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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0337400 |
Transcript ID | LotjaGi4g1v0337400.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pectin lyase-like superfamily protein; TAIR: AT3G16850.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|A0A0B2P5F6|A0A0B2P5F6_GLYSO Putative polygalacturonase; Found in the gene: LotjaGi4g1v0337400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71785111..71788343) extracted from Lotus japonicus Gifu genome v1.2.
TGTGAAGGGACCATTAGCCCTCCCCCTTTCTGTCATCTGCATGATTAATGCTTATAATATTCACTTACTTGCATAAAGTT CTCCCTGTCCCTCTCCTCTGCCTTCTTCTTCTTCTTCTTCCCTATCATATTCTCTCTCAGCCTCTCTAATTTTTTCCCTT TTTGGTTCTTTCTTGGTCCTTGAGCACTTCCTCTGCCTCTTTTGTCAGAGGCTTTGACCAATAAAATGCTTGTACGTACG TTTCTCTGCTTGATTTTGTTCAGTGTTTATACTTCATAGTTTTATATTGCTTTCAGGTTGATTGATGTGAAGCAAATTTG ATATCAAATTTAAATCTTTGGTTGAATTCTATATGTTTGAGTAAATTTTCAAGTGTTCCAATGACACGGGTCCTCTGCTA CGTTTTGTTTTGTTTTTACTCTATTGGGGTTTGGTCTTGTTTCTGCCAGAGGCAATGACATTGGTAGTTGCTGTTGATGG TAGGCTTCAATAAAAACCTATATGATCTGATAAACTTGCAAACTTTCTTTTGAATTGTCACTTTTTAAAGCTCTTAGTGG TTTCAATTCTCAACTGCTGAATATAATGTCTCTTGTTTTGATAAGCAATCTGATATTCTGTTTCTAGTCTTTCTCAATTG TTTTTGAATTCACTGACCCCTAGTGTTGCATTCAACCTATGATTGTTTCAATTTCTTCTCAATTGTTTTTATTTGCACAT TCTTATTGGAAATGCTTATGAGTTATCTGAGTTATTTACTCAGGGAAGATGATTCTTTGTCTCTACTTGTCTATGAGCCT ATGATGAATAATTGTATATGTAAGGTATCTGATGAGAATCATTAATTGGATTGTTTTATTTTGTTTTGTTTTTGAATCCA CATTCAGGTGGCATTGCTGTTGCTGCTGGCTTTGAGCAATGAAGTCAAGGTGAATGGTGATGTTGGAAGTGTAGCACATT GTGAGATTGCTCATGGACTAAAACCAAGACCACACACTGTCTCCATTTTGGAGTTTGGTGCTGTTGGAGATGGTAAAACA CTGAACACTATTGCATTCCAGAATGCTGTCTTCTATCTCAAGTCATTTTCTGACAAGGGTGGAGCTCAGCTCTATGTTCC CCCAGGAAAATGGTTGACTCAAAGTTTCAATCTCACAAGCCATCTTACCCTCTTTTTGGAAAAAGGTGCTGTCATCATTG GATCTCAGGTATTTTATATTATACCTTTTACTTCTTTCTTTTTTGTTCTTCACTAGCTTTTGATTATTGTCTTTTTGGCT GATAGAGATAGTACATATCAGTGTTGTCAAATAGCTGTTCTAGCGGTGCTATAGCGCTATAGTGTAGCGCTTTTTTGGCT TACCGCTATTACAAGCTACTTGCCGCTTTTTCCACTTTAAGAGGCTAGAAATAGCGGATTTTTAACTTACCGCTATAGTC TGCGATCCGCGATTAACAACACCGATACATATAACATATTCCAATATAGGAGTTAGTTACTCTTACTCAGAAGTTGTTTT TTAAGACTTGTGTATTACATTATATTCTTACTTTGTTAGGATCCATATCACTCGGAAGTTGTTGATCCGCTGCCTTCGTA TGGCCGCGGAATTGAAGTCCCCGGAGGAAGATATCAGAGCTTGATAAATGGATACAAGTTAGAAGATGTTGTCATAACAG GTTTTATTCCCTACCAAGTTTTGCTTCTTACTTCTCTTGCAAGCAGTTCTTCATTCAATTTTCCTCCTCATGTTTCTGAC TTGAATGAATTTTCATGTTAATGTACATTGCTAGGTAATAATGGAACCATTGATGGAATGGGATTGGCTTGGTGGGAATC GTTTAGCTCTCACTCGCTGAACCATAGCCGTCCGCATCTGATTGAATTAGTAGCATCTAGTCATGTGGTAGTTTCAAATC TTACATTCTTGAATGCTCCTGCATATAGCATCCACCCAGTTTATTGCAGGCATGTTCTTGCGTCTTCTGAAAATTACTAG TAATTCTTATATGGACAGTGATATTGACTCGATTATATGTGTTGTGATACAGCTATGTCCATATTCATAATCTTACAATC TTTGCTCCTCCAGAATCTCCTGATACTGTTGGCTTAGTACCAGGTTTGTAACATATTCAATAATCTATTACTAAACTTTA TAAAAGGTCACTTAACTAACTCTTGTGCGCTTTGTGTTTTCAGATTCGTCCGATCATGTTTGCATAGAGGACTGTGTAAT TGCCACAGGCTATGATGCAATTGCTCTCAAAAGTGGCTGGGACGAGTATGGCATAGCCTACGGCCGGCCGACGGAGAATG TACACATTAGAAGGGTGGACCTGCAAGCTTCTTCTGGCTCCGCTCTCGCATTTGGAAGCGACATGTCTGGTGGTATTTCA AATGTTCTTGTGGAGAATGCTCATCTCCACAACTCAAATGGCGGCATCGAGTTTAGAACCACCAGGGGTAGAGGTGGTTA TATGAAGGACATCATCATATCAGATGTAGAAATGAAGAATGTTTACACAGCAATTGCTGCAAGAGGCCATTGTGGGTCTC ATCCTGATGATAAATTTGACCCCAATGCTCTCCCAGTTTTGGATCACATCATTTTGCAAGATATCACAGGCACAAATATT ACCATTGCAGGAAACTTTGCTGGACTTCAAGATTCCCCCTTCACCAACATATGCCTTTCCAACATAACCTTGTCTATGAA CTTTGCTTCCTCTATCACTTGGGAATGCTCGAATGTCTCCGGATATTCAGATTCTGTTTTCCCCAAACCCTGTCCTAATC TGGAGAGCCATTCTGATTCTTCCTCATTCTGCCTTTCCATGCTCTCCATGCCGAGTACCGGTAGAGAAACAGCAGTCATG TGATAATTTTTATCTACCAAAGGCTCATATACTTGAGTTCTCTGCATGATGTCGATGAAAAAGTGAATATCTTGCTACAA GCCACATTCTTTTCAATGAGAAAGTTATTTTGATTATTTATTTTTTCATCTTCAGATTTACATTCTTGTGTGCTGCAAAC AGCACATTATATGTACAGTTCTATTATTCATTCATGTATAATGAAATTTTGGTAATACCCGCAACAGGATTCAATCTGAT AGTTTTTCTTTTGCGCTATTCCTTTGTGATTTCACTGTCAAGGCCAATTAAAGAAGGATAAACTTGGAGCATATTTATCC ATGAAGGTAAAGAGTGATGTTGCATAATTTTAA
CDS sequence (LotjaGi4g1v0337400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGTGGCATTGCTGTTGCTGCTGGCTTTGAGCAATGAAGTCAAGGTGAATGGTGATGTTGGAAGTGTAGCACATTG TGAGATTGCTCATGGACTAAAACCAAGACCACACACTGTCTCCATTTTGGAGTTTGGTGCTGTTGGAGATGGTAAAACAC TGAACACTATTGCATTCCAGAATGCTGTCTTCTATCTCAAGTCATTTTCTGACAAGGGTGGAGCTCAGCTCTATGTTCCC CCAGGAAAATGGTTGACTCAAAGTTTCAATCTCACAAGCCATCTTACCCTCTTTTTGGAAAAAGGTGCTGTCATCATTGG ATCTCAGGATCCATATCACTCGGAAGTTGTTGATCCGCTGCCTTCGTATGGCCGCGGAATTGAAGTCCCCGGAGGAAGAT ATCAGAGCTTGATAAATGGATACAAGTTAGAAGATGTTGTCATAACAGGTAATAATGGAACCATTGATGGAATGGGATTG GCTTGGTGGGAATCGTTTAGCTCTCACTCGCTGAACCATAGCCGTCCGCATCTGATTGAATTAGTAGCATCTAGTCATGT GCTATGTCCATATTCATAA
Protein sequence (LotjaGi4g1v0337400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVALLLLLALSNEVKVNGDVGSVAHCEIAHGLKPRPHTVSILEFGAVGDGKTLNTIAFQNAVFYLKSFSDKGGAQLYVP PGKWLTQSFNLTSHLTLFLEKGAVIIGSQDPYHSEVVDPLPSYGRGIEVPGGRYQSLINGYKLEDVVITGNNGTIDGMGL AWWESFSSHSLNHSRPHLIELVASSHVLCPYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 19 | 19 | - | – | |
SignalP_EUK | 1 | 19 | 19 | - | – | |
Phobius | 1 | 1 | 1 | - | – | |
PANTHER | 2 | 188 | 187 | 7.9E-104 | – | |
Phobius | 2 | 11 | 10 | - | – | |
PANTHER | 2 | 188 | 187 | 7.9E-104 | – | |
Phobius | 12 | 19 | 8 | - | – | |
Phobius | 20 | 192 | 173 | - | – | |
SUPERFAMILY | 29 | 187 | 159 | 2.69E-31 | ||
Gene3D | 35 | 189 | 155 | 1.1E-36 | ||
Pfam | 40 | 97 | 58 | 1.9E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0337400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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