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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0334500 |
| Transcript ID | LotjaGi4g1v0334500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT5G49620.1 myb domain protein 78; Swiss-Prot: sp|Q9FGY3|MYB78_ARATH Transcription factor MYB78; TrEMBL-Plants: tr|A0A151SCT9|A0A151SCT9_CAJCA Myb-related protein 305 family; Found in the gene: LotjaGi4g1v0334500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71365847..71368246) extracted from Lotus japonicus Gifu genome v1.2.
CCCAACTATCATTTTCTTCTCCTTCCACATTTTCAAAGCCTCGTCTCCTCGTGTATTTATAAAAGCCCCACCCTTGTTTA TCCTCCTTGTAATAATCCAACAACTTCTTTGTCTCTCTCTCTCTCTCACACCCTATCTATCTCATCAATCCCTTACCTCT CCATCTAAGCTAATTACACCTCTTTTTCTTCTTTAGAGTTAGAATCTAATCTAGTAACCAGTGGCAATTGGTGAATATAT ATCAATGGATGTAAAAGGAAGAGGAGGAAGCAACAACAACACCGATACAACAATCATGAGTGAGGATGAGATGGACCTCC GAAGAGGCCCTTGGACTGCGGATGAGGACCTCACCCTCATGAATTACGTTGCTACTCATGGTGAAGGTCGTTGGAACACC CTCGCCCACTCAGCCGGTACGTAATTATATATTATGAGGGTGTATGTGGAGTGTCGTTACTCTTTCCGTTTAGGTTTTCC TGTTAACCACAAGTCCCTCCCTCCACGTATATCCTACCTATATCTTTTAACTGCCACCAATGAATTTTGGATAGAAACCC TTAGAACAAAAATTAGAAAGCCAAAGTTTGCGGTTTATGATGACTTAATTAAAGAGAATGTTTGCAGGGCTTAATTTAAT GACGTATGAAGATGTGTATTTGTCTCTAGGTTAATTAATTCATAATAATTTTGTGGTGTAAATAAAATATAGCTTGAAAT GTATGGATATTGGTTGGTGATGATGGCTTGGCCGTACCCACTAGTGGAGAAAAAGGAAAAGATAACGAATTTGGAATATA TAGTTCTCCCACCCAAAATCAATATTGTTTCAGAAGAAAAAAGTTTCACAAAATTAAGATCGTCATGCTCTTTCTATTTC CCTCATTAATACTAGTATTTTGTCACATTCATTAACCTTGTTTTATTGTTGCAGGCCTCAAGAGAACTGGGAAGAGTTGC AGATTGAGGTGGCTGAACTATCTCCGTCCTGATGTTCGACGAGGAAACATCACACTTGAAGAACAACTCTTGATTCTCGA TCTTCATTCTCGCTGGGGAAATAGGTAATTAATTGATCAAGCCAAATATGCATGCATTACCAATTCTTCACAATCAAATA TGGATTCATACCAAAAAATACACTCATTGAAAGATCGGCATATGAATGTCTCTGATTTGAACAAAATTACTTAGGATATA TGTAGGTAGTCAAGAAAAAAAATCATATTCATTATGATACATAACATTGCTTTTTCACATGTCTATTTTGTTTATTGATT GATTGGATCAGGTGGTCAAAAATTGCTCAGTATTTACCGGGAAGAACCGATAATGAGATCAAGAACTATTGGAGAACCCG AGTACAAAAGCTTGCAAAACAACTAAAATGTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGC CAAGGCTTGTAGAACGCATCCAAGCAGCCGCCACCGCAACCGCCACGACAACCAATTCAAGCTCTCCAACTCTATCCACC ATCACCACCACCACCACTGTCACCGCCACTAACACCCACGACGACAACATGAAAATGGGGTTAAGTACTCCTCCAGCTTC ATCTTCATCAGACTCGTTTGGGACTCAGGTTTCAGAATTGAGTGATTATTATCAACCCCCTCAACTTGGCTCTGATTATT GCATCAGAAGCCCCTCTGCAGGGTTGTTCTTCCCTCAGGGAATGGATTTTCAAACCACCGTGGTGGAGCCAAACACGCCG TGGATGATGATCCAAAGCGGTGGGGACTCTTCCGACAGCTTTTGGAACGCGGAAAACATGTTGCTTTTACAGCAGCAGCT CATGAATTAGTTAGTTAAAACATGTGAAAAACATTGGAGTGAGAAAGAGGGGAATTTTCAAAAAAAAAAGGAAGGGGCAG TTTTGAAATACAAAGAATTGAAAGGATAGAAACATCAAATAAAATAAATTCATATGTAGGGCACATGGCACGTAGGGTCG ATCTATGTATGTTCAACATATATAAATCTGAAACTGTGAATTAATTGGGGGAATTATTTATCAGTTTGTATTTTTTTTTT CTTCAATATTAGAGGTGGTGGTGGAATTGGAAAGATTGAAATGTGTCCTTTCTCTGCATGATTTCATTCTTTGAAATTAT TATTTTTTTTTGTATGGCTTATAAAAAAAATAACTTTTTTTTGTTATGTTTTATTTTAATTTCCTAGCTAGCCTTTTGTA TTGTGAGTTAGTGCATTATATATGGATGCAAGTTCGTATATGGTTAAATAATATTTTATTTGATGATGAGTATAGAGTAT ATATAATATATGGGTAATGATATATACACACCTCTTTTTTTATACACTTCATTTCCACCTATTTTTATTTCTATCTCTCC
CDS sequence (LotjaGi4g1v0334500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTAAAAGGAAGAGGAGGAAGCAACAACAACACCGATACAACAATCATGAGTGAGGATGAGATGGACCTCCGAAG AGGCCCTTGGACTGCGGATGAGGACCTCACCCTCATGAATTACGTTGCTACTCATGGTGAAGGTCGTTGGAACACCCTCG CCCACTCAGCCGGCCTCAAGAGAACTGGGAAGAGTTGCAGATTGAGGTGGCTGAACTATCTCCGTCCTGATGTTCGACGA GGAAACATCACACTTGAAGAACAACTCTTGATTCTCGATCTTCATTCTCGCTGGGGAAATAGGTGGTCAAAAATTGCTCA GTATTTACCGGGAAGAACCGATAATGAGATCAAGAACTATTGGAGAACCCGAGTACAAAAGCTTGCAAAACAACTAAAAT GTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCAAGGCTTGTAGAACGCATCCAAGCAGCC GCCACCGCAACCGCCACGACAACCAATTCAAGCTCTCCAACTCTATCCACCATCACCACCACCACCACTGTCACCGCCAC TAACACCCACGACGACAACATGAAAATGGGGTTAAGTACTCCTCCAGCTTCATCTTCATCAGACTCGTTTGGGACTCAGG TTTCAGAATTGAGTGATTATTATCAACCCCCTCAACTTGGCTCTGATTATTGCATCAGAAGCCCCTCTGCAGGGTTGTTC TTCCCTCAGGGAATGGATTTTCAAACCACCGTGGTGGAGCCAAACACGCCGTGGATGATGATCCAAAGCGGTGGGGACTC TTCCGACAGCTTTTGGAACGCGGAAAACATGTTGCTTTTACAGCAGCAGCTCATGAATTAG
Protein sequence (LotjaGi4g1v0334500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVKGRGGSNNNTDTTIMSEDEMDLRRGPWTADEDLTLMNYVATHGEGRWNTLAHSAGLKRTGKSCRLRWLNYLRPDVRR GNITLEEQLLILDLHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKLAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAA ATATATTTNSSSPTLSTITTTTTVTATNTHDDNMKMGLSTPPASSSSDSFGTQVSELSDYYQPPQLGSDYCIRSPSAGLF FPQGMDFQTTVVEPNTPWMMIQSGGDSSDSFWNAENMLLLQQQLMN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| MobiDBLite | 1 | 18 | 18 | - | – | |
| PANTHER | 15 | 283 | 269 | 1.8E-115 | – | |
| PANTHER | 15 | 283 | 269 | 1.8E-115 | – | |
| ProSiteProfiles | 22 | 74 | 53 | 16.933 | ||
| Gene3D | 24 | 80 | 57 | 5.7E-18 | – | |
| SUPERFAMILY | 24 | 121 | 98 | 6.36E-31 | ||
| SMART | 26 | 76 | 51 | 5.8E-14 | ||
| Pfam | 27 | 74 | 48 | 7.5E-16 | ||
| CDD | 29 | 74 | 46 | 3.80909E-11 | ||
| ProSiteProfiles | 75 | 129 | 55 | 23.209 | ||
| SMART | 79 | 127 | 49 | 4.7E-14 | ||
| Pfam | 80 | 123 | 44 | 2.9E-14 | ||
| Gene3D | 82 | 144 | 63 | 1.1E-16 | – | |
| CDD | 84 | 123 | 40 | 2.57709E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0334500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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