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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0334000 |
| Transcript ID | LotjaGi4g1v0334000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carboxypeptidase; TAIR: AT3G17180.1 serine carboxypeptidase-like 33; Swiss-Prot: sp|Q9LSM9|SCP33_ARATH Serine carboxypeptidase-like 33; TrEMBL-Plants: tr|I1KMN0|I1KMN0_SOYBN Carboxypeptidase; Found in the gene: LotjaGi4g1v0334000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71296442..71300226) extracted from Lotus japonicus Gifu genome v1.2.
CTTATGTTTGTGGCCTTCTTGTGTGGGTAAGCCCAACTCCAAGTGTACCACAATTTCAAGTGCTCTCCAAGCCACTACTT TCAAGCACTATAAGAGTGTACCAAATGTAATGTTTTGGCCAAAGATATTCATTGTAGCAGCAAATATGAATATGAATGTT ATTCTTTCTGTCCACTTCCTATGTTTCTTTCTTTTAACTACATCATTCATTAAAACATATGGAATAAATGTTGGAGCCAA TGAATCTGATAGAATAGTTGATCTTCCTGGGGTACCTTCAAGCCCCTCAGTCTCACACTTTTCAGGTTACATCACGGTCA ATGAAGACCATGGGAGGGCCCTTTTCTATTGGTTTTTCGAAGCTCAATCCGAACCGTCCAAGAAGCCTCTCCTTCTCTGG CTCAATGGAGGTATGTGATTATCTATTTGTTGAATCACATGTCACATGTTAGCAACTATTCTCATACTATTATTCAGTTT TTATTTTTTCTGCAAGGTAACAAATTGAGATATGGTTATATTACTTATATACTGATACCATTTCATTTTATTGGTTTGAC TCTGAAGGACCTGGATGCTCCTCTGTTGGGTATGGTGCAGCTATTGAGATAGGGCCTCTTTTAGTCAACAAAAATGGTGA AGGACTAAATTTCAACCCATACTCATGGAATCAAGGTTCATATTTTCTTTCCATCTTTGGACTGTAGAGTATACTATTTG ACTATTTCAATATTGAATAATCCATTTTGCTTACTTGGGAATTTTTGAAACTCTGCAGAAGCAAATTTGTTATTTGTAGA GTCCCCTGTTGGAGTTGGTTTTTCTTACACCAACACCTCTTCTGATCTCACCATATTAGAGGATAATTTTGTTGGTGAGT TCCCACTTTGTAGAAGATGAATAAAATCCATCTGATTTCATTGATCAATTAAAGCCAACCATATTTGACAAATTAACTTC TTGTTCTTGAACTAGCTGAGGATGCCTACAATTTCTTGGTGAATTGGCTACAAAGATTCCCACAGTTCAAATCCAGGGGC TTTTTTATTTCAGGAGAAAGCTATGGTGGTTAGTGTTTAACTTCATGTTTGGAAAGTGGAAACTCTCCTACAATTGATTC CGAAGACAGAATCAATTCTAAGGAGAAGTTTTCTGTGAGTAACTGCTAAGTTTTAGAATTGATTCTGATGAAAGGGAAGC TAATCCAAACCTGCTATAAGTATGATCTCTTTTTTCCACACACACACACTACTAACCATATTTTAACTGTCCCCATTTTT CAGGACACTACATTCCTCAGCTTGCAGAGTTAATCTTTGATAGGAACAAAGATAAAAATAAATACCCCTTTATCAATCTT AAAGGCTTTATAGTAAGTAAATCCTCCCTTACCAAGAAAAGGGTAAAATTAGAACATTGCCTCATATACTTTATATCTCC AGGTAGGGAATCCAGAAACTGAAGATTATTATGACTATAAAGGTTTGCTGGAATATGCATGGAGCCATGCAGTTATATCA GATCAGCAATATGACAAAGCAAAACAAGTGTGTGATTTCAAACAATTTCAATGGTCTAATGAATGCAATAAGGCCATGAA TGAAGTCTTTCAAGATTACTCAGAAATTGACATATACAACATTTATGCCCCGAAATGTCGTCTAAATAGCACATCCGCAA TTGCTAGTGAGGGCCTTGAACAACTTACAAAGGTAGATAATTAATGTAAAAAATCTAGAACTTTTAGATTATGATAACTA GTTTCATATGAAGTGGTTGAATATGAGGTGAAATTTTGTTGTTGCAGGGGAGGAATGATTATAGAATGAAGAGGAAGAGA ATATTTGGGGGCTATGATCCGTGTTATTCAACATATGCAGAAAAATACTTCAATAGGATAGATGTTCAATCATCTTTTCA TGTAAATACTGAAAGAGGAAACACTAATATCACATGGGAGGTTTGCAAGTAAGCACTTAGACCTTGATCCCTTTATTGAT ATATAGGTAAAATCACCATAGTTTAGGTGGCCCAATAATATTTTAGCATGTGTCTCGGAAATTTCAGTTCATGGCACGTG TCAAAATAGTCACCCAAGGCTAGGTGATTTTACTTCATATTTACTTGACAAGTGCTTTTTTTTCATGCTGATTATTGAAT ATTAACTTTCATGTCTCGTTTCACAGTAATTCCATATTGCAGACTTACAACTTCTCTGTCTTCTCCATCCTACCCATTTA CACCAAACTCATCAAGGGTGGGCTTAAAATATGGATTTATAGGTATTTCTGAGTAATTTTTATTTGTGAAAGTATCATTT ATTATTTATAGCATGTTTTCTTTCACTATAAAATTAAGACACTTTTACTCAGAAGCTAAAAGTAATTGTAGAACATTTTA CCACAAAACCAAACATGTTGTTAGTGATCATAGGTTTTATAATTGAGTTATATATACATCTAGTGTTAGAAGGAGCCAAT GGGTGAAAAGCAGAATTACTTGATTTTGGGGAAAGGATCATGTACTGATAATCATGTGCAGTGTGTGTGCAGTGGTTGCA ACTTGCAATGGTGTCCTTTACCGTGAATCAGATCACTTTTTGGAATCATCATTTTGATATCATGAGTTGCATTATTAGTA AGGTGTTGTTTGTTTGTGACTTTGTGGTGCAGTGGAGATGCAGATGGCAGAGTACCAGTGATAGGGACACGATACTGCGT TGAGGCTCTTGGATTGCCTCTTAAGTCAAGTTGGCGCTCTTGGTACCTCGATAATCAGGTTCACATGTTCATCTTCAAGT GCATATTTGGATACACGAAAATCATAATAAAGTTAAAATCAAATTAGACAACCATAAAAACTAAAAGAAATTGCTTTTGT CCATTATAATTTCGGCTGAACGTGATTTTCCACTATATATCAGCATGCACCTAATTTAAAAATTCTTCTATAATGATTGA TGTTAAAGTTAGAATTGGGAGAAGTTTTCAAAAATTAATCATTGTGATTTAATCAACTTTATAATATCATATATACACAT GTATATGATCACAGTTGTTGGTTTTCAACTTAATTAACTAAAACTGCTAACTTTATTTTTTAAAGTGTCTTTCTTCATTT TGGTAAAGACAAAATCAAACATTAGATACAAAAATTTGTTTTCAATAATTAAAACACATTTTACTTTTAAAATTAATAGT CTTATTAATGCATGCAGGTTGGAGGAAGGATAGTGGAGTATGAGGGTTTGACATACGTTACAGTGAGAGGAGCTGGTCAT TTGGTGCCTCTAAACAAGCCCAAGGAGGCTCTTTCTCTTATTCATTCTTTCCTGGCCGGCGACCGCCTTCCTACTCGTCG TTGATCACTCCTCTCCATGTACACCGATCATTTTTAGTACTACAGGAGTACTGAAAATTTGCTCTGCCTCCTGGGTTTGC AATTTTTCTCAAAAAGAATGAAATTCTGGTGTATATCATCAATATATTTAATAAATGAAAAGTAATAATGTGAGAGGAAT GATGTATCCATGAAATCAAGGTGTTAATTAGTTTCAAATGATCATTATCAAAGATTAATCACATGTACATGTATAAATAT AATGCCTTGGCCTTGTAGTGGACATGTTGGTTTCCCGAAATGCCAAAGGGTAAAAGTTTCTGTGAGTTTTTTAAGGACGG AACCAGAAAAAAGAATACACTACTTATAGACTGTTATTACGTACAATCGGCTGAAAACTGACGTTAATGATGCAAAAATT GATGCGATAGCTGATTTAGGCATTT
CDS sequence (LotjaGi4g1v0334000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTGGCCAAAGATATTCATTGTAGCAGCAAATATGAATATGAATGTTATTCTTTCTGTCCACTTCCTATGTTTCTT TCTTTTAACTACATCATTCATTAAAACATATGGAATAAATGTTGGAGCCAATGAATCTGATAGAATAGTTGATCTTCCTG GGGTACCTTCAAGCCCCTCAGTCTCACACTTTTCAGGTTACATCACGGTCAATGAAGACCATGGGAGGGCCCTTTTCTAT TGGTTTTTCGAAGCTCAATCCGAACCGTCCAAGAAGCCTCTCCTTCTCTGGCTCAATGGAGGACCTGGATGCTCCTCTGT TGGGTATGGTGCAGCTATTGAGATAGGGCCTCTTTTAGTCAACAAAAATGGTGAAGGACTAAATTTCAACCCATACTCAT GGAATCAAGAAGCAAATTTGTTATTTGTAGAGTCCCCTGTTGGAGTTGGTTTTTCTTACACCAACACCTCTTCTGATCTC ACCATATTAGAGGATAATTTTGTTGCTGAGGATGCCTACAATTTCTTGGTGAATTGGCTACAAAGATTCCCACAGTTCAA ATCCAGGGGCTTTTTTATTTCAGGAGAAAGCTATGGTGGACACTACATTCCTCAGCTTGCAGAGTTAATCTTTGATAGGA ACAAAGATAAAAATAAATACCCCTTTATCAATCTTAAAGGCTTTATAGTAGGGAATCCAGAAACTGAAGATTATTATGAC TATAAAGGTTTGCTGGAATATGCATGGAGCCATGCAGTTATATCAGATCAGCAATATGACAAAGCAAAACAAGTGTGTGA TTTCAAACAATTTCAATGGTCTAATGAATGCAATAAGGCCATGAATGAAGTCTTTCAAGATTACTCAGAAATTGACATAT ACAACATTTATGCCCCGAAATGTCGTCTAAATAGCACATCCGCAATTGCTAGTGAGGGCCTTGAACAACTTACAAAGGGG AGGAATGATTATAGAATGAAGAGGAAGAGAATATTTGGGGGCTATGATCCGTGTTATTCAACATATGCAGAAAAATACTT CAATAGGATAGATGTTCAATCATCTTTTCATGTAAATACTGAAAGAGGAAACACTAATATCACATGGGAGGTTTGCAATA ATTCCATATTGCAGACTTACAACTTCTCTGTCTTCTCCATCCTACCCATTTACACCAAACTCATCAAGGGTGGGCTTAAA ATATGGATTTATAGTGGAGATGCAGATGGCAGAGTACCAGTGATAGGGACACGATACTGCGTTGAGGCTCTTGGATTGCC TCTTAAGTCAAGTTGGCGCTCTTGGTACCTCGATAATCAGGTTGGAGGAAGGATAGTGGAGTATGAGGGTTTGACATACG TTACAGTGAGAGGAGCTGGTCATTTGGTGCCTCTAAACAAGCCCAAGGAGGCTCTTTCTCTTATTCATTCTTTCCTGGCC GGCGACCGCCTTCCTACTCGTCGTTGA
Protein sequence (LotjaGi4g1v0334000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFWPKIFIVAANMNMNVILSVHFLCFFLLTTSFIKTYGINVGANESDRIVDLPGVPSSPSVSHFSGYITVNEDHGRALFY WFFEAQSEPSKKPLLLWLNGGPGCSSVGYGAAIEIGPLLVNKNGEGLNFNPYSWNQEANLLFVESPVGVGFSYTNTSSDL TILEDNFVAEDAYNFLVNWLQRFPQFKSRGFFISGESYGGHYIPQLAELIFDRNKDKNKYPFINLKGFIVGNPETEDYYD YKGLLEYAWSHAVISDQQYDKAKQVCDFKQFQWSNECNKAMNEVFQDYSEIDIYNIYAPKCRLNSTSAIASEGLEQLTKG RNDYRMKRKRIFGGYDPCYSTYAEKYFNRIDVQSSFHVNTERGNTNITWEVCNNSILQTYNFSVFSILPIYTKLIKGGLK IWIYSGDADGRVPVIGTRYCVEALGLPLKSSWRSWYLDNQVGGRIVEYEGLTYVTVRGAGHLVPLNKPKEALSLIHSFLA GDRLPTRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 34 | 34 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 17 | 29 | 13 | - | – | |
| PANTHER | 22 | 485 | 464 | 2.6E-232 | ||
| PANTHER | 22 | 485 | 464 | 2.6E-232 | – | |
| Phobius | 30 | 34 | 5 | - | – | |
| Phobius | 35 | 488 | 454 | - | – | |
| Gene3D | 41 | 311 | 271 | 3.9E-105 | ||
| SUPERFAMILY | 45 | 484 | 440 | 7.43E-127 | ||
| Pfam | 53 | 480 | 428 | 1.6E-138 | ||
| PRINTS | 130 | 142 | 13 | 9.1E-28 | ||
| PRINTS | 143 | 153 | 11 | 9.1E-28 | ||
| PRINTS | 179 | 204 | 26 | 9.1E-28 | ||
| ProSitePatterns | 193 | 200 | 8 | - | ||
| Gene3D | 336 | 483 | 148 | 7.8E-36 | – | |
| PRINTS | 451 | 464 | 14 | 9.1E-28 | ||
| ProSitePatterns | 451 | 468 | 18 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type carboxypeptidase activity | Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi4g1v0334000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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