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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0338400 |
| Transcript ID | LotjaGi4g1v0338400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT5G27870.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q42920|PME_MEDSA Pectinesterase/pectinesterase inhibitor; TrEMBL-Plants: tr|I1KMW7|I1KMW7_SOYBN Pectinesterase; Found in the gene: LotjaGi4g1v0338400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71876337..71879075) extracted from Lotus japonicus Gifu genome v1.2.
AACAAAGCAAGTGGTTTTAGGAGAATGCTCCTGTATAAATAGCACCATTCTCCAACCAAGTTCCAAAGCACACAGTGACC CAGGGCTTTGAAAAAACACTGCCCATAGGGTCATCGATCAACCGTGAGGACAAGGGGAAAACAAATAAAATTTAACAAAT AAACAAAAGGGAAGGTTAAATTTCTCAAGGCTGGGTAGCGATGACCACTGCATTTAACAGCAACCAGGAGAGGAAGAAGA AGTATGCCATTCTCGGCGTCTCTTCTATCTTGCTTGTGGCCATGGTAGCTTGCGTGGCCGTCGGCATAAACAGCGGCGCC GAAGTTGGCAGCGAAGGATCAAGTGACAACCATGTTACAAAATCTCAAAAGAACGTAAAGGCAAGCACAAACCTATATAC ATTTCAAATTGAAATATTACATCTCTTTATTCTCTATTTCACTAATAAAATTTTAATATTAAAAATAACCAAATAAATTT GTAACTAATTTCCTCGTTCATATCTTATTTACTCACATGGTGAATAATGAGAAAAAATTTGAAACAACATATACATTTAG GAAGTGCCTCATAACGTAAATTTTCTGAATTTGTCACGTTGTTTAGGTCATATGCGATTCAGTGGAATACAAAGAGACAT GCGAGAAGAGTCTTGCCAAGGCCTCAAACGAGACCTCAGACATGAAGGAGTTGATCAAAGCCGCATTCACCGCGACCGCA GATGAGCTCCAAAACCAGATAGTAAACTCCACCCTCTACCAAGAGTTGGCCAAGGACAACATGACAAGACAAGCCATGGA CATCTGCAAGGAAGTCCTAGGTTATGCTGTTGATGACATTCACAAATCTGTCCACACGTTGGACAAGTTTGATCTTAGCA AGCTAGAAGAATACGCCTACGACCTCAAGGTTTGGCTTGCCGGTACCCTCTCCCACCAACAAACATGCTTGGACGGGTTT GTGAACACCACCACCAACGCTGGGCAAACCATGGCCAAGGTTCTCAACACCTCTTTGGAGCTCAGCAACAACGCGTTGGA CATAGTGAACGGTGTGTCTAGTCTTTTCAAGGGTCTTAACTTGACAACTTTCACCACAAACACCCCCACCGCCGCCGCCA ACAGAAAGCTTCTCGCTGAGGATGGTTTCCCTTCATGGATGGGCCAAGCTCAGAGGGAGCTCCTTCAGGCTGGGCCTGGG AATGTTAAGGCTGATGTGATTGTGGCTCAAGATGGTAGTGGCCAATTCACAACACTTACTGAGGCACTTAAACTTGTTCC TAAAAAGAACAGGAAGCCTTTTGTGATTTATGTCAAGGCTGGTATCTACAAAGAGTATGTTGAACTTGATAAGAAAAAGG CCCATGTCACTATCATCGGAGATGGTCCCACAAAGACCAGATTCACCGGCAGCAAGAACTATGTTGATGGTGTGCAAACC TACTTCACCGCGACCTTCAGTAAGTACCACGTAATTGTTTCTCTATTTTTTTACATCATCATATATCACATTCATCTCTT ATTCTACTAGCAATAAAAAAAATTGATATGAATTTTCAGGTGTGAACGCTCCTGCCTTCATGGCAATGCACGTTGGGTTC GAGAACTCGGCTGGAGCAGAGAAGCACCAAGCTGTGGCACTGAGGGTGACAGCCGACAAGGCAGTGTTCTATGACTGCCA TATGGATGGATTCCAAGATACCTTGTACGTCCAGTCCCAGCGCCAATTCTACCGTGATTGTGTAGTCTCTGGCACCGTCG ACTTCGTCTTTGGTGACGCTGTGGGAGTTTTCCAGAAGTGCAAGTTCATCGTGAAGAAGCCCCTGGAGAACCAGCAATGC ATGGTGACGGCTGGCGGCAGATCCAAGATCGACAGCCCCAGCGCACTGGTGTTCCAAAGCTGCCACTTCACCGGTGAGCC CGGAATGAACCTCGTGACCCCAAAGATCTCGTACCTCGGAAGACCATGGAGGTTGTACTCTAAGGTTGTGATCATGGACT CCCGCATCGATGACATTTTCGTACCAGAAGGTTACATGGCGTGGATGGGAAGTGCCTTCAAGGACACATGCTCCTACTAT GAGTACAACAACGTGGGACTTGGTGCTAACACTATTGGTCGTGTCAAATGGCCAGGTGTTAAGGTCATCACTCCTCTTGA GGCTGATGATTTCTATCCAGGAAGGTTTTACGAAATCGCTAACTCAACTCAACGTGATGCTTGGATCCTTCATTCCGGTG TGCCCTATTCCCTTGGCCCACTTCCTCCTCCTATTGGCTCAAACCCCAAGCCCTAAACCCATCGACAAAGCTTGATCACT CGATGCATGTTCTTCTATGAACCGAATATAGAGACTATATATAGCCATCCCTGGTCCTCATATCCATGCATGCTAAAATC CAACCACTTTGATGACATTTTATTTATGTCATAATTTAAGGAAAGTAATGCAGTGGTATATTTGTTAATATTTAAGTTTC TCCTATGATTTAATTTTCTCACAATTGATAGCTCCTTGCTCATAGAATTCAAAATGACCGATTGGTTTCTGGATTCTCTC ATTAATTTGTCCATTGCTGGTTCTGTGCACGTTCTGTTACTCATATGCTTCTTACTTTAATTTTGAGAAACATCTATTTA TTTTGATAATGTCGAATAATAGTTAGAAAATTGATGTTTTAGCCCTTAAGGCTTCGACTCATTGTAAATGTTTTTGGCCA AACACTACTTTAATAATTA
CDS sequence (LotjaGi4g1v0338400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCACTGCATTTAACAGCAACCAGGAGAGGAAGAAGAAGTATGCCATTCTCGGCGTCTCTTCTATCTTGCTTGTGGC CATGGTAGCTTGCGTGGCCGTCGGCATAAACAGCGGCGCCGAAGTTGGCAGCGAAGGATCAAGTGACAACCATGTTACAA AATCTCAAAAGAACGTAAAGGTCATATGCGATTCAGTGGAATACAAAGAGACATGCGAGAAGAGTCTTGCCAAGGCCTCA AACGAGACCTCAGACATGAAGGAGTTGATCAAAGCCGCATTCACCGCGACCGCAGATGAGCTCCAAAACCAGATAGTAAA CTCCACCCTCTACCAAGAGTTGGCCAAGGACAACATGACAAGACAAGCCATGGACATCTGCAAGGAAGTCCTAGGTTATG CTGTTGATGACATTCACAAATCTGTCCACACGTTGGACAAGTTTGATCTTAGCAAGCTAGAAGAATACGCCTACGACCTC AAGGTTTGGCTTGCCGGTACCCTCTCCCACCAACAAACATGCTTGGACGGGTTTGTGAACACCACCACCAACGCTGGGCA AACCATGGCCAAGGTTCTCAACACCTCTTTGGAGCTCAGCAACAACGCGTTGGACATAGTGAACGGTGTGTCTAGTCTTT TCAAGGGTCTTAACTTGACAACTTTCACCACAAACACCCCCACCGCCGCCGCCAACAGAAAGCTTCTCGCTGAGGATGGT TTCCCTTCATGGATGGGCCAAGCTCAGAGGGAGCTCCTTCAGGCTGGGCCTGGGAATGTTAAGGCTGATGTGATTGTGGC TCAAGATGGTAGTGGCCAATTCACAACACTTACTGAGGCACTTAAACTTGTTCCTAAAAAGAACAGGAAGCCTTTTGTGA TTTATGTCAAGGCTGGTATCTACAAAGAGTATGTTGAACTTGATAAGAAAAAGGCCCATGTCACTATCATCGGAGATGGT CCCACAAAGACCAGATTCACCGGCAGCAAGAACTATGTTGATGGTGTGCAAACCTACTTCACCGCGACCTTCAGTGTGAA CGCTCCTGCCTTCATGGCAATGCACGTTGGGTTCGAGAACTCGGCTGGAGCAGAGAAGCACCAAGCTGTGGCACTGAGGG TGACAGCCGACAAGGCAGTGTTCTATGACTGCCATATGGATGGATTCCAAGATACCTTGTACGTCCAGTCCCAGCGCCAA TTCTACCGTGATTGTGTAGTCTCTGGCACCGTCGACTTCGTCTTTGGTGACGCTGTGGGAGTTTTCCAGAAGTGCAAGTT CATCGTGAAGAAGCCCCTGGAGAACCAGCAATGCATGGTGACGGCTGGCGGCAGATCCAAGATCGACAGCCCCAGCGCAC TGGTGTTCCAAAGCTGCCACTTCACCGGTGAGCCCGGAATGAACCTCGTGACCCCAAAGATCTCGTACCTCGGAAGACCA TGGAGGTTGTACTCTAAGGTTGTGATCATGGACTCCCGCATCGATGACATTTTCGTACCAGAAGGTTACATGGCGTGGAT GGGAAGTGCCTTCAAGGACACATGCTCCTACTATGAGTACAACAACGTGGGACTTGGTGCTAACACTATTGGTCGTGTCA AATGGCCAGGTGTTAAGGTCATCACTCCTCTTGAGGCTGATGATTTCTATCCAGGAAGGTTTTACGAAATCGCTAACTCA ACTCAACGTGATGCTTGGATCCTTCATTCCGGTGTGCCCTATTCCCTTGGCCCACTTCCTCCTCCTATTGGCTCAAACCC CAAGCCCTAA
Protein sequence (LotjaGi4g1v0338400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTAFNSNQERKKKYAILGVSSILLVAMVACVAVGINSGAEVGSEGSSDNHVTKSQKNVKVICDSVEYKETCEKSLAKAS NETSDMKELIKAAFTATADELQNQIVNSTLYQELAKDNMTRQAMDICKEVLGYAVDDIHKSVHTLDKFDLSKLEEYAYDL KVWLAGTLSHQQTCLDGFVNTTTNAGQTMAKVLNTSLELSNNALDIVNGVSSLFKGLNLTTFTTNTPTAAANRKLLAEDG FPSWMGQAQRELLQAGPGNVKADVIVAQDGSGQFTTLTEALKLVPKKNRKPFVIYVKAGIYKEYVELDKKKAHVTIIGDG PTKTRFTGSKNYVDGVQTYFTATFSVNAPAFMAMHVGFENSAGAEKHQAVALRVTADKAVFYDCHMDGFQDTLYVQSQRQ FYRDCVVSGTVDFVFGDAVGVFQKCKFIVKKPLENQQCMVTAGGRSKIDSPSALVFQSCHFTGEPGMNLVTPKISYLGRP WRLYSKVVIMDSRIDDIFVPEGYMAWMGSAFKDTCSYYEYNNVGLGANTIGRVKWPGVKVITPLEADDFYPGRFYEIANS TQRDAWILHSGVPYSLGPLPPPIGSNPKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 14 | 14 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 32 | 32 | - | – | |
| PANTHER | 14 | 577 | 564 | 3.0E-221 | – | |
| PANTHER | 14 | 577 | 564 | 3.0E-221 | – | |
| Phobius | 15 | 36 | 22 | - | – | |
| TMHMM | 17 | 36 | 20 | - | – | |
| Phobius | 37 | 589 | 553 | - | – | |
| TIGRFAM | 50 | 209 | 160 | 2.2E-18 | ||
| SMART | 54 | 206 | 153 | 1.6E-22 | ||
| Gene3D | 55 | 211 | 157 | 4.6E-13 | ||
| SUPERFAMILY | 57 | 209 | 153 | 5.23E-26 | ||
| Pfam | 59 | 206 | 148 | 1.4E-19 | ||
| CDD | 62 | 212 | 151 | 2.09682E-36 | – | |
| Gene3D | 258 | 578 | 321 | 2.1E-109 | ||
| SUPERFAMILY | 261 | 576 | 316 | 1.2E-90 | ||
| Pfam | 263 | 555 | 293 | 8.0E-115 | ||
| ProSitePatterns | 288 | 307 | 20 | - | ||
| ProSitePatterns | 407 | 416 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi4g1v0338400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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