Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0328100 |
| Transcript ID | LotjaGi4g1v0328100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD40 repeat-like protein; TAIR: AT4G29830.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9SZQ5|VIP3_ARATH WD repeat-containing protein VIP3; TrEMBL-Plants: tr|I1MSD9|I1MSD9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0328100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70651652..70657640) extracted from Lotus japonicus Gifu genome v1.2.
AGGGAGCTTCTATGTGAATGGGCCTAAAAGAGAAAGGCCCATACAAGCCAACCATAGTTGAAAACGGGCGTAGCAGAAAG CGCAACAGAGCACTGAGCATTGAGCACTAAGCAGAGCGGAGAACAATGAAACTGGGTGGACTCAAATCGGTGGAGAACGC GCACGACGACTCCGTGTGGGCAGTCACATGGGCACCCGCAACCGCCAATCGCCCTCCGCTCCTCCTCACCGGTTCTCTTG ACGAGACCGTCAGGCTCTGGAGGTCCGACGAGCTTGTCCTCGAACGCACCAACACCGGCCACTGCCTCGGCGTCGCTTCC GTCGCCGCTCACCCCCTCGGCTCCATCGCCGCCTCCTCTTCCCTCGACAGCTTCGTTCGCGTCTTCGATGTTGATTCCAA CGCTACCCTCGCCACCCTCGAGGCTCCACCCTCTGAAGTATGGCAAATGCGTTTCGATCCCAAGGTATGGAATATCGACC TCCCTTCTTTACTTACTGCACATGGGCACAGAGTATTGAAACTTGATAGCATTCTAGAATTTATACCTTTTTTTTTTTCT CAAGAGTTTCGTTCATTGTGTGCTGAAACCTAGAACAGTGAAAATTCATGTGTGACTAACCCTAATAGTATGAATTGTAT GTGTGTCTATTATCCTTGATTGGTCGAATAAGCCGATATGCTAAACCGTGCAATTCTAGTAAGAACTTTGATGACATATA TTTTGAGAACCCTAATGGAAAGAAAGACTGTCTGCTGAAAATCAGGACTCAACTTATTTACAATTGAGCCAAATGCTTGG TGCTTTGGTTGGTAACAGGTATGAGGGTATCGGTAGGCGTATGGGATTGACTTTTCAAAAATAACAATTGAGTGTTCTTT AGGAATTTCGCGGGTACTTCATAGGTACTTCTTAGATACTTGTACATCCAAAATTGGGTCGTTTTGTTGAGATACTTTAG GTATTTTTCTTATTCAAACCTAATTCTTAAACGGCTATTTTTCTTATTCAAACCTAATTCTTAAACGGCCAAAACTTAAA GCCTCTGCCGCCGCACTATATCCTCTGTTTCACACACACACCCAAATGCCACTAACCTCAGCTTCCGTCAAGGTATGTTG TTACTTGCTTTACTTTTAAGACCTGCAACGCTTATGCAATATTTTGGCCATCCAAGACAGAACTATTTTTTTTTAGTTTT ATCTAAATGGTCTAAGCGTAGGTTCAAGAGATATTTCGGCATACAATCAAACGGCAATTCAAACATGAAGGCATTGAATT CAATGATACCGGCCCAGCTTCTACTGGTTTTTATATTGACCTGCATAGCTTTTCAATTTCTACTCTTTTTCTATCATTCA CACCCACGCCACCATATCTATACTTTAGTTTTTACAAAACCTCGTACCCGGTACAATAACTGTATCGGTGTATCCATGCA AGTTCATAACATATATATCAACGTTGGATCACTGCACGGAGCTGTTGGCTCTAAAATCTCGATATAAATACAAGATATAT AAAGTATACAGCGGAGATGATAGTTCATTTGCTTTTCCTCAAACAGAAACCTAATATTACATTTAAGAAGGCAACTCAGG AAAAAAAAACTAACAAACAATGGCTCCAATAACCCATATGACAAGGGGTAAATACAGATTTTTCCCTTGTGAAGAATAGC AGCGGTGATTCCTTGTGTTGAGGCTGCAATAGCTGCTGCCATTGCCTCTATTATTAAATGCAGTGCTATTGAAGTCATTT AGCCGCCACAGGCTGCCCCATTGCTATACTGTGCTGTTAAGTATTAACAACTGTGACTCACAAGTTCTTAATCAACATGT AATATTATTATTCTGACATGAGTGCTTCTTTTTTCTGGAGAAAGGGTTTTACTTCCTACTCACCCTTTTGTGGATGGCCC TAACGAGGCTGAGACAAATAGAAACTGACTTTAAGTACAAGTGCTTTCACATAGCATGTTTATTGAAATTTCCATTTTCC CCCCTGTATTGGTAATTTTGCATACTTAAAATCTTAATTACATGAAGTTGATTGGTTAATTTTAAGTTTTCCACAGTTGT CAATTATATTGATCAAATGTGAGTTTGTATTTGTTTATTTTCTGATATTGTATGAATGCAACTTCTGATCTCTTACCCTT TTTACTACTATCATATTCTATGATGCTAAGTTTATATAATTTGGCCATTCACAATAATTTTGAAGTTTGCAAATGTTTGA CTATAAAATATTTTTCAAAGTATCTATCTTCCACAGCTCTTTTGGATACTCTGTTTTTGAGATTTTAGTAAGTATGTCGT TTTCTTTTTCTTTCACCATTGCATAGGATATTTGGTGCACCCTCAATAACGGTGAACATTTCAGGGACGTGTGCTGTGAA AATGGTACTAGAAAACTCATTGTTAATGTACACTTTTACCTGTCCCATTATATCTTTGCAGCATAGCAGATATCATCCAT TGCCTTGAATTTTTTATGATACTAGTAAACACGAGCATTTCATCCAGAGTCTATTATTTTATCATTTTAAGTTTTTAACC ACATACTGTGGTGGATTAATCAACAAAAGTTCTCTACCTTCAGGGTGCCCTTCTAGCAGTGGCTGGTGGAGGCAGTGCAT CAGTGAAGCTTTGGGACACCTCCACATGGGAGCTTGTTGCCACCCTCTCAATTCCTCGTCCAGAAGGAGGATCCAAACCC ACAGACAAAAGTGGCAGCAAGAAATTTGTCCTGTCAGTTGCATGGAGCCCTGACGGGAAACGAATTGCTTGCGGTTCAAT GGATGGCACTATTTCAGTTTTTGATGTGCAACGGGCTAAGTTTTTACATCACCTTGAAGGCCACTTCATGCCTGTTCGTT CTCTCGTCTACTCTCCTTATGATCCAAGGCTGCTCTTTACAGCCTCTGATGATGGCAATGTCCACATGTATGATGCTGAG GGGAAAGCTCTAGTTGGGACCATGTCAGGTCATGCTAGCTGGGTATTATGTGTGGATGTGAGCCCAGATGGAGGTGCCAT TGCCACCGGTTCAAGTGACAGAACTGTTAGGCTATGGGATCTTGCCATGAGAGCTTCTGTGCAGACAATGAGCAACCACA CAGACCAGGTTTGGGGAGTGGCATTTAGACCACCTGGAGGGACTGATGTTCGAGGTGGCAGGCTTGCTAGTGTTTCAGAT GATAAGAGCATATCCCTGTATGATTATTCCTGATCCTAATTTAGACATTGCACCCAATGTTTGTACTTTGTACCTTGGTT TTCTTTTCGTGGAATGTTATAAACTTTTTGATGCTTTCCCTATCCGTTGTGATTCCGTATCCATGATTTGTTGCTAGAAA AGGTCATTACATTTAAGAATTGAACTTTGTTATTGACAATTGGAAATACTGGACAAATCTGTCAAAATATTGTGCGATCA AATATTGTTTCGGCTCAAAATCTGTCCAAAATCGTTGACTAGGAAGATTGCAGCAAAATTACGAGCTGACAGGTGTTATT TGTTGGATTTTCAATTTTGTATTAGTTACACAGGCAGGCGTATGATAAAAGCATAAAATCTCTCTTATTATTATAAGGTT AAGAATTTCGCATCGGCCAGCATGCCAATATTTTATACAGGCATGGCATCATCAATTTTCCACCGTGTATCCTACGAAAG CTTTTCCCTAGGTCAAACTGAAGCATATGATGATGTTCCAAAAAACACATGTTTTCTCCATTGTTGGATCACTCTAGGCG GCACACAAAATAAAAACATTCAAGTCCGAGACATCTGTTTAAACTAGAATAATCTAATGCAAATTCATCTCCACATTTGG CGGTATATCTGCTGCTACATTTTAAAGCATTTAGAATCTCTTGTCCAAGTAACCACCGGTTTATTCAAGCAAGACTCTCA GTTGGTGTTTATTAGTCAAACATAAACAAAACTGTGAAATTAAAATTTAAAAATCAAAGCACAAGAAGACAAATGCTAAA CTAGCTTCACTCATACTTTTGGCGCCTTGCTCAAAAAATCCTTAAGCACATCCATAACCGCTCCAAAATCCGCTTTCACA GTAACAGGTGGGTTAGAAAACCGACCCAAACCCGGAATAGCCTTAGAGTGATAATCAATCTTGCTCTGTGTAAACTTCAA CCCATGCGCGGTGCTCACCACCACCGCCCTATCACCCGCCGCAATCACCCCGGAGTTTCTCAGCTTCGTCAGTGCCGTCA AAGCCACCCCAGTATGCGGGCAAATAAACATCCCAGTCGAATCCGCCAACGCCATCGCATCCATCAGCTCCTCCTCCGTC GCCTCCTCCACAATCCCACCACAACTCTTCAGCGCATGCACCGCCCTGTCAATCGAAACCGGGTCACCAATCTGAATCGC CGAAGCGAATGTGGTTTCCGCCTTAATCGCCTTGAACTCCTTCCACCCAGATTTGTAGTATCGATACAGAGGATTCGCAT TCGCCGCCTGAGCACAAACCAGTCGAGGAATCTTCTCCACGAGGCCGAGATCCTTGCACATCTTGAACCCCTTGTAGAAG GCGTAGATGTTGCCGAGGTTCCCGCCGGGAACGATCACCCAATCAGGAACCTCCCAGTTGAACTGCTGAAGAATCTCAAT GGCGGCGGTTTTCTGCCCCTCGATTCTCAAGCTGTTGAGCGAGTTCGCGAGGTAGATTGGAAGCTCGGCGGTGATTTCCC GGATTAATTTCATGCAGCCGTCGAAGTCGGTGGCGATGCTGAGAACCAGAGCGCCGTTGGAAACAGGTTGAATCAGCTGC GCGGTGGAGATCTTGTTGTCCGGGAGGAAGACAATGGATGGGATTCCCGCGGCGGCGCAGTAGGCGGAGAGCGCGGCGGA TGTGTCGCCGGTGGAGGCGCACCCGACGCCGACGAGGGGACGGTTCATTCTACGGAGGCGGTTTACTTGGCTGACGAGAA CCGTCATGCCGAGATCCTTGAAGCTTCCGGTGTGGCTGATGCCGCAGTGTTTCACCCAGAGGTCGTTCATGCCGAGATAC TGTTTCCCGTATCGCTCCGCCCAGAAGAGGTTGGAGTTTCCCTCGAAGGCGGAGACGATGTCGTCGGGGTGAATCTCCGG GAGGACCCACTCCTTCTTGCTCCAGACACCAGAACCATACGGCCACGTCGTCTTCCCCACGCGCGAGTCGAAGAGGTTCC GCCAGTACGCACCGTCGAACCTTCCCAACGCCTCCATATCATGCTGGACATCAAGCAACCCGCCGGAGTTGCTCCGGTAG ACGATCTCATCGAGAGAGTATGACTCCGGGGAGTCGAAGCCGGCATTGAAGGGGACGTACTTGGCGGTGAAGTTGTCCTT ATCAGCGGAGCGGTGGCGGCGCGCTTCTTCCTCCTTGATACTCTCCGGCGGTTGATGGTGGCTGTTGCTGGAGGCGGCGC GAATTACGACGGTGGAGGGGAAGCGGGTGTTTCTAGTGGCGGTTGAATGGATTGGTGTTGCATTTGGAATAACGAAAGAG GGATTGAACAACGAAGAGAGCATTTTTTTTTTTTTTTGCGTTATCTTGTTTTTAATCCTCTGAGAATTTGAGAAGAGGAG TTGTGTGGTTCACGTTATTTATTTTGTTTTCTTGATATCTCAAAAGAGTTTCATCAATGGTAATGGTGGTAACCCACAAA ACTAGGGTGGAAACACGTGCGGTTTAATTATCCCCAAACGTTGAAATTAAGATTCTGATGCTTATGGAAACAAACATATC TTTTCAGACTCCAATTAGAGTTATACTTATAGAGAGATTATACAGAGATTGGAAGATAAACATAAGATAAGATGTATGAT AAGATAAGTTGTGTAATACGATAGAAAAAGAAAAAAGATAGAGGTAGAAAGATTGTATGTGAATTCTAATGAGATAGAAG ATAAAATTATGTGTGAATGAAGTTCGAATCAATCATTCTATCGCATATTCGCATGTGTCTAGACTAGAG
CDS sequence (LotjaGi4g1v0328100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACTGGGTGGACTCAAATCGGTGGAGAACGCGCACGACGACTCCGTGTGGGCAGTCACATGGGCACCCGCAACCGC CAATCGCCCTCCGCTCCTCCTCACCGGTTCTCTTGACGAGACCGTCAGGCTCTGGAGGTCCGACGAGCTTGTCCTCGAAC GCACCAACACCGGCCACTGCCTCGGCGTCGCTTCCGTCGCCGCTCACCCCCTCGGCTCCATCGCCGCCTCCTCTTCCCTC GACAGCTTCGTTCGCGTCTTCGATGTTGATTCCAACGCTACCCTCGCCACCCTCGAGGCTCCACCCTCTGAAGTATGGCA AATGCGTTTCGATCCCAAGGGTGCCCTTCTAGCAGTGGCTGGTGGAGGCAGTGCATCAGTGAAGCTTTGGGACACCTCCA CATGGGAGCTTGTTGCCACCCTCTCAATTCCTCGTCCAGAAGGAGGATCCAAACCCACAGACAAAAGTGGCAGCAAGAAA TTTGTCCTGTCAGTTGCATGGAGCCCTGACGGGAAACGAATTGCTTGCGGTTCAATGGATGGCACTATTTCAGTTTTTGA TGTGCAACGGGCTAAGTTTTTACATCACCTTGAAGGCCACTTCATGCCTGTTCGTTCTCTCGTCTACTCTCCTTATGATC CAAGGCTGCTCTTTACAGCCTCTGATGATGGCAATGTCCACATGTATGATGCTGAGGGGAAAGCTCTAGTTGGGACCATG TCAGGTCATGCTAGCTGGGTATTATGTGTGGATGTGAGCCCAGATGGAGGTGCCATTGCCACCGGTTCAAGTGACAGAAC TGTTAGGCTATGGGATCTTGCCATGAGAGCTTCTGTGCAGACAATGAGCAACCACACAGACCAGGTTTGGGGAGTGGCAT TTAGACCACCTGGAGGGACTGATGTTCGAGGTGGCAGGCTTGCTAGTGTTTCAGATGATAAGAGCATATCCCTGTATGAT TATTCCTGA
Protein sequence (LotjaGi4g1v0328100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLGGLKSVENAHDDSVWAVTWAPATANRPPLLLTGSLDETVRLWRSDELVLERTNTGHCLGVASVAAHPLGSIAASSSL DSFVRVFDVDSNATLATLEAPPSEVWQMRFDPKGALLAVAGGGSASVKLWDTSTWELVATLSIPRPEGGSKPTDKSGSKK FVLSVAWSPDGKRIACGSMDGTISVFDVQRAKFLHHLEGHFMPVRSLVYSPYDPRLLFTASDDGNVHMYDAEGKALVGTM SGHASWVLCVDVSPDGGAIATGSSDRTVRLWDLAMRASVQTMSNHTDQVWGVAFRPPGGTDVRGGRLASVSDDKSISLYD YS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 322 | 322 | 5.3E-154 | – | |
| PANTHER | 1 | 322 | 322 | 5.3E-154 | – | |
| SMART | 3 | 46 | 44 | 0.01 | ||
| Gene3D | 5 | 322 | 318 | 1.4E-90 | ||
| CDD | 6 | 320 | 315 | 1.03647E-67 | – | |
| ProSiteProfiles | 10 | 45 | 36 | 10.609 | ||
| ProSiteProfiles | 10 | 322 | 313 | 52.598 | ||
| SUPERFAMILY | 11 | 318 | 308 | 4.58E-65 | ||
| Pfam | 12 | 45 | 34 | 0.041 | ||
| PRINTS | 33 | 47 | 15 | 1.7E-6 | ||
| SMART | 49 | 88 | 40 | 0.0023 | ||
| ProSiteProfiles | 56 | 97 | 42 | 9.84 | ||
| SMART | 91 | 131 | 41 | 0.0034 | ||
| Pfam | 95 | 131 | 37 | 0.066 | ||
| SMART | 134 | 187 | 54 | 3.8E-7 | ||
| ProSiteProfiles | 155 | 196 | 42 | 11.177 | ||
| Pfam | 156 | 200 | 45 | 3.9E-6 | ||
| PRINTS | 174 | 188 | 15 | 1.7E-6 | ||
| SMART | 190 | 230 | 41 | 9.6E-7 | ||
| ProSiteProfiles | 197 | 239 | 43 | 10.007 | ||
| SMART | 233 | 272 | 40 | 6.0E-11 | ||
| Pfam | 236 | 272 | 37 | 5.3E-9 | ||
| ProSiteProfiles | 240 | 281 | 42 | 16.824 | ||
| PRINTS | 259 | 273 | 15 | 1.7E-6 | ||
| ProSitePatterns | 259 | 273 | 15 | - | ||
| SMART | 275 | 320 | 46 | 3.6E-5 | ||
| ProSiteProfiles | 282 | 322 | 41 | 8.771 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0328100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…