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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0340500 |
| Transcript ID | LotjaGi4g1v0340500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Organic cation/carnitine transporter; TAIR: AT1G16390.1 organic cation/carnitine transporter 3; Swiss-Prot: sp|Q9SA38|OCT3_ARATH Organic cation/carnitine transporter 3; TrEMBL-Plants: tr|G7LG23|G7LG23_MEDTR Organic cation/carnitine transporter; Found in the gene: LotjaGi4g1v0340500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72016189..72018041) extracted from Lotus japonicus Gifu genome v1.2.
CACATATTTTTAATTTAGATAAAAATGCATTTAATCCACTATATAAATTATAAACCACTCTAACCCTTCACATTTCCCTC CATATCAGTATCCCAACAACTCACATAATGGAGGCTGCAGCTTCAGTTCAAACAAGCGCACCTTCCCAATCTCACTCCTC TGCAGCAGAGCATGAGAGAAAACTCAAGCAGTCATGGGATGACATGGTCGAAAAAAGCTTAGGAAACTTCGGGTGGATGG AGTTTCTTCAAGCCGTGCTCGTCGCTGTTGCTATGTTCTTCGACGCACAGCAATCTTTTATCAGCATCTACACAGATAAC TACCCAACATGGCACTGCACTAACACAAACACAAACAACACCACCACAACATGCTCCTCTGCTTCTGACATTTGCAAAAT TCCAAGATCTTCTTGGTCATGGGACTCACACCCTTCCATGACCATTATTTCCCACTGGGGGCTTGAATGTGCAAGCACCT TCATCACTGGTTTACCCCAATCTGCTTTTTTCATTGGTTGCCTTCTCGGTTCATCTGTTCTTGCAGCTTTAGCTGATTCC TCTTTAGGAAGAAAAAACATGCTTGTTTTCTCTTGTGTGTCCATGTCAATCACCTCACTCCTCATCATTTTCTCCCCCAA CATCTGGGTCTACTCTGCCTTGAAATTCCTAATCGGTTTCTGGCGTTCCTCCATTGGAACCTGTGTCCTGGTTCTCCTCA CAGAAAATGTGAGCGCAGAGTGGAGGTTCAGGGTGGGGATTGTGGAGTATTTCACCTTCGCAATGGGGTACATGTCCTTA CCAGGCATAGCCTATGTCAACAGAAGCCGCTCATGGAGATCTCTGTACCTCTGCACTTCAGCCCCTGCTCTGTTTTACCC TGTTCTAGCTTACCTCTTCGTTACAGAATCACCCAGATGGCTTCTCATGCAGGGTAGAGTCAAAGAAGCCATGAAAATCC TCAAAGGGGTCACCTTATCAGAACACAACGCTAATTTCATAGAAACCTTGAAACCCAAAAAAAAGGTTTCAATTTTTCAA CTCTACTCTTCAATAGGTGAACTTTTCAAGAAACGCTGGGCTCTGACAAGAATGGTGGCGGTGATGGTGCTAGGGATCGG TGTCGGCATGGTGTATTTCGGGATGCCATTAGCGGTGGGGAACTTGGGTTTCAACATTTACTTGGCTGTGGTGTTCAATG GATTGATGGAGTTCCCTTCTTTCATAGTCGTCTATTTCTTGGAAAACTGCAGGAGAAAGCCATCAATTCTTGTTTTCTAT TTTTTGGGTGGGATTTGCTGTTTGATGTGCGTTTTTGTTGGTGATGAATCACAGGTTGCAAAAGTAGGGCTAGCAATGGC GTCATTTTTTTTTGCTTGCACCGCTTACAGTGTTTTCCTCATATACATTATTGAGCTGTTCCCCACATGTGTGAGGAACA CCACAACCTCTTTGGTGAGGCAAGCAGTTACATTTGGGTGCATTTTCATCCCTTTTCTGATATCTGTTGGGAGGAAAAAC AATCTTTTTTCTTATGGGGTGTTTGGGATTGTTATAATTCTATCCAATTTAACTTTGTTTGGGTTGCCTGAGACCATGGG GATTGTGCTCTGTGATACCATGGATGAGCAGGAGAAAAAGGAAACACTCAGAGACGAAACAGGCAATTTGTGATGCCTTT TAGTAGTGCTCGATCATTTGATGTACCTTGTCTCATAAGTTTGCCTAATGTTAATTTTATTTTTATTTTTGAAATTCCTA ATGTTAATTGTACCAATCATCTCACTTAGTTAAGGTATTCTCTGGTACAGGAAATTTTTTTATGGGTATAATACATGAAT GACATGACCCAAC
CDS sequence (LotjaGi4g1v0340500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCTGCAGCTTCAGTTCAAACAAGCGCACCTTCCCAATCTCACTCCTCTGCAGCAGAGCATGAGAGAAAACTCAA GCAGTCATGGGATGACATGGTCGAAAAAAGCTTAGGAAACTTCGGGTGGATGGAGTTTCTTCAAGCCGTGCTCGTCGCTG TTGCTATGTTCTTCGACGCACAGCAATCTTTTATCAGCATCTACACAGATAACTACCCAACATGGCACTGCACTAACACA AACACAAACAACACCACCACAACATGCTCCTCTGCTTCTGACATTTGCAAAATTCCAAGATCTTCTTGGTCATGGGACTC ACACCCTTCCATGACCATTATTTCCCACTGGGGGCTTGAATGTGCAAGCACCTTCATCACTGGTTTACCCCAATCTGCTT TTTTCATTGGTTGCCTTCTCGGTTCATCTGTTCTTGCAGCTTTAGCTGATTCCTCTTTAGGAAGAAAAAACATGCTTGTT TTCTCTTGTGTGTCCATGTCAATCACCTCACTCCTCATCATTTTCTCCCCCAACATCTGGGTCTACTCTGCCTTGAAATT CCTAATCGGTTTCTGGCGTTCCTCCATTGGAACCTGTGTCCTGGTTCTCCTCACAGAAAATGTGAGCGCAGAGTGGAGGT TCAGGGTGGGGATTGTGGAGTATTTCACCTTCGCAATGGGGTACATGTCCTTACCAGGCATAGCCTATGTCAACAGAAGC CGCTCATGGAGATCTCTGTACCTCTGCACTTCAGCCCCTGCTCTGTTTTACCCTGTTCTAGCTTACCTCTTCGTTACAGA ATCACCCAGATGGCTTCTCATGCAGGGTAGAGTCAAAGAAGCCATGAAAATCCTCAAAGGGGTCACCTTATCAGAACACA ACGCTAATTTCATAGAAACCTTGAAACCCAAAAAAAAGGTTTCAATTTTTCAACTCTACTCTTCAATAGGTGAACTTTTC AAGAAACGCTGGGCTCTGACAAGAATGGTGGCGGTGATGGTGCTAGGGATCGGTGTCGGCATGGTGTATTTCGGGATGCC ATTAGCGGTGGGGAACTTGGGTTTCAACATTTACTTGGCTGTGGTGTTCAATGGATTGATGGAGTTCCCTTCTTTCATAG TCGTCTATTTCTTGGAAAACTGCAGGAGAAAGCCATCAATTCTTGTTTTCTATTTTTTGGGTGGGATTTGCTGTTTGATG TGCGTTTTTGTTGGTGATGAATCACAGGTTGCAAAAGTAGGGCTAGCAATGGCGTCATTTTTTTTTGCTTGCACCGCTTA CAGTGTTTTCCTCATATACATTATTGAGCTGTTCCCCACATGTGTGAGGAACACCACAACCTCTTTGGTGAGGCAAGCAG TTACATTTGGGTGCATTTTCATCCCTTTTCTGATATCTGTTGGGAGGAAAAACAATCTTTTTTCTTATGGGGTGTTTGGG ATTGTTATAATTCTATCCAATTTAACTTTGTTTGGGTTGCCTGAGACCATGGGGATTGTGCTCTGTGATACCATGGATGA GCAGGAGAAAAAGGAAACACTCAGAGACGAAACAGGCAATTTGTGA
Protein sequence (LotjaGi4g1v0340500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAAASVQTSAPSQSHSSAAEHERKLKQSWDDMVEKSLGNFGWMEFLQAVLVAVAMFFDAQQSFISIYTDNYPTWHCTNT NTNNTTTTCSSASDICKIPRSSWSWDSHPSMTIISHWGLECASTFITGLPQSAFFIGCLLGSSVLAALADSSLGRKNMLV FSCVSMSITSLLIIFSPNIWVYSALKFLIGFWRSSIGTCVLVLLTENVSAEWRFRVGIVEYFTFAMGYMSLPGIAYVNRS RSWRSLYLCTSAPALFYPVLAYLFVTESPRWLLMQGRVKEAMKILKGVTLSEHNANFIETLKPKKKVSIFQLYSSIGELF KKRWALTRMVAVMVLGIGVGMVYFGMPLAVGNLGFNIYLAVVFNGLMEFPSFIVVYFLENCRRKPSILVFYFLGGICCLM CVFVGDESQVAKVGLAMASFFFACTAYSVFLIYIIELFPTCVRNTTTSLVRQAVTFGCIFIPFLISVGRKNNLFSYGVFG IVIILSNLTLFGLPETMGIVLCDTMDEQEKKETLRDETGNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 40 | 40 | - | – | |
| PANTHER | 21 | 512 | 492 | 2.0E-235 | – | |
| PANTHER | 21 | 512 | 492 | 2.0E-235 | – | |
| TMHMM | 38 | 60 | 23 | - | – | |
| Phobius | 41 | 58 | 18 | - | – | |
| ProSiteProfiles | 48 | 498 | 451 | 14.121 | ||
| Phobius | 59 | 157 | 99 | - | – | |
| Pfam | 80 | 500 | 421 | 2.4E-29 | ||
| CDD | 93 | 494 | 402 | 6.60026E-138 | – | |
| SUPERFAMILY | 115 | 499 | 385 | 7.98E-41 | ||
| TMHMM | 126 | 148 | 23 | - | – | |
| Phobius | 158 | 181 | 24 | - | – | |
| TMHMM | 160 | 182 | 23 | - | – | |
| Phobius | 182 | 186 | 5 | - | – | |
| Phobius | 187 | 204 | 18 | - | – | |
| TMHMM | 187 | 204 | 18 | - | – | |
| Phobius | 205 | 215 | 11 | - | – | |
| TMHMM | 216 | 238 | 23 | - | – | |
| Phobius | 216 | 237 | 22 | - | – | |
| Phobius | 238 | 242 | 5 | - | – | |
| TMHMM | 243 | 265 | 23 | - | – | |
| Phobius | 243 | 265 | 23 | - | – | |
| Phobius | 266 | 324 | 59 | - | – | |
| Phobius | 325 | 345 | 21 | - | – | |
| TMHMM | 329 | 351 | 23 | - | – | |
| Phobius | 346 | 356 | 11 | - | – | |
| TMHMM | 356 | 378 | 23 | - | – | |
| Phobius | 357 | 378 | 22 | - | – | |
| Phobius | 379 | 386 | 8 | - | – | |
| TMHMM | 385 | 403 | 19 | - | – | |
| Phobius | 387 | 405 | 19 | - | – | |
| Phobius | 406 | 416 | 11 | - | – | |
| TMHMM | 413 | 435 | 23 | - | – | |
| Phobius | 417 | 437 | 21 | - | – | |
| Phobius | 438 | 448 | 11 | - | – | |
| TMHMM | 447 | 469 | 23 | - | – | |
| Phobius | 449 | 467 | 19 | - | – | |
| Phobius | 468 | 472 | 5 | - | – | |
| Phobius | 473 | 493 | 21 | - | – | |
| TMHMM | 479 | 501 | 23 | - | – | |
| Phobius | 494 | 521 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0340500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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