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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0336800 |
| Transcript ID | LotjaGi4g1v0336800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein COBRA, putative; TAIR: AT4G16120.1 COBRA-like protein-7 precursor; Swiss-Prot: sp|Q8GZ17|COBL7_ARATH COBRA-like protein 7; TrEMBL-Plants: tr|K7MJP5|K7MJP5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0336800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71700224..71703689) extracted from Lotus japonicus Gifu genome v1.2.
AAATTAAGAAAAGAAATATTCTTATGTTTGTAACTTTAAATTAAACTTTTTATTTGTATTATATTATAAAACCAAGGGAT GATTGGCTCAAGTGATACATGTTTGATCCTTCTTAAGTAAAGTCTCAAGTTTGAGTCTGGTCTCGTGGATAGAAAAAACC GCTGGAAGAGTTAGCTACAATATGACGTGGATATTCACGGCTCGAACAAGATTAACTCGACACCTGTCTTGCACCAAAAA TATATAAAAATCCCATTTCTCTGTCTTGGTTCAAATTCGAATTTCATTTCAATCAAACTGGACACAACACAACGATGTTC TCGCTTCTCAAAAGACACTGTTTCTTCGGCATCGCTGTCTTAGCCATCTTCCTCCTCTCAACGCCGCCGTTTACGGCGGC CCAATCCTGCAACGGTATACTCCTCACCTACGCCTACACCGCCGGCAAGCAGTTACCGCCGAACGTCACCGACCCTGCGA AGCAGCCGTACAAGTTCGAGTCCACGCTCACCGTGCTCAACAACGGCCTCGACGAGCTCAAGTCCTGGAAGGTCTTCGTC GGGTTTCAGCACGATGAGCTCTTGGTCTCCGCCTCCAATGCGGTGCTCGCCGACGGGACTACCCTCCCCGCCGCCGTTGG CAACGGTACCGTCTTCGCCGGGTACCCCATGACCGATCTCAAGACCGCTGTGGCCACCGCCGGTGACTTGACCCAGATGC AGGCTCAGATCGACCTCGTTGGCACCGTGTTCGGGGTTGCGCCGCCGAGTATTCCTTTACCCTCGAAAATCGAGCTCGCC GTTGATGGATTTCTCTGCCGCAAAGCCACTGGTCAAGGTAACCATTGTTTTCTAACTCTGATAAGGTTCTTCTTTGTTTC TAGATCAGTGATCTTTAGGTATTTGGTTGAATTTTGAATTGCAATTTACTTGATCTATGAATGGATTAGAATTGGGTTTC AATGAAGTGCTGCAATTTTTGGTAATGAGTGTTGACAAGGGTGTTTTTCTGTGAATTTTAGGGAAGAATGTGACTAATAT GTGTTGCACAAGAGATCCCAAGTTCAAAGCAAACATCACTACTGATGAGAAGTTTCTGCCTCGTCAAAATGGTGATCTTA CTATTATGTATGATGTGATCAGAACTTATGACTCTAGTTACTGGGCTGAGGTTGCGATTGCGAACCATAACGCTCTCGGT CGCCTTGACAATTGGAGATTGAGCTGGGATTGGATGAATGATGAGTTTATAAACTCAATGAAAGGGGCTTATCCATCTGT TGTGGATGTTTCTGGCTGTGTGTTTGGTAAGCAAGGAACATTCTACCAGCAACTTGATTTTTCCACTGTGTTGAATTGTG AGAGGAGGCCAACCATAGTTGATCTTCCTCCCACTAAGTTCAATGATACAGTCCTTGGGAAAATCCCTTCTTGCTGCCGG AACGGTACCATATTGCCACCATCCATGGACCCTAGCATGTCTGTTTCAAGGTTCCAGATGGAGGTTTTCAAAATGCCGCC GGCGCTTAATCGCTCCCAGCTTTCGCCGCCCCAGAATTGGAAGATTAGCGGCACACTCAACCCTGACTACAAATGTGGCC CTCCCATGCGGGTTAGTCCCACTGAGAATCCGGATCCATCTGGGGTACCGTCGAACAAAACTGTCATGGCCAGTTGGCAG GTTGTGTGCAACATAACAACTACCAAGAGAACATCAAGCAAATGCTGTGTCTCATTTTCAGCTTATTACAATGAGTCAGT TATACCATGCAAAACTTGTGCATGTGGATGCCCCGCGAACACTGGAAGAACTTGTAGTGCTACTGCACCAGCTATGTGGC TTCCACCGGATGCTCTTCTTATTCCTTTTGAGAACCGAACTGCCAAGGCTGTTGCTTGGGCTGACCTTAAACATCTACCA GTGTCTAACCCTTTGCCCTGTAGTGATAACTGCGGCGTGAGCATCAACTGGCATTTATTCACAGACTACAGGAAAGGTTG GACTGCAAGGGTAACACTTTTTAACTGGGGTGGCACTAATTTTGCTGACTGGTTTGCTGCAGTACAAATGGACAATGCAG CTGCAGGTTTTGAGAAAATGTACTCATTCAATGCAACCCTCCTAGATGGCGTGAATAATACAATAATCATGCAAGGTTTG CCCGGATTGAACTACCTTGTAGCTGAAGCTGACGGAGCTAATCCACTGAGAGATCCTAGGGTTCCTGGTAAACAACAATC AGTAATCTCATTCACAAAGAAAGCTACTCCTGGAATCAATGTAGTTCGTGGAGATGGATTTCCCTCTAAAGTCTTCTTCA ATGGAGAGGAATGCTCTCTTCCTTCAGTGATTCCAAGCAGTGGTTTCAGGAAGGGCTTTCCACGGGCTACTTTGGCGTTC CTAACACTGTTGTGGATCGTCTTGATCCGGTAATGGTGGCGGTATGTTTGCTTTTGACCCTGGCTTATTTATGTCCTGAG ACAATATCTGATTCATACATAGACCTCATCACGGAAACTCAGCGAGAAACGTCAGTGGACCAAGCCGTGCTGTTGTAACA TTCATGCTGTGTGTCTGGTTTGGATGCTGTGACGATCCTTGTTCAATTGATATGATTCTTTTGAAGCATGTTATAGTACA GAAGATTGTAGATTTGTGTTAGATGATAGAAAGATTTTCCTATATCTATTAGAAGTTTAAGTGTTTTTATTTATCCCTCA TTCGTTTGTTGTCTGAGACTCTGAGTAATTCTAATTTAGGCATTATCCTGTCTGAGACTCTGAGACTCAAATTATTATTT GCCTAGTGCAAGATGATGGGCACCACGATAGAAATGGACCTATGATTAAAATGTTCTGTTTTGTGAATTAAAAATGAACT AGTAGACTGCACAACTTAAAGGATTTCTCTGTCTTGACTATGTTGTTGATTGAAATTACTTATCATAATCATGTCATTGC TGGGATACACACATCTGTCTTGACTCAAATCATAAGCTTGTACATTTTCGTGTCCTGCTGCGGAACAATTAATTGGTCAG GAAACAAATGGATTTGGTGTGGATCTCTAATTTTGAATTCTGAAGGAAATTGCCTGCTTCCGGTGTGGCTGCGTTCTTGT GTTAGGACGCATTAGTCTAGCTTTTCTGTTTAGTCGTTTTTCTTTCAAGTGTAACTAAAAAAATATTTGAATTCGGATTC GCTACAGCTAAAGGATCCTACATTCTGAAGTTAGGGGTTTGTCTGATCCTAAGTCGACGGCTCTGGTTTTAAGAGGTTAT TGTGTACTTAAAATCAATATATTTGAACTACAACTGTATGATTAAAGATCGAACGGTCACTGACCCTGACTTCAGTGAAT GCAAAATCATATGGCTGCAAGGAATTCAAGTCGAGCATTTCTAAAACAATTGAAAATACATTATGGTCAAACAAAAATAT AGGCACCAAAAGCATCTATTTCCGAC
CDS sequence (LotjaGi4g1v0336800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTCGCTTCTCAAAAGACACTGTTTCTTCGGCATCGCTGTCTTAGCCATCTTCCTCCTCTCAACGCCGCCGTTTAC GGCGGCCCAATCCTGCAACGGTATACTCCTCACCTACGCCTACACCGCCGGCAAGCAGTTACCGCCGAACGTCACCGACC CTGCGAAGCAGCCGTACAAGTTCGAGTCCACGCTCACCGTGCTCAACAACGGCCTCGACGAGCTCAAGTCCTGGAAGGTC TTCGTCGGGTTTCAGCACGATGAGCTCTTGGTCTCCGCCTCCAATGCGGTGCTCGCCGACGGGACTACCCTCCCCGCCGC CGTTGGCAACGGTACCGTCTTCGCCGGGTACCCCATGACCGATCTCAAGACCGCTGTGGCCACCGCCGGTGACTTGACCC AGATGCAGGCTCAGATCGACCTCGTTGGCACCGTGTTCGGGGTTGCGCCGCCGAGTATTCCTTTACCCTCGAAAATCGAG CTCGCCGTTGATGGATTTCTCTGCCGCAAAGCCACTGGTCAAGGGAAGAATGTGACTAATATGTGTTGCACAAGAGATCC CAAGTTCAAAGCAAACATCACTACTGATGAGAAGTTTCTGCCTCGTCAAAATGGTGATCTTACTATTATGTATGATGTGA TCAGAACTTATGACTCTAGTTACTGGGCTGAGGTTGCGATTGCGAACCATAACGCTCTCGGTCGCCTTGACAATTGGAGA TTGAGCTGGGATTGGATGAATGATGAGTTTATAAACTCAATGAAAGGGGCTTATCCATCTGTTGTGGATGTTTCTGGCTG TGTGTTTGGTAAGCAAGGAACATTCTACCAGCAACTTGATTTTTCCACTGTGTTGAATTGTGAGAGGAGGCCAACCATAG TTGATCTTCCTCCCACTAAGTTCAATGATACAGTCCTTGGGAAAATCCCTTCTTGCTGCCGGAACGGTACCATATTGCCA CCATCCATGGACCCTAGCATGTCTGTTTCAAGGTTCCAGATGGAGGTTTTCAAAATGCCGCCGGCGCTTAATCGCTCCCA GCTTTCGCCGCCCCAGAATTGGAAGATTAGCGGCACACTCAACCCTGACTACAAATGTGGCCCTCCCATGCGGGTTAGTC CCACTGAGAATCCGGATCCATCTGGGGTACCGTCGAACAAAACTGTCATGGCCAGTTGGCAGGTTGTGTGCAACATAACA ACTACCAAGAGAACATCAAGCAAATGCTGTGTCTCATTTTCAGCTTATTACAATGAGTCAGTTATACCATGCAAAACTTG TGCATGTGGATGCCCCGCGAACACTGGAAGAACTTGTAGTGCTACTGCACCAGCTATGTGGCTTCCACCGGATGCTCTTC TTATTCCTTTTGAGAACCGAACTGCCAAGGCTGTTGCTTGGGCTGACCTTAAACATCTACCAGTGTCTAACCCTTTGCCC TGTAGTGATAACTGCGGCGTGAGCATCAACTGGCATTTATTCACAGACTACAGGAAAGGTTGGACTGCAAGGGTAACACT TTTTAACTGGGGTGGCACTAATTTTGCTGACTGGTTTGCTGCAGTACAAATGGACAATGCAGCTGCAGGTTTTGAGAAAA TGTACTCATTCAATGCAACCCTCCTAGATGGCGTGAATAATACAATAATCATGCAAGGTTTGCCCGGATTGAACTACCTT GTAGCTGAAGCTGACGGAGCTAATCCACTGAGAGATCCTAGGGTTCCTGGTAAACAACAATCAGTAATCTCATTCACAAA GAAAGCTACTCCTGGAATCAATGTAGTTCGTGGAGATGGATTTCCCTCTAAAGTCTTCTTCAATGGAGAGGAATGCTCTC TTCCTTCAGTGATTCCAAGCAGTGGTTTCAGGAAGGGCTTTCCACGGGCTACTTTGGCGTTCCTAACACTGTTGTGGATC GTCTTGATCCGGTAA
Protein sequence (LotjaGi4g1v0336800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSLLKRHCFFGIAVLAIFLLSTPPFTAAQSCNGILLTYAYTAGKQLPPNVTDPAKQPYKFESTLTVLNNGLDELKSWKV FVGFQHDELLVSASNAVLADGTTLPAAVGNGTVFAGYPMTDLKTAVATAGDLTQMQAQIDLVGTVFGVAPPSIPLPSKIE LAVDGFLCRKATGQGKNVTNMCCTRDPKFKANITTDEKFLPRQNGDLTIMYDVIRTYDSSYWAEVAIANHNALGRLDNWR LSWDWMNDEFINSMKGAYPSVVDVSGCVFGKQGTFYQQLDFSTVLNCERRPTIVDLPPTKFNDTVLGKIPSCCRNGTILP PSMDPSMSVSRFQMEVFKMPPALNRSQLSPPQNWKISGTLNPDYKCGPPMRVSPTENPDPSGVPSNKTVMASWQVVCNIT TTKRTSSKCCVSFSAYYNESVIPCKTCACGCPANTGRTCSATAPAMWLPPDALLIPFENRTAKAVAWADLKHLPVSNPLP CSDNCGVSINWHLFTDYRKGWTARVTLFNWGGTNFADWFAAVQMDNAAAGFEKMYSFNATLLDGVNNTIIMQGLPGLNYL VAEADGANPLRDPRVPGKQQSVISFTKKATPGINVVRGDGFPSKVFFNGEECSLPSVIPSSGFRKGFPRATLAFLTLLWI VLIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| ProSiteProfiles | 1 | 32 | 32 | 6.0 | – | |
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| PANTHER | 8 | 644 | 637 | 0.0 | – | |
| PANTHER | 8 | 644 | 637 | 0.0 | – | |
| Phobius | 9 | 21 | 13 | - | – | |
| Phobius | 22 | 29 | 8 | - | – | |
| Phobius | 30 | 625 | 596 | - | – | |
| Pfam | 221 | 400 | 180 | 8.5E-58 | ||
| Phobius | 626 | 643 | 18 | - | – | |
| Phobius | 644 | 644 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellulose microfibril organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall. | ||
| Cellular component | Anchored component of membrane | The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. |
Expression pattern of LotjaGi4g1v0336800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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