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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0326100 |
| Transcript ID | LotjaGi4g1v0326100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Growth-regulating factor-like protein; TAIR: AT3G13960.1 growth-regulating factor 5; Swiss-Prot: sp|Q6ZIK5|GRF4_ORYSJ Growth-regulating factor 4; TrEMBL-Plants: tr|V7CCG7|V7CCG7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0326100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70457915..70464203) extracted from Lotus japonicus Gifu genome v1.2.
GAGGTGGAGGAAGGTTTTAACCAGCGAAGGCATCGCAATGGGTATGTATGGTCTCTGCGGTTGGACAATAGAACATGTGA ATGTGGGCGCTTTCAAACATTCAAGTATCCATGTGACCACGCAATTGCTGCCTGTATGCATCAAAGTTTAGACTATTGGA GTTTGGTGGACCCTGTTTATACGCTTCAGAGCATATTGGACGCGTATCAAGGACAGTGGTATCCAATTGGCAATGATCTG AACATGCCACCAAGGGAAGGGGATCGAATTGTTCCAGATCCGTCCACGGCTAGGGCGAAGGGTCGTCCTAGGTCAACTCG AATAAGAAATGAGATGGACTTGACGGAGCCTCAATCGAGTCGAAGATCTGTTACGCTACAGAGATAGATGTTGTTCTTGT GTGTGAGGGATGTACTTGTGTTTGAGGGTTGTTTTTATATTTGGGTTGACCCTGTTTGTTGTGTGTTTGTTGAATTAAAC TAATGTTTTTCCATCATATTCATTAATTAACAAAAAACAGTACAATAGATCAATGATGAGTTCGATGGGATCCTGTTCCG CAATCAGGCCAAGGTGTGTCTCTCGCTACTCGATATGGCCTACCTTCCTGCTCTGCTTGGTTCTCATGTTGGCTACCTTG GCCATAAGAAAGTCCATGTTGGATGTTGGACTCATTGTCTCCTACTCCAGATGCTTGGTTCAAGTCAAACACAAAGCTAG CCTGTGCATTGCTGATCGCATCTGGGTTGGCAACATTCCAGAATGATGGTCGGGGATTCAACACGTCAGAAGCTCGGGGA ATTTCCAACACTTCACTTACACCACCGCCTCCCCATCCAGGTACAGGGCTCCATCCTTGGGGATCAATGTGCTGCATTTC CGGTGTCCTGAACTGGTCATAAATCGAATGAGGCTCCTCTTGAAAATATTGTTGTGACTGTGATTCACCAAACGGCATGT CCGGAATGTATGGCTGTGAGCCAGAATATGGTTGTGACTCCGGCATCTGCATCTGTGGCTCTTGGTAGTGTTGGGAACTA CCAGATGACCCTGACTCATTTGCAGGCTGTCTCGACCCACCACCAAAGTGGTATTGTCGGTATGAATCACCCTGATGTAG GGGATACAACGAGTACTCGCCCTCTCGAGGTGGTAGAGTACCTCCATGTATAGTCACATCCTGAGCATGCACCTCTTTCC AATACTTGCCCAAACCCTGTGCTTCTGCTCTTCCAACATGTGGTACGTATTCAATTGTGGGACGTGGTAAGTCCATAGGC ATGAGTTCAACTGACGCGGCAGGAACAGTAATCCTGTCCAGCTGGTGACATAAAGTAAGGCAACGCGCGGCTTGGCTTTG CATTTCCTCAGGTGTATACATACCGCGATCGACGTCAGAAAGTCCATACCACACATGTTGAATGTTTTCACCCTACATTA GTGAATAAATAAGAAAGTTAGTATTTCAAAATTTACAAACATAGGAACAAAGAGAAGCAAAGGTTATATAACATTACAAT TTGCCCTGTTGTCGAACTCTGACGCGTCAGCCAACGAATGGAATGTTGGGCGTACCACTTCATGTAACGGTCGTTAGGGC CAGCTAACGTATTAACCACGGGTTGCTGAACTATCCTTTGGTGTCTTTGCCCCCACACCTGTATAAAGGGCATCATGGCT GTAACCCAATCTTCCTGTTCCTTCCCCGCCAAAGTTATGTCATGCAGTTTATCAATTTGATATGGTGGGTCAGGTACCCC CTGAAACATGCCAAACTGTTGCAAGACTCTATCCGGTTGGTGCCACTCAACAAAGGTGTAGCATATCATTGGCACAACTG ATCTCCACAAGTGCATACTTTGCCAACACCGTTCCGGTAGCGAATTTATAACATGATCTGGGTATGGCCTCCAGACAAAC TACACATCCAAATTAGACGAAAAAAATTAAGAACATAAACATAAAATGATTGAGACAAGATATCAAAATAATATAATATT AGCGTAATATAATATTAGCATAACTAACTTACGTCTTCAGCTCTCAGTTCGTCGAGCTTGATCCGCCACAAATCAATTTG ATTCGTTTGACGACCAACGTCAACACGATTTGGGTTTCTTCCCCACCTGAAATAAAATTTAGGGTAAATTATTAACGGCT TATTTTGTCGCATTTATGTGAACAAATAAATATAACTTCTTGTAAATTACGTGCATACCTTCCTGCGATGGGGCAGCCGA TTTGCAATATCGGTATGATTTCAGGGGCAGTCATTGGAATCCTTTCCCAAGCCCAGATTTGGAGCAAATAAATACAACCA CCGATTTCTTGTCGTTCATAACCGGTTGCATGGCATAACTCATGATAGAGAGTTGCAAGCACAGCCGAACCCCAACTGTA CGTGGAGGCCAGAGCTAAATTCTCTATTAGTAGTAGATATCTTAGAGGCACATGTGATCCCGAGTGGTCGGGTAATAAGA AAGTGCCAATCAAGCGCAAAATGAATGCTCTTGCAGCAAATTCAGCTTCTGCCGGCCCAAGTGCACCTAGGTTTTGAAAA TCAAAACACTGGTTTAACCATCTCATGTTTAAACAACTTCCTCTAATAGCACGTCGCGGTGGAGTGACTCCTAGCGCACG AGTAACGAGATCAGACCAGTCACACCATGTCACCCCGGTAACAGGTTGCCCATCAATATTTAGTCCCAGCTGAACGACAA CATCTTGAAGAGTGATGGTGCACTCTCCAAACGGCATATGAAAGGTGTGCGTCTCGGGCCGCCAACGCTCCACCAATGCG GATATCAACACTTTGTCTTGTTTGAGAGAACCACATAGAGCGACCTCGTAAAATCCGGCCAATCGAACGTATTGTTCGAT TTGTGGAGGGACACCATCCAAAGGAATGTGGGGTAATCTCAGCTTCAAGACTTTCTTACTTGTTTGGTTCCAAACATATC CCGACACATGTTTGTTTTGTTTCACCAACAACGTCGGATTTTTTGGACCGAGACTTAGCACTGCTTCATCCGCCATTTAC AAAACCTTCATGAAGTAATAACATGCAACCGAAAATTAGGCATCAAAGAAAGTTTGAGACTCAAAAACAAATGATAAACT ATAATATTTGAAAGGTTAGAATGAGAGATAGAGTTAGAAATAATTACCAACAATATAGAGACTTTTACACTTGAGAGAGT TTGAGGGTAGGTAGAGCTTGAGAGGTATCAAACTTATCACTTGAGAGTTCAGAAATGAGGCTTGAAAGTTGAGAATTGAG AGAGTTGGAGAGGTGAAGTTGAGAAATGAGGCTTGAAAGAAATGAGGCTTCAACATTTCTGGGGGTCTTTTTATAGGGGT TTCAGACCGCCAGAAATGCAGAACATAGCCAACAAGCCATTCGCGAGGTCAAGTGCGAATGCCTGTGCATGCTTTGATCG TGGCCGACAAGCTATTCGCGTGGCAGGCTACGAAAGCCTCTGCATGCCTCTGCATGCCTGCAAGCTCTGCTACGTCCCAT CCAATGACAGCCATTCGCGAGCTTTGTTGCGAATGCCCCTTGTTCCTCAGTCAAACTGCATCGGGAAGGAGGAGAATCTC TCCTGGTGCACCTGATTCTCCTTGTCTTATTAGGATTCGCAAGGTTTCCTACGAATGGTACCTGGTCAACCTGACTTCAT GTCATTCAGTTCTGGAAAAGTTGTTTGTCCTATTAGGATTCGCATGGAATCTCTCGAATGCTAAAAGAAAACTACCCCAG ACAGCTAATTTTGTTTTTTTTCACCCCCTTTCTCCAATTAATATTTTCTTTCACGCCATTCAGAAAAAAAAAAGCCCTTA AACCGTACAATCTTCTCAGACACAGGCATTGGCTTCAGATTCAGACACCAACTCTCTCAAATAGTTTCATACACAACAAT TCCAATAATAACTATTTCCTCTTTTGTCTTTAGGTGCTCTTTTTTTCTCTCTCTCTTCTAGTTTATGGATTTCCGTAAAG ATGTCAGATAACGCCAGATGCCAGAGAAGCAGCTGCAGCAGCTGCAGCAGCAACAGAGAGCCAGAGCAGCAGGTGCAGTC ATAATAATAGATACAGAGTCAGAGATAGATAGAGAGATAGAGTGAGAAAAATAAAATTTCAGAGCATTGGCATGCAGCTC TGTAATCAGAACCATTAGTTCATCAGAAGATTCTGTAACAACACAATGGTCCCTGAAATAAATATACCTACTCCTCCTCT CCTCTATCCCATTTCCAAGTCCTCTATCCCATTTCCAAGTGATAATAAACATTGAACCTGCTCTGTTTCATTTTACTACT ATCACCATCTATCACTTCATTTCTCTGCCTCCTTCAAGTTCATTTCTCTTCTTCTTTCTTCTCTTTCACTCTGCTTGATG ATGAATGGTTCAAGGAACAGGTTCCCTTTTACTTCTTCTCAGTGGCAAGAGCTTGAACATCAAGCTCTTATCTACAAGTA CATGGCTTCTGGTATTTCTATTCCACCTGATCTTCTCTTCACCATCAAGAGAAGCTACTTGGACTCTCCTCTGACTTCAA GGCTTTTGCCTCACCAGTCTCAACACTGTAAGTTCCATTCCACGCCAACTGTTTGGGTTTTTGGATGGAACAGTTTTGTT TGATTTGAGTGAACTAGTTTTGTTTGAGTTTGTATGATTTGATTCTTTCTTGTTCTTCATGCAGTTGGTTGGAACTATTT GCCTATGGGTTTGGGGAGAAAAATAGACCCAGAGCCAGGGAGGTGCAGAAGAACTGATGGCAAGAAATGGAGGTGCTCCA AAGAAGCTTACCCAGATTCAAAGTACTGTGAGAGGCACATGCATAGAGGGAAGAACCGTTCAAGAAAGCCTGTGGAAGTT TTGAAAACAACACCAACAACAGCAATAGATGCAGGAGATGCTTCAGCAGCACCAACAACAATGTTATCTATCACAAAAAA TAGTCCTGCACTCACCCCAACAACCACTCATGACCCTTACCATCACCACCATCACCCTCAAAACTCTTCCTATGGCTCAT CTTCTTCCCATCTTCAGCACCCTTTCCTCTACCATCATTCCCCACCTTCAAGGCCTTCTGGTGTTGGTTTGTCTTTTCAA GACAACAACAGTGCTCCTATGTTTCTTGACACTGGTTCTTGCTCTCACAATAACAACACTGATTGCAGGTTCTTCTTCTG AAAACCAGCACATGATTAAATAGTTTAAAACTTTCCTTCTTTCAAGTTTTTGTGATCAAATTTCAATTTTTTTGTCTTAT TTATTTCCTTCTAGCAGGTATGTTTATGGACTGAAAGAAGAGGTGGATGAGCATGCTTTCTTCACTGAACCTTCTGGAAC CATGAGAAGCTTCTCTGCTTCCTCCATTGATGATCCTTGGCAGCTCACACCACTGACTATAAGCTCCTCATCCTCTTCAA AACAGAGGAACTGCTCTGGTTTATCCAATTCCAATGACACCAACAACAACAACGAGTACTCTTACTTGCAACTTCAGAGC CTCAGTGACAACTCAAAGCAAACACATCAAGATCATGGTTTCTATAGTGATAACAAGCCTGAAAATTTCATGAAACTTGG GAAAGAAGAACCTCAGAAGACAGTTCATCGCTTCTTTGATGAATGGCCCCCCAAAAGCAGAGGATCATGGCTTGATTTGG ATGATAAATCATCCACCACCCAGCTTTCAATTTCCATTCCCACATCTTCCCATGATTTCACAACTTTCAGTTCCTCAACC CCACGAGGTAACTTCAGTAACTCCCTCAGATTCCACCTTTTCATGATTGTTTCTTCCTGTATAATTGAAGATTTCTCTGT AACTTGCATTTGATTTTTGCAGATGGTTGAGCTCAGCTTTCAGTAGTGGGGGTCCCTGGTCCCAGAACTTGAATCAAAGG CCAAGAATGTACTTACATGGTGGGGTTCATGTTCTGTGAGGATTTTTGACTTTTTTCCCTTGAGTTGTTCCCCTTTTCCC ATCTGTTTTGTAATTGTTGTTCAAGTGGATTTGTGTCTCCGTGGAGGGATCCAATGTGTGTAGTTGTGTGTTTGTATGCT ATTGCTTTCAAAATTTTGTTCTTTCTGCCAAGCATAGTTTTCAGTCTCTTCCAGTGACTCCACCCCATGTCTATTTTTTT GCTTTGAGCTAACATTCAAGGACATGTACGTTTTGGCTAATTCATCCTTTTCTCTGCTTCTGGTTTTGCTTGTTTGTCAC TTACTTCTCACCTTCCAAAAGTAGAACACTCATTGAATCATATTCAAAG
CDS sequence (LotjaGi4g1v0326100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAATGGTTCAAGGAACAGGTTCCCTTTTACTTCTTCTCAGTGGCAAGAGCTTGAACATCAAGCTCTTATCTACAA GTACATGGCTTCTGGTATTTCTATTCCACCTGATCTTCTCTTCACCATCAAGAGAAGCTACTTGGACTCTCCTCTGACTT CAAGGCTTTTGCCTCACCAGTCTCAACACTTTGGTTGGAACTATTTGCCTATGGGTTTGGGGAGAAAAATAGACCCAGAG CCAGGGAGGTGCAGAAGAACTGATGGCAAGAAATGGAGGTGCTCCAAAGAAGCTTACCCAGATTCAAAGTACTGTGAGAG GCACATGCATAGAGGGAAGAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAACAACAGCAATAGATGCAG GAGATGCTTCAGCAGCACCAACAACAATGTTATCTATCACAAAAAATAGTCCTGCACTCACCCCAACAACCACTCATGAC CCTTACCATCACCACCATCACCCTCAAAACTCTTCCTATGGCTCATCTTCTTCCCATCTTCAGCACCCTTTCCTCTACCA TCATTCCCCACCTTCAAGGCCTTCTGGTGTTGGTTTGTCTTTTCAAGACAACAACAGTGCTCCTATGTTTCTTGACACTG GTTCTTGCTCTCACAATAACAACACTGATTGCAGGTATGTTTATGGACTGAAAGAAGAGGTGGATGAGCATGCTTTCTTC ACTGAACCTTCTGGAACCATGAGAAGCTTCTCTGCTTCCTCCATTGATGATCCTTGGCAGCTCACACCACTGACTATAAG CTCCTCATCCTCTTCAAAACAGAGGAACTGCTCTGGTTTATCCAATTCCAATGACACCAACAACAACAACGAGTACTCTT ACTTGCAACTTCAGAGCCTCAGTGACAACTCAAAGCAAACACATCAAGATCATGGTTTCTATAGTGATAACAAGCCTGAA AATTTCATGAAACTTGGGAAAGAAGAACCTCAGAAGACAGTTCATCGCTTCTTTGATGAATGGCCCCCCAAAAGCAGAGG ATCATGGCTTGATTTGGATGATAAATCATCCACCACCCAGCTTTCAATTTCCATTCCCACATCTTCCCATGATTTCACAA CTTTCAGTTCCTCAACCCCACGAGATGGTTGA
Protein sequence (LotjaGi4g1v0326100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMNGSRNRFPFTSSQWQELEHQALIYKYMASGISIPPDLLFTIKRSYLDSPLTSRLLPHQSQHFGWNYLPMGLGRKIDPE PGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTTAIDAGDASAAPTTMLSITKNSPALTPTTTHD PYHHHHHPQNSSYGSSSSHLQHPFLYHHSPPSRPSGVGLSFQDNNSAPMFLDTGSCSHNNNTDCRYVYGLKEEVDEHAFF TEPSGTMRSFSASSIDDPWQLTPLTISSSSSSKQRNCSGLSNSNDTNNNNEYSYLQLQSLSDNSKQTHQDHGFYSDNKPE NFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSSHDFTTFSSSTPRDG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 371 | 369 | 2.7E-100 | – | |
| PANTHER | 3 | 371 | 369 | 2.7E-100 | ||
| SMART | 9 | 45 | 37 | 1.9E-10 | ||
| ProSiteProfiles | 10 | 45 | 36 | 21.632 | ||
| Pfam | 10 | 43 | 34 | 4.3E-14 | ||
| ProSiteProfiles | 78 | 122 | 45 | 24.98 | ||
| Pfam | 79 | 121 | 43 | 8.0E-21 | ||
| MobiDBLite | 148 | 198 | 51 | - | – | |
| MobiDBLite | 168 | 183 | 16 | - | – | |
| MobiDBLite | 263 | 290 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Developmental process | A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. |
Expression pattern of LotjaGi4g1v0326100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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