Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0341400 |
| Transcript ID | LotjaGi4g1v0341400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA modification GTPase MnmE; TAIR: AT4G02510.1 translocon at the outer envelope membrane of chloroplasts 159; Swiss-Prot: sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic; TrEMBL-Plants: tr|G7JLH6|G7JLH6_MEDTR 50S ribosome-binding GTPase; Found in the gene: LotjaGi4g1v0341400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72120236..72123976) extracted from Lotus japonicus Gifu genome v1.2.
ACTTTCTATGCCGGGAACATTAGCTTCCAAAATGTCCAACATGAAAATACCCTTCCGGTTTTAGACCCTCGGAAGCAACT AGTCCGACTCAAGTAGGACATTATAGTATTTTACTACAATAAAGAGCGTGAGAAAATTTGAATGATGAGAGGAAAATGGC TTTTTAGGGCCCAAACAGATTTGTAAGCCCAAAATACGAGCCCATTGTTGAAAGGTAAGTGCTTTGTTGACCCAAACAAA AAAGGAAAGTGGTTTCTTTGAAATCTTCGCTTCGCTCTGTTTCTGTGGGTTGCTCTTTCTCTCTCCAACCCACCACCCAC CGCGCATGGCTTCAAATTCAGAGGCTGTTGCCTCCGTCACCGGCAGCGAGGGCCTTCTTCAACGTTCCTTTTCCATTCGA GCTCCTCTTACCGTTGACGACTCTGATTCTGATTTCGAAGTTTCAAGCGACGCCACACTCTCTGACACCGCATCTCACTC CGACTCCGACGATGACCCCCAAACGCAAAACCCTCCGGTAGCTGAGGCTGACCCAGAAGCACATTATCATTCCTCTGAAC AAGAATATGAAGAAGAAGGGTCTTTTGAAGCTGATGAGTACTCCCCTCTTGTGGAATCACCTGGTTCGCATGGTGGTATT CCATTGCGGGTTGCGCCTTTTGCTCAATTGTCTACCTACGACGATGACACGAGCAGTGATGGAATGTCTAGTGCTTCGAG AATGGCGGAGGATTCTGTTGGTGTGCACAGGCTCAAGGTGCGGAACGTGGATGATGAAGAAGATGATGATGATGCTGAGA CTGAGACTGAATTTGAAGCAAATGAGCTGGCGTTTTGCAGTGATTCGGGTTCTGATAGTTACAGTGAAGCTGAAAATGAT GGTGCAGATGTTAGGATTGATGAGGTAGTGGCTGTGGATGAGCATGGTTTGGGTGAAGTTGTTGGAATTAGAGTAGCTCA GGATGGATACTCTACTTCAAACAATGCAGATGTGATGTCGCAGTGTTCGCAAGAAAGTGTGAACAATGAGGAATTTGGCA ATGTAAGAGGTGGATTTGAAGAATTGGAGAAAGATGGTAGGGAACTATATGAGGGAATTGCTACTGGGTTGATTGGAACT GATGTGAGGAAATTGGAGGTTGGCACCAATGACCCCACTGATATGGTGGAAGAAACTTCAATCATGGTTGATGACACTGG CTCATTGAAGTTCAATGCTGAGGACTATGACAACATTATTATAATGCCGGCACAGATTACAAGTTTTGGCTATCTACAAG AACAAACTTCCCAAATACATAGCATGGAAGATGGACCTGCATCAGATGCATTTGCTGAAAATATTGAATGTTGCACAACA ACTGCAAGGGGTGAAACACTAGACCCTGAGTTGGAGTTTGATGTCATCGATGATTTAATAGTGCCTCAGAATGCTTTAAG ATCAGAAAGCGTGATAGAGGCTAAGGACAAAATTGTTGTTGATCTTGTAGTGCCAGCAAATGGAAGTCAAGGTGTTTCTT CTGATCAAGAGAGTGAGTGTGAGAAGCTGGTAAACACAACTACATCTCTGATCGACTCAAAAGCCGAATTGCAAGATCCC TCTGCTGATCTTGAACCTAGCAATGATGCTTGTGAAGGTAATGTGATTGAGGCTGTTGAGTCTTTTGAACTTTCTGATCC CATACTCCTTCAAGAGTATGCATATTTAGAAAATGATTTGTCTAGAGCAGTTTTAGGTGTTGTTCAACAAGATGAGCTGT TTTCTGATTACCATCCACATGAAAATGTTGAAACTCATAGCTTAGGAGACACTTTGTTAAAAATAGTAAGTCAAGAATCA AAAAGGGATGATGGTTCTGCTTCAGATGGATGTGTGGAACAGTTGATGTCAGTTGACCTTGACCAGTTCAGGGAACACAT TTCAGCTCTCTCTATTCTTTTGGGCTCCTCCAAAGGTTCTGAAAAGAATTCTCTAGGAGAACAGATTGTCAGGAGTTCAC ATGGAGGAATGAACTTAGCAAATGATGATGTAAAAAGTCAATTAATCTATGTTGATGGTGGTGGTGAATTAGATGGCAAA GTTACATTCACTTATGCTGATGAATCTAGTGTTATCTTTCTTAAAGATCCAGCTTATTTTAGTTCCTCACCGCATTATGA TGCTCAAATTGAATTCCAGCACAACATTAGTGAACAGGAAGGGGAAACAATACAGAAGATACAGACTATAAGTGTGAAAT TCTTGAGGCTTGTTCAGCGAGTAAATTTGTCTTTTGAAGATTCCTTGGTTTCAAAAGTTTTATGCAGGTTGGTTGCGGAT ATCGGAAGGCGCTCACATCAAGAATTTGTCATTAGCTCAGCAAAAATATCTGCAATGATGCTTGAAGAAGATTGTCAAGA TGATTTAGACTTTTCCTTGAACATTCTAGTTCTTGGGAAAAGTGGGGTGGGAAAGAGTGCAACAATAAATTCTATTTTTG GTGATATGAAGGTCATGACCAATGCATTTGAACCTGCCACAACCTCTGTAAAAGAGATTTCCAGAACTATAAATGGAGTC AAGATTAGAATCCTTGACACCCCTGGTCTCAGGTCCTCTGTGATGGAGCAAGCTTTCAACAGAAAGATTCTGTCATCTGT AAAGAGGTATATGAAAAAGTTTCCTATAGATGTCATTCTCTATGTTGATCGAGTAGATGACCAAACCAGAGATCTAAATG ATTTACCAATGTTAAGGTCAATCACAAGATCTCTCAGTCCTTCAATATGGCAAAATGCGATTCTTACTCTGACTCATGCT GCTTCTACTCCTTTGAATGGACCATCAGGATCCCCTCTGAGCTATGAGCTATTTGTTGCTCAAAAATCCTATCTTGTTCA ACAATCAATGACCAAAGCAGTAGGTGATCTTTGTCAGTTGAGTCCAAGTTTCATTTGCCCAGTGTCCCTTGTCGAAAACC ATCCATCATGTGGATCTGGTGACTGTGTGCTTCCCAATGGTCTTAGATGGAGAAGCCAATTATTAGCTTTGTGTTTCTCT CTTAAGATCCTATCTGAAGCGTCTTCTGCTCCAGGACCTCAATCTCTTCTTGATCATTGGAAGCAATATTTTTTGGAGGA CCAGCCTCAGCCTCTGTGCCATCTAGTTTCTTCTTTGTTGCGGTCTCCTGCTCATCTAAAATTCTCTGCCAATTGGAAGT GACTTAGATGCTCCCTTGGCAAATGATTTTAATTGAATATGAGAATGAATTTAACAACCATTCAGCTAGTCTCATGAAAA TGGTAATTTGGTGGAATCTCATGAATGGTTGTTGAAGCCCCCCGCGCAAGAAATAGTGTGGAGAAGAGGTGAAAGGATTC TGGCTCATCATGAACTGAAGTCTTGCGGAGAGTCCGGAGGAGAGGTATCATCGATCATGTTTATTTCACACGACACTCCC GTCTTCCTTTGAGAGAGAAATATGGTCTCTGATTTCACTTCCCAGCTTTTTGTAATGTCAACTATTTATAGTCATGACTA GGATGTAGTATGGTAGCTTTCCTCATGATTTTCCTGTTCAAACGACAAATAATGAAATGAAAGAGCTAATTTTTCCTGTC AGATTTTCTTGAAAAACCATATGTGGGATCTTTTTAAGTTTCCATAAAGATATTTAACCTGGAGTTTTTATTGTTAACTT AATTCTTTTATTCTAGAAAAACTTTAATAGACACTTTATAAGACGATTACACACTAAAAAT
CDS sequence (LotjaGi4g1v0341400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAAATTCAGAGGCTGTTGCCTCCGTCACCGGCAGCGAGGGCCTTCTTCAACGTTCCTTTTCCATTCGAGCTCC TCTTACCGTTGACGACTCTGATTCTGATTTCGAAGTTTCAAGCGACGCCACACTCTCTGACACCGCATCTCACTCCGACT CCGACGATGACCCCCAAACGCAAAACCCTCCGGTAGCTGAGGCTGACCCAGAAGCACATTATCATTCCTCTGAACAAGAA TATGAAGAAGAAGGGTCTTTTGAAGCTGATGAGTACTCCCCTCTTGTGGAATCACCTGGTTCGCATGGTGGTATTCCATT GCGGGTTGCGCCTTTTGCTCAATTGTCTACCTACGACGATGACACGAGCAGTGATGGAATGTCTAGTGCTTCGAGAATGG CGGAGGATTCTGTTGGTGTGCACAGGCTCAAGGTGCGGAACGTGGATGATGAAGAAGATGATGATGATGCTGAGACTGAG ACTGAATTTGAAGCAAATGAGCTGGCGTTTTGCAGTGATTCGGGTTCTGATAGTTACAGTGAAGCTGAAAATGATGGTGC AGATGTTAGGATTGATGAGGTAGTGGCTGTGGATGAGCATGGTTTGGGTGAAGTTGTTGGAATTAGAGTAGCTCAGGATG GATACTCTACTTCAAACAATGCAGATGTGATGTCGCAGTGTTCGCAAGAAAGTGTGAACAATGAGGAATTTGGCAATGTA AGAGGTGGATTTGAAGAATTGGAGAAAGATGGTAGGGAACTATATGAGGGAATTGCTACTGGGTTGATTGGAACTGATGT GAGGAAATTGGAGGTTGGCACCAATGACCCCACTGATATGGTGGAAGAAACTTCAATCATGGTTGATGACACTGGCTCAT TGAAGTTCAATGCTGAGGACTATGACAACATTATTATAATGCCGGCACAGATTACAAGTTTTGGCTATCTACAAGAACAA ACTTCCCAAATACATAGCATGGAAGATGGACCTGCATCAGATGCATTTGCTGAAAATATTGAATGTTGCACAACAACTGC AAGGGGTGAAACACTAGACCCTGAGTTGGAGTTTGATGTCATCGATGATTTAATAGTGCCTCAGAATGCTTTAAGATCAG AAAGCGTGATAGAGGCTAAGGACAAAATTGTTGTTGATCTTGTAGTGCCAGCAAATGGAAGTCAAGGTGTTTCTTCTGAT CAAGAGAGTGAGTGTGAGAAGCTGGTAAACACAACTACATCTCTGATCGACTCAAAAGCCGAATTGCAAGATCCCTCTGC TGATCTTGAACCTAGCAATGATGCTTGTGAAGGTAATGTGATTGAGGCTGTTGAGTCTTTTGAACTTTCTGATCCCATAC TCCTTCAAGAGTATGCATATTTAGAAAATGATTTGTCTAGAGCAGTTTTAGGTGTTGTTCAACAAGATGAGCTGTTTTCT GATTACCATCCACATGAAAATGTTGAAACTCATAGCTTAGGAGACACTTTGTTAAAAATAGTAAGTCAAGAATCAAAAAG GGATGATGGTTCTGCTTCAGATGGATGTGTGGAACAGTTGATGTCAGTTGACCTTGACCAGTTCAGGGAACACATTTCAG CTCTCTCTATTCTTTTGGGCTCCTCCAAAGGTTCTGAAAAGAATTCTCTAGGAGAACAGATTGTCAGGAGTTCACATGGA GGAATGAACTTAGCAAATGATGATGTAAAAAGTCAATTAATCTATGTTGATGGTGGTGGTGAATTAGATGGCAAAGTTAC ATTCACTTATGCTGATGAATCTAGTGTTATCTTTCTTAAAGATCCAGCTTATTTTAGTTCCTCACCGCATTATGATGCTC AAATTGAATTCCAGCACAACATTAGTGAACAGGAAGGGGAAACAATACAGAAGATACAGACTATAAGTGTGAAATTCTTG AGGCTTGTTCAGCGAGTAAATTTGTCTTTTGAAGATTCCTTGGTTTCAAAAGTTTTATGCAGGTTGGTTGCGGATATCGG AAGGCGCTCACATCAAGAATTTGTCATTAGCTCAGCAAAAATATCTGCAATGATGCTTGAAGAAGATTGTCAAGATGATT TAGACTTTTCCTTGAACATTCTAGTTCTTGGGAAAAGTGGGGTGGGAAAGAGTGCAACAATAAATTCTATTTTTGGTGAT ATGAAGGTCATGACCAATGCATTTGAACCTGCCACAACCTCTGTAAAAGAGATTTCCAGAACTATAAATGGAGTCAAGAT TAGAATCCTTGACACCCCTGGTCTCAGGTCCTCTGTGATGGAGCAAGCTTTCAACAGAAAGATTCTGTCATCTGTAAAGA GGTATATGAAAAAGTTTCCTATAGATGTCATTCTCTATGTTGATCGAGTAGATGACCAAACCAGAGATCTAAATGATTTA CCAATGTTAAGGTCAATCACAAGATCTCTCAGTCCTTCAATATGGCAAAATGCGATTCTTACTCTGACTCATGCTGCTTC TACTCCTTTGAATGGACCATCAGGATCCCCTCTGAGCTATGAGCTATTTGTTGCTCAAAAATCCTATCTTGTTCAACAAT CAATGACCAAAGCAGTAGGTGATCTTTGTCAGTTGAGTCCAAGTTTCATTTGCCCAGTGTCCCTTGTCGAAAACCATCCA TCATGTGGATCTGGTGACTGTGTGCTTCCCAATGGTCTTAGATGGAGAAGCCAATTATTAGCTTTGTGTTTCTCTCTTAA GATCCTATCTGAAGCGTCTTCTGCTCCAGGACCTCAATCTCTTCTTGATCATTGGAAGCAATATTTTTTGGAGGACCAGC CTCAGCCTCTGTGCCATCTAGTTTCTTCTTTGTTGCGGTCTCCTGCTCATCTAAAATTCTCTGCCAATTGGAAGTGA
Protein sequence (LotjaGi4g1v0341400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASNSEAVASVTGSEGLLQRSFSIRAPLTVDDSDSDFEVSSDATLSDTASHSDSDDDPQTQNPPVAEADPEAHYHSSEQE YEEEGSFEADEYSPLVESPGSHGGIPLRVAPFAQLSTYDDDTSSDGMSSASRMAEDSVGVHRLKVRNVDDEEDDDDAETE TEFEANELAFCSDSGSDSYSEAENDGADVRIDEVVAVDEHGLGEVVGIRVAQDGYSTSNNADVMSQCSQESVNNEEFGNV RGGFEELEKDGRELYEGIATGLIGTDVRKLEVGTNDPTDMVEETSIMVDDTGSLKFNAEDYDNIIIMPAQITSFGYLQEQ TSQIHSMEDGPASDAFAENIECCTTTARGETLDPELEFDVIDDLIVPQNALRSESVIEAKDKIVVDLVVPANGSQGVSSD QESECEKLVNTTTSLIDSKAELQDPSADLEPSNDACEGNVIEAVESFELSDPILLQEYAYLENDLSRAVLGVVQQDELFS DYHPHENVETHSLGDTLLKIVSQESKRDDGSASDGCVEQLMSVDLDQFREHISALSILLGSSKGSEKNSLGEQIVRSSHG GMNLANDDVKSQLIYVDGGGELDGKVTFTYADESSVIFLKDPAYFSSSPHYDAQIEFQHNISEQEGETIQKIQTISVKFL RLVQRVNLSFEDSLVSKVLCRLVADIGRRSHQEFVISSAKISAMMLEEDCQDDLDFSLNILVLGKSGVGKSATINSIFGD MKVMTNAFEPATTSVKEISRTINGVKIRILDTPGLRSSVMEQAFNRKILSSVKRYMKKFPIDVILYVDRVDDQTRDLNDL PMLRSITRSLSPSIWQNAILTLTHAASTPLNGPSGSPLSYELFVAQKSYLVQQSMTKAVGDLCQLSPSFICPVSLVENHP SCGSGDCVLPNGLRWRSQLLALCFSLKILSEASSAPGPQSLLDHWKQYFLEDQPQPLCHLVSSLLRSPAHLKFSANWK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 26 | 108 | 83 | - | – | |
| MobiDBLite | 118 | 137 | 20 | - | – | |
| MobiDBLite | 142 | 164 | 23 | - | – | |
| PANTHER | 373 | 957 | 585 | 7.2E-300 | – | |
| PANTHER | 373 | 957 | 585 | 7.2E-300 | – | |
| Gene3D | 676 | 919 | 244 | 1.9E-47 | – | |
| SUPERFAMILY | 690 | 825 | 136 | 1.3E-18 | ||
| ProSiteProfiles | 695 | 935 | 241 | 37.628 | ||
| Pfam | 698 | 829 | 132 | 1.8E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0341400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…