | ||
| PANTHER | 20 | 142 | 123 | 3.3E-46 | – | |
| PANTHER | 20 | 142 | 123 | 3.3E-46 | – | |
| SUPERFAMILY | 49 | 109 | 61 | 3.03E-16 | – | |
| Pfam | 53 | 104 | 52 | 5.7E-12 | ||
| ProSiteProfiles | 55 | 104 | 50 | 12.991 | ||
| SMART | 55 | 103 | 49 | 8.0E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0318500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…