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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0319300 |
| Transcript ID | LotjaGi4g1v0319300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT2G26450.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q7Y201|PME13_ARATH Probable pectinesterase/pectinesterase inhibitor 13; TrEMBL-Plants: tr|I1MS31|I1MS31_SOYBN Pectinesterase; Found in the gene: LotjaGi4g1v0319300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69692681..69696249) extracted from Lotus japonicus Gifu genome v1.2.
GATTTTGCTGGTGTGCATTTGCTTGGGGAACAGATGTGGCAGCATGCCATGTTGGGTTTGTTTACTCGTTATACTTGTGT TCTACTTTTGGTCACAGAAAAAAGGAGAGAAGGATATTGAAAGTTGGTGTCAATGAAGGGAAACAAGGTTGAATGGAATT GAAGGTGCTAATATTAGTTTTCTGTCACACATCCTTTAAACCAACTTTCTAAACATAGAAACACCTGAAATCTCTCTCGT CCACTCCAACCTTGGTGTCACCCATGCAAACCAACCACATTAAAGTTCCAAAATCATCACACAAACCAACTTGGAAAATT TAGGACTAACCATCCTTGGAATCCCTTACCATCTCTCTTCCCCGTGATTGGTTTGCACCCTAAGGCAGAGAGAGCCAACC CTCTGCCTTAGACAATTTCTCACAAAAATGGCATTCCAAGATTTCGACGTCATCTCAGAAAGAAGAAGGAATGAGCAGAG GCAAAAGCTGAAGAAAAGGATCATTATTGGTGTTGTCTCCACCATTCTCCTTGTTGGTATCATTGGTGCTGCATTCTTTG TTGCCACCACAGAATATGGCTTTGGAGGTAACAATGCTAAAGAGGGTCATGACCAAGATTCATCCACAAGCAGCAGACAA CATGTTCAACATTCAGAGAAGATGGTGAAACTTGTTTGCAGCAATGCAAGTTACAAGGACAAATGTGAAGGCCCTCTCAA CAAGGCAGTGAAGGATGATCCAAAACTTTCAAATCCCAAAGACCTTCTTAAAACTTATGTGAAATATGCAGAGGAAGAGG TGAACAAGGCTTTTAACAAAACCAACTCCTTCAAGTTCGAATCTGAAGAAGAGAAAGGAGCATTTGAGGATTGCAAGCAG CTGATTCGCGACGCGAAAGACGACTTAGCAACCTCCATCTCAGAATTGGGCAAGATTGAACTCTCCAAGCTCTCTTCAAG ATCTCCTGACTTGAACAGTTGGCTCAGTGCTGTCATCTCTTTCCAGCAAACCTGTGTCGATGGTTTCCCCGAGGGAAAGC TGAAGAATGACATCCAGGGTCTCTTCAATGGTACCAATGAGTTCATTAGCAACTCCCTCGCCATCGTTTCGCAGGTGTCC ACGGTGCTTTCTACATTCCAAACACTTGCAAGCGGTCGTTTGTTGCTGTCTGAGAATTCCAATTCCCCTGCTGCTTCTTT GGACAGTGATGGATTTCCTTCTTGGGTTCATGTTGATGACAGAAGGTTGTTGAAGGCTGCAGACAACAGGCCTAAACCTA ATGTCACCGTGGCGAAAGATGGCAGTGGAGATTTCAAAACCATTTCTGAAGCTTTGAACAAAATCCCTGCAACTTATAAA GGAAGGTAATGCTAGCTCCTCTCAATCCTCTAGACTCTCTATAACTAATTCACATTAGCACCTAGTATATGGAAGAGGAA ATTCCACCAGGGTTTTAAATTGCAATTCCAACAGGCCTACACCTAATGTGGTCATGTTGAGGCAGCAATTCCTGATGCGG GGACAACAAAACCTGTTACATTGCGGTTACATACCACAATTTGAAACCATTTTCCATCATCTTATTGCTATTGATAATAA TAGCATGTTTGGTGGTGCCAGGGTGAAATGCTCAAGAGTCGCTTCTGATTAGAACTTACAAATCTGGCAAAGTAAAATTG ATTATGGATGAAAATATTGATGTTAGAGTCATTTTAGAGAATTCATTTGAGATCCGAAATCAATTTGGTAGAGGCTAGCG AGAATAGCTTTTGTTTGAACATATTCAATTGTGAGATCTTACGATAGGATTTCACAACATTACCTAACAAAATTTACATT TTCATAAATGTATCCAAACATAAATCATTTCACTTTCAGCTTACTTTAACGCTGATTTAACACACACTTAGCTTTTGAGT TAACATGTCATGAATTCTATGCAAATCCTGAAATCAGACATGTATGCCTAAGTTGCATTTTTATTATGTTAGGAATGTTT GAGTTTGACCATGTGAGGTGTGATTTAGTGGTTTTAAAAAATGCAGGTATGTGGTTTATGTTAAAGAAGGAGTGTACGAT GAGCAAGTGACAGTGACCAAGAAAATGCAAAATGTTACCATGTATGGAGATGGATCCCAAAAGAGTATCATCACTGGCAG CAAAAACTTCAGGGATGGAGTCAGAACTTTCCAAACTGCAAGTTTTGGTAAGTTTACAATAAAACTAAAGTACTAAACTC TCTTTACCATAAAAACAAAAGTGGTGCAAACGAGGTACTCAATGTGTGCTTGGTTCCATGTTTGAGAGTCTTAGAAATAG ATATCTATGATAAAACTAAAGTACTAAACTCCTTTTACCATGCATGGTGCAGTGGTGCTTGGAGATGGATTCTTGGGCCT AGCAATGGGATTCAGAAACACTGCAGGCCCTGAAGGGCACCAAGCAGTGGCTGCAAGAGTACAAGCAGATCGCTCAGTTT TCGCCAATTGCCGCTTTGAGGGATACCAAGACACCCTCTACACACAAACCCACAGACAGTTCTACAGAAGCTGCATAGTT GCAGGCACAATAGACTTCATCTTTGGTGATGCAGCTGTGGTGTTCCAAAACTGCATCATGGTTGTGAGAAAACCAATGGA CAACCAGCAAAACATGGTCACAGCTCAAGGGAGAATGGACAAGCACCAACCCACTGGAATTGTTCTTCAAAAATGTACAA TCAAAGCTGATCCCAGTTTGATTCCTGTGAAGGACAAGATCAGAAGCTACCTTGGGAGGCCATGGAAGGAGTTCTCAAGA ACTATTGTTATGGAATCTGAAATTGGTGATTTCATTCATCCTGATGGGTGGACACCTTGGATGGGGAACTTTGCACTCAA CACATTGTATTATGCTGAGTTCAACAACAATGGACCTGGTGCAAGCACCAACGCTAGGGTCAAGTGGCCTGGCTACAAGG TTATTAACAGAGATGAAGCTAGCAAGTTCACTGTGGGAACTTTCTTGAGAGGCTCTTGGGTTCAGGGCTCTGGTGTGCCT GCTGTGCAGGGCTTCTACAAATAAACACTGAGTCTGTTCTGATGCGGACTTATTAGAGCTTATCAGAGCTTATCTGCTAG AGAATGAACTAAATAAGTATCATTAAATGTTCTTTAGTTTGCGTCCAAACGGGTACATTGGCTTCAAATGCATGCACCAT TCAATCCATGCTACTTAGTTGAATGCTATTGAGCCAATGACATGTGACTTAATGGTTTTGATGAATTTTAATATTTTTTT CTACTTTTTGTTTCTTTTTAACCATAAAAAATTTGAAAATGTTTAATCTTGAGTTGTATTGTTGGACTAATTACAGTGGA ATGGAAAAACTTGCATAGGATTGTATCACCAAATGATAAAGTAAATAGAATTATATACAAGTACTTATCTGTTCCTGTTG TCCATCTGAAATCTGATATGTTCATAGAATTTTACCATTTTGCAATATTGTCATCCTCTCAGTGCAGCTTCTAATTGATG AGTTCCTCTGTCCTCATCATGAATAGGGTAAATACAATGACCTAATAAG
CDS sequence (LotjaGi4g1v0319300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTCCAAGATTTCGACGTCATCTCAGAAAGAAGAAGGAATGAGCAGAGGCAAAAGCTGAAGAAAAGGATCATTAT TGGTGTTGTCTCCACCATTCTCCTTGTTGGTATCATTGGTGCTGCATTCTTTGTTGCCACCACAGAATATGGCTTTGGAG GTAACAATGCTAAAGAGGGTCATGACCAAGATTCATCCACAAGCAGCAGACAACATGTTCAACATTCAGAGAAGATGGTG AAACTTGTTTGCAGCAATGCAAGTTACAAGGACAAATGTGAAGGCCCTCTCAACAAGGCAGTGAAGGATGATCCAAAACT TTCAAATCCCAAAGACCTTCTTAAAACTTATGTGAAATATGCAGAGGAAGAGGTGAACAAGGCTTTTAACAAAACCAACT CCTTCAAGTTCGAATCTGAAGAAGAGAAAGGAGCATTTGAGGATTGCAAGCAGCTGATTCGCGACGCGAAAGACGACTTA GCAACCTCCATCTCAGAATTGGGCAAGATTGAACTCTCCAAGCTCTCTTCAAGATCTCCTGACTTGAACAGTTGGCTCAG TGCTGTCATCTCTTTCCAGCAAACCTGTGTCGATGGTTTCCCCGAGGGAAAGCTGAAGAATGACATCCAGGGTCTCTTCA ATGGTACCAATGAGTTCATTAGCAACTCCCTCGCCATCGTTTCGCAGGTGTCCACGGTGCTTTCTACATTCCAAACACTT GCAAGCGGTCGTTTGTTGCTGTCTGAGAATTCCAATTCCCCTGCTGCTTCTTTGGACAGTGATGGATTTCCTTCTTGGGT TCATGTTGATGACAGAAGGTTGTTGAAGGCTGCAGACAACAGGCCTAAACCTAATGTCACCGTGGCGAAAGATGGCAGTG GAGATTTCAAAACCATTTCTGAAGCTTTGAACAAAATCCCTGCAACTTATAAAGGAAGGTATGTGGTTTATGTTAAAGAA GGAGTGTACGATGAGCAAGTGACAGTGACCAAGAAAATGCAAAATGTTACCATGTATGGAGATGGATCCCAAAAGAGTAT CATCACTGGCAGCAAAAACTTCAGGGATGGAGTCAGAACTTTCCAAACTGCAAGTTTTGTGGTGCTTGGAGATGGATTCT TGGGCCTAGCAATGGGATTCAGAAACACTGCAGGCCCTGAAGGGCACCAAGCAGTGGCTGCAAGAGTACAAGCAGATCGC TCAGTTTTCGCCAATTGCCGCTTTGAGGGATACCAAGACACCCTCTACACACAAACCCACAGACAGTTCTACAGAAGCTG CATAGTTGCAGGCACAATAGACTTCATCTTTGGTGATGCAGCTGTGGTGTTCCAAAACTGCATCATGGTTGTGAGAAAAC CAATGGACAACCAGCAAAACATGGTCACAGCTCAAGGGAGAATGGACAAGCACCAACCCACTGGAATTGTTCTTCAAAAA TGTACAATCAAAGCTGATCCCAGTTTGATTCCTGTGAAGGACAAGATCAGAAGCTACCTTGGGAGGCCATGGAAGGAGTT CTCAAGAACTATTGTTATGGAATCTGAAATTGGTGATTTCATTCATCCTGATGGGTGGACACCTTGGATGGGGAACTTTG CACTCAACACATTGTATTATGCTGAGTTCAACAACAATGGACCTGGTGCAAGCACCAACGCTAGGGTCAAGTGGCCTGGC TACAAGGTTATTAACAGAGATGAAGCTAGCAAGTTCACTGTGGGAACTTTCTTGAGAGGCTCTTGGGTTCAGGGCTCTGG TGTGCCTGCTGTGCAGGGCTTCTACAAATAA
Protein sequence (LotjaGi4g1v0319300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFQDFDVISERRRNEQRQKLKKRIIIGVVSTILLVGIIGAAFFVATTEYGFGGNNAKEGHDQDSSTSSRQHVQHSEKMV KLVCSNASYKDKCEGPLNKAVKDDPKLSNPKDLLKTYVKYAEEEVNKAFNKTNSFKFESEEEKGAFEDCKQLIRDAKDDL ATSISELGKIELSKLSSRSPDLNSWLSAVISFQQTCVDGFPEGKLKNDIQGLFNGTNEFISNSLAIVSQVSTVLSTFQTL ASGRLLLSENSNSPAASLDSDGFPSWVHVDDRRLLKAADNRPKPNVTVAKDGSGDFKTISEALNKIPATYKGRYVVYVKE GVYDEQVTVTKKMQNVTMYGDGSQKSIITGSKNFRDGVRTFQTASFVVLGDGFLGLAMGFRNTAGPEGHQAVAARVQADR SVFANCRFEGYQDTLYTQTHRQFYRSCIVAGTIDFIFGDAAVVFQNCIMVVRKPMDNQQNMVTAQGRMDKHQPTGIVLQK CTIKADPSLIPVKDKIRSYLGRPWKEFSRTIVMESEIGDFIHPDGWTPWMGNFALNTLYYAEFNNNGPGASTNARVKWPG YKVINRDEASKFTVGTFLRGSWVQGSGVPAVQGFYK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 12 | 594 | 583 | 0.0 | – | |
| PANTHER | 12 | 594 | 583 | 0.0 | – | |
| Phobius | 25 | 46 | 22 | - | – | |
| TMHMM | 25 | 47 | 23 | - | – | |
| Phobius | 47 | 596 | 550 | - | – | |
| MobiDBLite | 56 | 75 | 20 | - | – | |
| TIGRFAM | 68 | 230 | 163 | 4.1E-17 | ||
| SMART | 75 | 226 | 152 | 2.5E-30 | ||
| Gene3D | 76 | 234 | 159 | 4.2E-12 | ||
| SUPERFAMILY | 78 | 230 | 153 | 1.06E-23 | ||
| Pfam | 79 | 226 | 148 | 1.5E-19 | ||
| CDD | 82 | 232 | 151 | 1.91245E-35 | – | |
| Gene3D | 279 | 594 | 316 | 6.9E-125 | ||
| SUPERFAMILY | 282 | 589 | 308 | 8.37E-105 | ||
| Pfam | 285 | 580 | 296 | 2.7E-141 | ||
| ProSitePatterns | 429 | 438 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi4g1v0319300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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