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LotjaGi4g1v0344300.5

Overview

Field Value
Gene ID LotjaGi4g1v0344300
Transcript ID LotjaGi4g1v0344300.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|A0A072USG4|A0A072USG4_MEDTR Cullin 3B; Found in the gene: LotjaGi4g1v0344300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:72426109..72426572) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGGAGGATCAAGGTATAATTTAATTTAAAAATAGTGGTTCAATCTCATCTCAATCTCTGCTATTCACCGGTTTTTGA GTGGAATTATGGCACGTTTTGATGCAGATTCCTCTTCCTCCTGTGGATGAAAAGAAGAAAGTAATTGAGAATGTTGACAA GGACAGACGATATGCCATTGATGCCTCACTTGTGCGTATTATGAAGAGCCGAAAAGTTTTGGGGTACCAACAGTTAGTTA TGGAATGTGTTGAGCAGTTGGGTCGCATGTTTAAGGTTCACACTTGTTCACTTTCCTAACATCATCTTGTGTCTTTTTTG GTCAAATACTAATTTTTTTTTATATCTTATATACTTGTCCAGCCTGATGTCAAGGCAATTAAGAAGCGGATTGAAGATTT GATTTCTCGAGACTACCTGGAAAGAGAGAAAGACAATCCAAACATGTTCAGGTACTTGGCTTGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0344300.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGAGGATCAAGATTCCTCTTCCTCCTGTGGATGAAAAGAAGAAAGTAATTGAGAATGTTGACAAGGACAGACGATA TGCCATTGATGCCTCACTTGTGCGTATTATGAAGAGCCGAAAAGTTTTGGGGTACCAACAGTTAGTTATGGAATGTGTTG AGCAGTTGGGTCGCATGTTTAAGCCTGATGTCAAGGCAATTAAGAAGCGGATTGAAGATTTGATTTCTCGAGACTACCTG GAAAGAGAGAAAGACAATCCAAACATGTTCAGGTACTTGGCTTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0344300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRRIKIPLPPVDEKKKVIENVDKDRRYAIDASLVRIMKSRKVLGYQQLVMECVEQLGRMFKPDVKAIKKRIEDLISRDYL EREKDNPNMFRYLA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11932:SF139
1 94 94 2.7E-55 –
PANTHER
PTHR11932
1 94 94 2.7E-55 –
CDD
cd17526
2 28 27 0.00412962 –
Gene3D
G3DSA:1.10.10.10
2 94 93 4.6E-31
IPR036388
SUPERFAMILY
SSF46785
8 94 87 9.98E-28
IPR036390
SMART
SM00884
21 88 68 5.4E-33
IPR019559
Pfam
PF10557
24 86 63 7.1E-26
IPR019559

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0344300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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