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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0318900 |
| Transcript ID | LotjaGi4g1v0318900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G43270.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q43062|PME_PRUPE Pectinesterase/pectinesterase inhibitor PPE8B; TrEMBL-Plants: tr|A0A151SSL2|A0A151SSL2_CAJCA Pectinesterase/pectinesterase inhibitor PPE8B; Found in the gene: LotjaGi4g1v0318900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69665343..69668842) extracted from Lotus japonicus Gifu genome v1.2.
GTACATGCATGGGTTGATCCCATGTTTTAAAAACCGGATTGGTAATTGAAACAGTGTAACTCATTCACAGCTTTTAATTA TTCAAAATGATGATTAGTCACTAATTAATTACTAGTACTATAGTTTTTTTTTATGTGAGATTGATACTGATTACAAATTA CTAGTACATGCATGGAGTAGTTCTTTTTCATATTCAGTCTATATCTTTTCTCTAGTTTCTTGTTTATTTTATCAGCCTCA CATTTACGCCACTGAAATGTGGTGTAAAGATGAAAGAATATGACACATTCATTGTTCTTTTGCTTCTTTTCAATTTCAGA GCCCACCCTCTGAAATTCCTACATCAACATTCGATCGAATCTCTTTACCTTTAAATACTCCTCACCACCTCTCACTTTCT TGCTCATTACATCCTAAAACTTGTTTTTTAATTTTTATTTTCTTCTTTCTTCCAAAATGGTTCTCTCTTCAACACTCACT CCCACCACACTCATCCTCTTGCTAATCCTGTCCCTCCAAGCCTGCACCACCCAATCTTCTGCTGCTTCCGTCACTGATTT CTCAGGATCAGCCTGCCTCAGAGTTTCAACAACCAGATTCATTGACTCTGTAAGCAAAGTCATTGATGTTCTGGGAGATG TCTCATCCATTCTCAAACCCTTCGCCAGCAGAATTTTTCACAACTTTCGTCTCACAAACGCCGTGTCTGACTGTCTGGAC TTGATTGACATGGCTTCTGAAGATCTTAGATGGTCTATTTCCGCCACCCAGAACCCCAAAGGTACAATGTTTACTGCTAA CACCACCATTTTCTAAAATACTCTGTTTTTCCTCTGTTCTTACATGCTCTGTTATTTCCCCTGTTCTTACATTTTCTAAC AGAAAATACTAAAAGTTACTAGTTAACCCATGATTTCCATTAAATAACTCATTTATCTTTGTCACATATCAAAATTTCTT GCAATATTCCTTCATAATAGGCCATAGCATTGTTGTTTTGTATTAACATACTCTGTTATTCCCCTGTTCTTACATTTTAA TTGTTGCAGGGAAGAATAATAGCACTGGAAACTTAAGCTCTGATCTGAAAACATGGCTGAGTGCTGTACTATCACATCCA GAGACTTGCATTGAAGGATTTGAAGGTACAAACAGCATTGTGAAGGGTCTTGTATCAAGTGGACTAGGGGAAGTGATGTC CTTGGTGAGAGAGCTTCTTTTCCAAGTGGTCCCTGATTCAGATCCATCAAGCACTAGCAAGGGTGGTGAATTTCCTTCAT GGGTTAAAGCAGAGGATGAGAAGCTCTTACAGGAAAATGGGGTGGTTCCGGATGCGGTGGTGGCGGCGGATGGGAGCGGG AACTACACGACGGTGATGGAGGCGGTGCTGGCGGCACCTGATTATAGCATGAAACGTTTTGTGATATATGTGAAGAAGGG TGTTTATGAAGAGTATGCTGAGATCAAGAAGAAGAAATGGAACATCATGATGGTTGGTGATGGCATGGATGTTACGGTTA TTTCCGGTAACCGGAGCTTTGGGGACGGCTGGACCACTTTCAAATCAGCTACATTTGGTACTAACACTGCTCACTCACCA CAACTCATCATCTATCTTCTCATTCTTTCATTTCCTAGTTATTATTATAGGCTAAAAATTTCTCTAAGAAATGAAAATTG CCATCAATTTAAATTTAGTGCGTTTGGATACATAACACATAATTAGTAAAGCCCAAATTATAATGGACAGTTGCAAAAGT TAAGTGAAGTTGCTTCTGTCTATTATGATTTTGATATCATAATGATCGGGGTTTTTACCGCTTTATCTTCTCTCTAGCGC TTTCAGACAGGTCGGTCATCTTACTGCAACAAAGCAAGCTTAGGAAAAAATCTAATGAAAATTTAGCTAACTGGATATCT AAACAAGCATTTAATATGATGAAAATTCAAAAGATGCACTGATTTGTGATACAATCTTCTGTTCACACCCACAAAAGAGG GTTTCAAGAAACTTGGATTAACAAGATTTAACTCTCACCTCCCAATAAATTAAGGGTTCGAGTTCTCCTGCTGTCATTAA AATCTTAGTTGGTGGGCAACTCTCCAGCATGTCACTAGTGCTCATGCCTAGGAGTGAGCATTTGCCGCTCTCTCCAACAT GTCACTAGCATCCTGCCCAATAGTCCGGATATATCTCTTTCAATTCGTCTATTTTATGTTGGAAAAAAAGAGGGGTTTCA CTTTTCTATTACCTTTGCAGGTAAGCAATCTTAAAAATAGATTGAACTTTCAACAAACACCTTGTAGGACCTCAAATCTT AACATTAAACATCAACTAACACAATTCATATCCACAACTAACTCCTAATTAAAATCAAATTAATGAGCATGTGCCACAAT TAAAAACCTTAACCCCAACTCAATTTCTTCTTATGCATGTGTAGCTGTCAGTGGTAGAGGATTCATAGCACGAGGCATCA CCTTCCAGAACACGGCAGGCCCAGAGAAACACCAAGCAGTAGCCCTGAGATCCGACTCCGACCTCGCCGTGTTCTTCCGA TGTTCCATCACCGGCTACCAAGACAGCCTCTACCCTCACACCATGCGGCAGTTCTACAAAGAATGCAGAATCACCGGCAC GGTGGATTTCATCTTTGGCGACGCCACCGCCGTCTTCCAAAACTGCAACATCCAAGCTAGAAAAGGCTTGCAGGATCAGA AAAACACAATCACAGCTCAAGGGCGCAAAGATCCTGGTCAATCATCTGGTTTCTCGTTTCAGTACTGCAATATCACTGCA GATTCTGAACTTCTACCTTCAGTTGGTTCCATCCAAACGTACCTTGGAAGACCGTGGAAGGAGTATTCAAGAACAGTTTT CATGCAATCGTTCATGAGTGATGTGGTGAGTTCACAAGGGTGGTTAGAGTGGAATACAAGTTTTGATGATACATTGTTCT ATGGTGAGTATTTGAATTATGGAGCTGGTGCTGGAGTTGGTAACAGAGTGAAATGGGGAGGGTATCATGTGTTGAATGAT TCAGAGGCTGGGAAATTCACTGTTAATCAATTTATTGAGGGGAATCTGTGGTTGCCTTCTACAGGTGTAGCTTACACTGG TGGATTGTGAGTTTGAAGGGAACTGGAAATAGTGTACTTATTATAGAAGTTATGATTATTATTCAAATTGTCACCTTCGC GTTCTAATTCTGTTTGTGACTCTTGTGTTTTAGGCAAACATGTTCGGTTGCCTTTTAGTTCATCTGAAACTATTACTTTG AGACCATTTGATATTTTGCATAGTGATTTATGGACGTCTCCTGTTTTAAGTACTGCTGGTCATCGTTATTACGTTTTGTT TTTGGATGATCACACTGATTTTTTATGGACGTTTCCGATCAGCAAGAAATCTCAGGTTTATGAACTGTTTACTACTCTTG CTACACTTATTAAAACACAATTTTCAGCAAATATTAAATGTCTTCAATGTGATAATGGAC
CDS sequence (LotjaGi4g1v0318900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTCTCTTCAACACTCACTCCCACCACACTCATCCTCTTGCTAATCCTGTCCCTCCAAGCCTGCACCACCCAATC TTCTGCTGCTTCCGTCACTGATTTCTCAGGATCAGCCTGCCTCAGAGTTTCAACAACCAGATTCATTGACTCTGTAAGCA AAGTCATTGATGTTCTGGGAGATGTCTCATCCATTCTCAAACCCTTCGCCAGCAGAATTTTTCACAACTTTCGTCTCACA AACGCCGTGTCTGACTGTCTGGACTTGATTGACATGGCTTCTGAAGATCTTAGATGGTCTATTTCCGCCACCCAGAACCC CAAAGGGAAGAATAATAGCACTGGAAACTTAAGCTCTGATCTGAAAACATGGCTGAGTGCTGTACTATCACATCCAGAGA CTTGCATTGAAGGATTTGAAGGTACAAACAGCATTGTGAAGGGTCTTGTATCAAGTGGACTAGGGGAAGTGATGTCCTTG GTGAGAGAGCTTCTTTTCCAAGTGGTCCCTGATTCAGATCCATCAAGCACTAGCAAGGGTGGTGAATTTCCTTCATGGGT TAAAGCAGAGGATGAGAAGCTCTTACAGGAAAATGGGGTGGTTCCGGATGCGGTGGTGGCGGCGGATGGGAGCGGGAACT ACACGACGGTGATGGAGGCGGTGCTGGCGGCACCTGATTATAGCATGAAACGTTTTGTGATATATGTGAAGAAGGGTGTT TATGAAGAGTATGCTGAGATCAAGAAGAAGAAATGGAACATCATGATGGTTGGTGATGGCATGGATGTTACGGTTATTTC CGGTAACCGGAGCTTTGGGGACGGCTGGACCACTTTCAAATCAGCTACATTTGCTGTCAGTGGTAGAGGATTCATAGCAC GAGGCATCACCTTCCAGAACACGGCAGGCCCAGAGAAACACCAAGCAGTAGCCCTGAGATCCGACTCCGACCTCGCCGTG TTCTTCCGATGTTCCATCACCGGCTACCAAGACAGCCTCTACCCTCACACCATGCGGCAGTTCTACAAAGAATGCAGAAT CACCGGCACGGTGGATTTCATCTTTGGCGACGCCACCGCCGTCTTCCAAAACTGCAACATCCAAGCTAGAAAAGGCTTGC AGGATCAGAAAAACACAATCACAGCTCAAGGGCGCAAAGATCCTGGTCAATCATCTGGTTTCTCGTTTCAGTACTGCAAT ATCACTGCAGATTCTGAACTTCTACCTTCAGTTGGTTCCATCCAAACGTACCTTGGAAGACCGTGGAAGGAGTATTCAAG AACAGTTTTCATGCAATCGTTCATGAGTGATGTGGTGAGTTCACAAGGGTGGTTAGAGTGGAATACAAGTTTTGATGATA CATTGTTCTATGGTGAGTATTTGAATTATGGAGCTGGTGCTGGAGTTGGTAACAGAGTGAAATGGGGAGGGTATCATGTG TTGAATGATTCAGAGGCTGGGAAATTCACTGTTAATCAATTTATTGAGGGGAATCTGTGGTTGCCTTCTACAGGTGTAGC TTACACTGGTGGATTGTGA
Protein sequence (LotjaGi4g1v0318900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLSSTLTPTTLILLLILSLQACTTQSSAASVTDFSGSACLRVSTTRFIDSVSKVIDVLGDVSSILKPFASRIFHNFRLT NAVSDCLDLIDMASEDLRWSISATQNPKGKNNSTGNLSSDLKTWLSAVLSHPETCIEGFEGTNSIVKGLVSSGLGEVMSL VRELLFQVVPDSDPSSTSKGGEFPSWVKAEDEKLLQENGVVPDAVVAADGSGNYTTVMEAVLAAPDYSMKRFVIYVKKGV YEEYAEIKKKKWNIMMVGDGMDVTVISGNRSFGDGWTTFKSATFAVSGRGFIARGITFQNTAGPEKHQAVALRSDSDLAV FFRCSITGYQDSLYPHTMRQFYKECRITGTVDFIFGDATAVFQNCNIQARKGLQDQKNTITAQGRKDPGQSSGFSFQYCN ITADSELLPSVGSIQTYLGRPWKEYSRTVFMQSFMSDVVSSQGWLEWNTSFDDTLFYGEYLNYGAGAGVGNRVKWGGYHV LNDSEAGKFTVNQFIEGNLWLPSTGVAYTGGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 29 | 29 | - | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| PANTHER | 11 | 512 | 502 | 1.6E-213 | – | |
| PANTHER | 11 | 512 | 502 | 1.6E-213 | – | |
| Phobius | 21 | 29 | 9 | - | – | |
| SMART | 27 | 167 | 141 | 1.7E-7 | ||
| CDD | 28 | 172 | 145 | 1.1513E-34 | – | |
| Phobius | 30 | 512 | 483 | - | – | |
| Pfam | 39 | 150 | 112 | 1.2E-12 | ||
| Gene3D | 48 | 164 | 117 | 1.1E-5 | ||
| SUPERFAMILY | 64 | 160 | 97 | 8.11E-12 | ||
| Gene3D | 200 | 512 | 313 | 8.4E-127 | ||
| Pfam | 203 | 498 | 296 | 6.3E-140 | ||
| SUPERFAMILY | 203 | 511 | 309 | 7.53E-107 | ||
| ProSitePatterns | 347 | 356 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi4g1v0318900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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