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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0318600 |
| Transcript ID | LotjaGi4g1v0318600.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT5G20870.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9M088|E135_ARATH Glucan endo-1,3-beta-glucosidase 5; TrEMBL-Plants: tr|I1LYC0|I1LYC0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0318600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69622561..69624317) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGCACCCAACATTTTACTACGTGCTTTTTGTTAGCACTTTGCATACTAAGCCAAGGTTTTGCAAAAGGTGCTCTTGG CTTTGCTTGTAACTGGGGAACGCGTTTGACGCATCCTCTTCCAGCTGAAGTAACTGTGAAACTCTTGAAGGACAATGGAT TCAACAAAGTGAAGCTCTTTGAAGCGGATCCAATGGCACTGAAGGCTCTTGGGAATTCTGGCATTCAGGTCATGGTTGGT ATTCCTAATGATCTCTTGCAATCCCTTGCTAGCAGTGTTGATGCTGCAATTGCATGGGTTAGCCAAAATGTATCTTCTTA CATATCCAAAGTTGGGGTTGATATAAGGTAATAATATATAGTACTATGCTTATTGTGCTATAAATTCATAACTTTGTTTG AGGAAACTTAAAAGTCAATTCCGATATTTGAACACCCCAATAATATCGACATTCGACATATATTTCATTTTGCTCGTGTA TCTTTTCTTTCTATCAAATCATACCATATATCACATTTATACTTCTCTTTCTGATCCGCACCCGATTAGGGTGTCTGCAA AACACGCTCACTTAAAAGTTCCAAGTGAAGTGCATTTTTGAATTAGTGTTTTGTAAAATTCATAGGTATGTTGCTGTGGG CAATGAAGCTTTTCTCAAAACATACAATGGTCGATTTGTGCAATCCACTTTTCCAGCCATCAAAAACATTCAAGCAGCTC TCATAAAAGCTGGATTAGGAAGGCAAGTGAAGGTGACAACTCCTTTAAATGCTGATGTCTACCAGAGTGATAGTGGTCTT CCATCAGGAGGAAACTTCAGGCCAGACATTCAAGACCAAATGATCTCCATAATCAAGTTTCTCAGCCAAAGCAATTCCCC TCTCACTTTCAACATCTACCCTTTCCTCAGCCTTGATGCAGATCCCAATTTCCCAAAGGAATTTGCCTTCTTTGATGGTT CTGCAGCCCCTGTAGTTGATGGCCCCATATCTTACACCAATGTCTTTGATGCCAACTTTGACACTCTTATTTCAGCTCTT GAAAAAAATGGTTTTGGCTCAATGCCTGTGATAATTGGTGAGGTTGGTTGGCCTACTGATGGATCAGCCAATGCCAACAT CAAGAGTGCTCAGAGATTCAATCAAGGCTTAATTGACAGAATAGTGAAAAAACAAGGAACTCCAAAGAGACCCACCCCAC CAGAAATCTATGTTTTTTCACTTGTTGATGAGGATGCCAAGAGCATTGAACCAGGCCCTTTTGAGAGACACTGGGGAATT TTCAATTTTGATGGATCAATCAAATACCCTTTGAATCTTGGTGGAGGAAAATCACTAGTTGCTGCAAAGGGGGTGAGGTA TTTGACAAAGCAATGGTGTGTCATGTCAACTCAAGCAAATCCTTCAGATTTGGCAGATAGTATGAGCAAAGCATGCACTT ATGCTGATTGCACCTCTCTTGCTCCTGGTGCTTCTTGCAGTGGGCTTGACACAAAAGGAAACGCTTCATATGCATTTAAC ATGTACTATCAAACCATGGATCAGCGCAAAGATTCATGTCAATTCAATGGTCTTTCAGTGATTACTAACATTGATCCTTC ACCTCCTCAAGGTACTTGCAAATTTAGGATCATGATCGATGTGGGGAAGCATGAAAGTAAGCCCACTTCTTTGGCAGCAC CAAAAAGTGAGATAAACTCAATGGTCATGCTGGTTTCAAGCTTCATGTTCACTGTCATGCTATTTCTATTTATTTAG
CDS sequence (LotjaGi4g1v0318600.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCACCCAACATTTTACTACGTGCTTTTTGTTAGCACTTTGCATACTAAGCCAAGGTTTTGCAAAAGGTGCTCTTGG CTTTGCTTGTAACTGGGGAACGCGTTTGACGCATCCTCTTCCAGCTGAAGTAACTGTGAAACTCTTGAAGGACAATGGAT TCAACAAAGTGAAGCTCTTTGAAGCGGATCCAATGGCACTGAAGGCTCTTGGGAATTCTGGCATTCAGGTCATGGTTGGT ATTCCTAATGATCTCTTGCAATCCCTTGCTAGCAGTGTTGATGCTGCAATTGCATGGGTTAGCCAAAATGTATCTTCTTA CATATCCAAAGTTGGGGTTGATATAAGGTATGTTGCTGTGGGCAATGAAGCTTTTCTCAAAACATACAATGGTCGATTTG TGCAATCCACTTTTCCAGCCATCAAAAACATTCAAGCAGCTCTCATAAAAGCTGGATTAGGAAGGCAAGTGAAGGTGACA ACTCCTTTAAATGCTGATGTCTACCAGAGTGATAGTGGTCTTCCATCAGGAGGAAACTTCAGGCCAGACATTCAAGACCA AATGATCTCCATAATCAAGTTTCTCAGCCAAAGCAATTCCCCTCTCACTTTCAACATCTACCCTTTCCTCAGCCTTGATG CAGATCCCAATTTCCCAAAGGAATTTGCCTTCTTTGATGGTTCTGCAGCCCCTGTAGTTGATGGCCCCATATCTTACACC AATGTCTTTGATGCCAACTTTGACACTCTTATTTCAGCTCTTGAAAAAAATGGTTTTGGCTCAATGCCTGTGATAATTGG TGAGGTTGGTTGGCCTACTGATGGATCAGCCAATGCCAACATCAAGAGTGCTCAGAGATTCAATCAAGGCTTAATTGACA GAATAGTGAAAAAACAAGGAACTCCAAAGAGACCCACCCCACCAGAAATCTATGTTTTTTCACTTGTTGATGAGGATGCC AAGAGCATTGAACCAGGCCCTTTTGAGAGACACTGGGGAATTTTCAATTTTGATGGATCAATCAAATACCCTTTGAATCT TGGTGGAGGAAAATCACTAGTTGCTGCAAAGGGGGTGAGGTATTTGACAAAGCAATGGTGTGTCATGTCAACTCAAGCAA ATCCTTCAGATTTGGCAGATAGTATGAGCAAAGCATGCACTTATGCTGATTGCACCTCTCTTGCTCCTGGTGCTTCTTGC AGTGGGCTTGACACAAAAGGAAACGCTTCATATGCATTTAACATGTACTATCAAACCATGGATCAGCGCAAAGATTCATG TCAATTCAATGGTCTTTCAGTGATTACTAACATTGATCCTTCACCTCCTCAAGGTACTTGCAAATTTAGGATCATGATCG ATGTGGGGAAGCATGAAAGTAAGCCCACTTCTTTGGCAGCACCAAAAAGTGAGATAAACTCAATGGTCATGCTGGTTTCA AGCTTCATGTTCACTGTCATGCTATTTCTATTTATTTAG
Protein sequence (LotjaGi4g1v0318600.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTQHFTTCFLLALCILSQGFAKGALGFACNWGTRLTHPLPAEVTVKLLKDNGFNKVKLFEADPMALKALGNSGIQVMVG IPNDLLQSLASSVDAAIAWVSQNVSSYISKVGVDIRYVAVGNEAFLKTYNGRFVQSTFPAIKNIQAALIKAGLGRQVKVT TPLNADVYQSDSGLPSGGNFRPDIQDQMISIIKFLSQSNSPLTFNIYPFLSLDADPNFPKEFAFFDGSAAPVVDGPISYT NVFDANFDTLISALEKNGFGSMPVIIGEVGWPTDGSANANIKSAQRFNQGLIDRIVKKQGTPKRPTPPEIYVFSLVDEDA KSIEPGPFERHWGIFNFDGSIKYPLNLGGGKSLVAAKGVRYLTKQWCVMSTQANPSDLADSMSKACTYADCTSLAPGASC SGLDTKGNASYAFNMYYQTMDQRKDSCQFNGLSVITNIDPSPPQGTCKFRIMIDVGKHESKPTSLAAPKSEINSMVMLVS SFMFTVMLFLFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 11 | 462 | 452 | 1.0E-236 | – | |
| PANTHER | 11 | 462 | 452 | 1.0E-236 | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 471 | 449 | - | – | |
| Gene3D | 28 | 352 | 325 | 2.3E-111 | – | |
| Pfam | 31 | 346 | 316 | 7.2E-65 | ||
| SUPERFAMILY | 31 | 346 | 316 | 1.66E-78 | ||
| ProSitePatterns | 262 | 275 | 14 | - | ||
| Pfam | 365 | 432 | 68 | 9.1E-17 | ||
| SMART | 365 | 449 | 85 | 1.8E-30 | ||
| TMHMM | 472 | 491 | 20 | - | – | |
| Phobius | 472 | 491 | 20 | - | – | |
| Phobius | 492 | 492 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0318600.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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