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LotjaGi4g1v0320000.2

Overview

Field Value
Gene ID LotjaGi4g1v0320000
Transcript ID LotjaGi4g1v0320000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Eukaryotic translation initiation factor 3 subunit K; TAIR: AT4G33250.1 eukaryotic translation initiation factor 3K; Swiss-Prot: sp|Q94HF1|EIF3K_ORYSJ Eukaryotic translation initiation factor 3 subunit K; TrEMBL-Plants: tr|I3SP58|I3SP58_LOTJA Eukaryotic translation initiation factor 3 subunit K; Found in the gene: LotjaGi4g1v0320000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:69765108..69767701) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGAAGAGAAAGAGAACAAGCACAGGTTGGTTACGCAGTGGAGCAGCTTCTTGCTCTCAATCCCTACAATCCTGACAT TCTTCCAGATCTCGAAAACTATGTCAATGACCAGGTACGTTATGCACGATTTCCCGCTTTCGCAATTCGGTTTTTTCTCT GTTGTTGACGTAAACCTAAAATGTATGTGCAATTTTACAGGTTTCATCACAAACATACAGTCTGGATGCAAATCTGTGCC TTCTTCGTCTCTACCAGGTATTTGTGTTACCATTCCCCTTAGAAGAATCAGAGCATTCGTTTTGTGATTGTTTGTTATTT AATCATTATTACTACCAGTGTTATCAAATAGTGGCGCTACACCGCTATAGCGTAGCGGATTTTTGGCTAATCGTGACGCC ACTATTGCCCACTATAGTGCGCTATTCGCAGCTAAATAGAGGCCGAAATAGCGGATTTTTAGCTCACCGCGATGGTCCGC GATTTGACAACATTGATTACTACTAGTTTCTGGTGTTCTTAATATTTGTTTGTTATTTCATTATTGGGTTTAAGATCATT GGCTTAGTGGAACTCTTGAAATGATTGGCGGGTTTACGAGTAAGTAATTGTTTTTCTGTTTGTTATTGCAGTTTGAACCA GAGAAAATGAGTTCCCAGATTGTAGCCCGCATATTGGTTAAGGTTCGGCTAAGCTTTTATTTTGGATGTGTTTACTAGTT TGTAGTTCTTACTGTCGAACTGGATAGTAGTGGATTTCGGTACGTGCTCATGTCTTTGTTTTTTGTTTTTGGGCTCATGT CTTTGTTTTTTGTTTTTGTTTTTGTGCAGGCCCTCATGGCAATGCCAGCTCCTGACTTCAGTCTGTGTCTCTTTCTGATT CCTGAACGTGTGGTATGGGTCTTACGAATTATTCTTTGCTTTGTTGTGGTAGTTCTTCTTGCTCTCAGCAACAGTTGCAC ACATGACTAGTTGTTTGAACATGTGTGTTTGAGACTTTTAATAAGTTGGACTTGGTAATCATGTGCAATTTCATGAATTT CTCTCATTTAACCTGGAATATTTTTGCGGGGTTCCTATTAGTATCTGGCATTCATCCTTTTTTATTAGGAATCTTCTATT TGAATTTGTCTAACTGTGCCATGATGAGTTCATTTCCTCCTTATACTCAATGTGCGGCATTTTAATTTGAAGTTTTTTTA CTAACTTTTGTTTACTTATGAATCTTAGCAAATGGAGGAGCAGTTCAAGACTCTGATTGTTCTGTCTCACTATTTGGAGG TATGCATCAGCCTTAGTTGCCCATGTCTTATGTAGTTTAGAATTTGAAATTAATACACCTCTCATCTCCAGACAGGAAGG TTTCGGCAGTTTTGGGATGAAGCAGCAAAAAGTCGTCATATAGTTGAAGCTGTGCCAGGTAATTATGCATTTTTTATTTA TGAAATTATAAGTTGCTGTTACCACCAATAAACTTTGAAGAATGTAATCAACAAATCTATATTCAGAAAAGTTTTAGTTT GGACACCTTGTTAGTTCTTTATTTTATCATGCTCTATCTATCTGGTTAATAGGGTCTTGTCATTTTGAAGCCTCATGATT CTGCTTGTCATGAAATTAAGCATATATCATATGACTTTCCTTACATCTTGTGCAGTATGATTTTTTACAGAACATTGTTG CGTATTTACCTTTTTTTAGCTTCAGCACTCATTATAATGTAAGGAACATTGGTTGCCTATTTATCTCATTATAATGAAGT TCAACAGAACATTGTTGCCTATTTACCTTTTATCATGCTCTATCTATCTTTATGAACCTATTTTTCTTGTTTAAGGTTGT CATTGGTTGAGCTTCATAGCTTCAGCTTCTTCATTAATGCATGCTTAAATACTAGCTTATGTTGAAATGAATTGCAGGAT TTGAGCAGGCAATCCAGAGCTATGCGGTTCATGTCATTTCCTTGACTTACCAAAAGGTTCCTAGAACTGTGCTTGCTGAG GTATGCTTGTAGTTTTGTCCATTTGAAGATTGGTTCATTTTTTCGCTGTTTGTTTTGTCTTAAGCTAATATCTGCTTGCA CAGTCCATTGCATTACTTCTCTAATGGCTAGTTGAACACATTATTGATATCACTCAGATTTATAATACCACACTTATATT CTTTACTGTTTAAGTGGTTCACGAAAACTTTTGCAGTTGTTATTTACATTCTTCTGCTTTTCAAAATACAAGTTTGTCAA ACTATTGTTCTGTAGTCTTTACTGAGTGATAGGTTCTGTGGTTTTTTTTGCTTTATGACTTTGACATACTTGTATGATCT TCATATAGGAAGTTGGTTTCTCATGTTTTCTGAAGTATAATACCATTTATTTTGTTTTGAACTTTTATAGGCTATCAACG TTGAAGGTTTATCCTTGGACAAATTCCTTGAACACCAAGTTGCCAACTCTGGTTGGGCTATTGAGAAAAGCCAAGGCAAG GGTCAACTCATTGTCATCCCCAGAAATGAGTTTAATGACCCAATTTTGAAGAAAAACACAGCCGATAGTGTACCTTTGGA GCACATTACTCGCATCTTCCCTATTCTTAGCTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0320000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAAGAGAAAGAGAACAAGCACAGGTTGGTTACGCAGTGGAGCAGCTTCTTGCTCTCAATCCCTACAATCCTGACAT TCTTCCAGATCTCGAAAACTATGTCAATGACCAGGTTTCATCACAAACATACAGTCTGGATGCAAATCTGTGCCTTCTTC GTCTCTACCAGTTTGAACCAGAGAAAATGAGTTCCCAGATTGTAGCCCGCATATTGGTTAAGGCCCTCATGGCAATGCCA GCTCCTGACTTCAGTCTGTGTCTCTTTCTGATTCCTGAACGTGTGACAGGAAGGTTTCGGCAGTTTTGGGATGAAGCAGC AAAAAGTCGTCATATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAGAGCTATGCGGTTCATGTCATTTCCTTGA CTTACCAAAAGGTTCCTAGAACTGTGCTTGCTGAGGCTATCAACGTTGAAGGTTTATCCTTGGACAAATTCCTTGAACAC CAAGTTGCCAACTCTGGTTGGGCTATTGAGAAAAGCCAAGGCAAGGGTCAACTCATTGTCATCCCCAGAAATGAGTTTAA TGACCCAATTTTGAAGAAAAACACAGCCGATAGTGTACCTTTGGAGCACATTACTCGCATCTTCCCTATTCTTAGCTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0320000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGREREQAQVGYAVEQLLALNPYNPDILPDLENYVNDQVSSQTYSLDANLCLLRLYQFEPEKMSSQIVARILVKALMAMP APDFSLCLFLIPERVTGRFRQFWDEAAKSRHIVEAVPGFEQAIQSYAVHVISLTYQKVPRTVLAEAINVEGLSLDKFLEH QVANSGWAIEKSQGKGQLIVIPRNEFNDPILKKNTADSVPLEHITRIFPILS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13022:SF0
5 210 206 5.5E-69 –
PANTHER
PTHR13022
5 210 206 5.5E-69
IPR009374
Hamap
MF_03010
5 212 208 20.545
IPR009374
Gene3D
G3DSA:1.25.40.250
6 106 101 5.0E-29
IPR016020
SUPERFAMILY
SSF48371
10 114 105 8.63E-33
IPR016024
Pfam
PF10075
97 174 78 2.4E-6
IPR033464
Gene3D
G3DSA:1.10.10.10
108 210 103 1.7E-10
IPR036388
SUPERFAMILY
SSF46785
117 209 93 2.99E-17
IPR036390

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003743
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0005852
Cellular component Eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.
Subterm of
GO:0006446
Biological process Regulation of translational initiation Any process that modulates the frequency, rate or extent of translational initiation.
Subterm of
Regulates
GO:0043022
Molecular function Ribosome binding Interacting selectively and non-covalently with any part of a ribosome.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0320000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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