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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0346100 |
| Transcript ID | LotjaGi4g1v0346100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT3G06390.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6SVQ5|CSPL7_SOYBN CASP-like protein 1D2; TrEMBL-Plants: tr|I3SHN8|I3SHN8_LOTJA CASP-like protein; Found in the gene: LotjaGi4g1v0346100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72560820..72566303) extracted from Lotus japonicus Gifu genome v1.2.
ATAATTTCTCCCACCAGCTAGAAATTAGAAAATCACTACACACAAGAAACCATTTTCAAATGCGGGTGTGAAATGTGATG GAGCCATGTCTATCCAAATCCGAATCAAAGTCAGATATGGAACGGAGCTGGCACCCAAAAATGTCAATAGTGTGAAACCT TGTTGAAAGTAAGCACATCAAAATATCAAATGTTTTTATATTAACTTTTCGTGTAAACGATGAGAATTGTTCATATCAAA TATGCTAACAAAACATGTAAGCTTGTATATTGATGCAGTTGGTTTAAGTGACACATGTTTAATTTTTCTTAAGTAATATC TCATGTTTAAATTTTGTGTATAAAATTAAATCTCTCTCAAAGAGCTGGTCTCACCGGAATGTGAATGTTTTCGACTTGAA TAATATTATTTTCGGTGGAGGATACTTGTCTTAAACTTAAATATAGACTACTAGCTGTATGGCTCATCAAATTGATACAC ACCAACTAGTTAACAAGCAAGTGTTCAAACGTGCAGGAAACTTCAACCATTTGGTTTTTACACCTTTCCCGTTCATTTGG CTCTCCCCATGAAGTGTCCAAATCCATCTATATATATGTGATTGTTCAACTACCCTTATCCTTCACCACTGTGTTTTCAA ATTCTAGCTATTACTACCTTGCATTAAGACCAAGCTAACAATCAATCTAGCTTAATTTTGAGAGCAAAATTGAAACATGG CTTCTAGGGACAAGACAGAGGACCCTGAGCACAGATTATCTTCAACTCCAATTCCAGCTCCTGCTGCTGGTGTTGATTAC TTTCACTTTGATTTGATCCTAAGGTTTCTCTTGTTTGCATCATCACTGGTTGCAGTTGTGGTCATGGTTACTAGTAACCA AACTGAATATGTACCTTTGCCTAGGCCAGCCAAGTTCAGATACTCACCAGCTTTTATGTAAGTTCACAGTTTTTCAAATC TTTAGTAGATTCATTTACTATGTTTATTATAATCCTCTTTATTTTTTTAAGCAACAAAGTCTTATAACTGTGTGACATGT AATATGATATGCAAACAGATATTTTGTGGCTGCATTCTCCGTTTCTGGACTCTATAGTATCCTCACAGCTCTTGCATCAC TCTCTGTCATCCGAAAACCTGCCCTTAAAACCAAGTTCCTCCTCTATTTTCTGTTCTGGGATGCGGTAATGAATCAATTA ACCTCTCTACTCTTCTCAATTTACTTGCTTTACACATCAAACATGACAAATAAGCAACTTATATATGCATGTTTTGATAA ACTTGTTTTTCTCATAATCAATTATGGCACTCAGAAGCTACGTACAGAAGCTTCTATCCGTAATGGATTTTGACTTTAGA ATCAAATATAGTAGAATTTTCAAACATGTACTTAATTACTGTTCTTCTTCGCAGCTGATATTGGGGATATTAGCTTCAGC AACAGGCACAGCTGGGGGTGTGGCATATGTGGGCTTGAAGGGAAACAACCATGTGGGTTGGCATAAAATTTGCAACGTCT ATGATAAGTACTGTAGGCATGTTGGTGGCTCCATTGGAGTGGGTTTGGTTGGAAGCATTGTGTCGGTCTTGCTCGTCTGG CTTTCTGCTTTCAGTCTTCATAGTCGAGTTCCCCAATAGGTGGAAGGAACAAGGATCACTCTGAACATTCATGCATTCAT TTCTTAGTAACATTGTTTACAAATATAGTCAGTGTCTTTAAGTATTTGTTATAGTGTGTAGATGACTAGTGTGTTTCCGA ATGCGGGGGATGATTATTTTTGTAAATGTGTGTTTTCCATGAAGGACCTTTGGTTGTATTCTACATTCTATTTATGTCAT ACATGATTTGCAATTATCCTGCAAAACTTTAATAGAATAAATAATTCACCAATGAAACGTTTAAATAAGAACTAATGATT GTCCAAACCAGCCTCTCCACCTACTAGTCTACTACATGTTCGGATCAACTTCTTTTACCTTAGAATCGATTTTGTAATTC AGAAACTACTCACAGAATATTCTTTCCATAATTGATTTTAGCAGGTAATGGCTATGAACTTGAGAATAATTAACATGACA GGTCAATTTGTGGTGGAAGCGTATATAGAAAGAAAAAAAGAGTACTAGATCAGACTAACAAGTAACATTGCCAAAACCTT CATGCCTTCTTTTCATTGTATGAAGTGCTTCCATAAAACAACTCAGTGAATTCTCTGTTATGGACAATGAGGATATGGAC TTTATACATATGCCATGTGAAGAAGAAAAGAAGCATTATAACTAGTTATTCTTCCAGTCTTTGATGATACATACTATACA TGTATTATTGCCAAAGGAATTTAAAAAACAAGAATTATTTATACACACAGTAATACTTGGATATTAGCATGGAGTCATTC TATTCCTACAACTAATTTTCATAAGAATGAGTAGAAAACAATTGTGGGAATAGAATTTCTCATCAGCATTAGTAGTTGAT ATGATCTCCCTATGGCTATTGCAATCTGTGGGTAAGCTGGTAGGACCAAGATGTTGTGGTATGACCAACAGCAGAGATCT GAACACGTAAAACCTCGTGAATAGTACCTCGGCGAAGCACCCCCAAAACGTTCCCATCATCTTGTGTTGCTAAATCAGCC AAAGAAACCCAACGAGAATGAAACTCATCCCTCATACGGTAGCCATGTAACCATCTACCAAGTTTCCACCACTTGACAAC CACGCGCCGATCTGAGATCTCACAAGTGCGAAGGACTTCTAAAAGATTTTCACCCTGCCAACAAAGACACTTGCAGATCA AATACATATCAGTCTGGTCTAGCTTAATACTTTAATGTACATGTGCATTCCATCATCAAGGCTTAAGTGTAACTTGATCA GAAAAACAACATAGATCAGCCATGTTCAAGCATCCATGTAACTTGATCCATTTGGTTATTTAATTCCAAGATCGAAATCC ACATAAATATGAGGCAGGTATCTATATAATTAAATATGGGATGCACTGCACTGTTTCATACAGCAATTTATATGTAAAAG CCTCGTTGAGAAGAGGGAAAATATGTGATGATGGTTCAACTTTATCCTCTTAATTTCTCATATTTCTCTAAAAAAGTCAA GGCTTGGTAGTTGTTGTCCTCAAACAAAAAGTCAAGCAATGAAATTCAAAGGTAAAGAATAAATGTATGCAACTTATTTC TGAAGCTTCTAAAGGTGCAAATTTGGGAACAGAGTGACAAATGACAAAAGATTGCACTTTTAGACGGCACCATCTCTTAC TTACAAGAAACAATGTACTTTTGAGCATGTGTTAAAAGTATCTTTTTTCTTAATCATATTTGTTTTAAGGTCACCACAAC AATTACCTTACGATGTACATAAACTGACCAAGAGATATTTTATTTGTTGGACAGAAGAACATAAATAACAATGGAAAAGT TGAAGCAAGGAAAAAGACAAGTGACTTTCTTAATTAAATACCGGCAAGGAAAAGAAGTTCTGCACAAATGGTTAGCAGAG AACATGAAATGAAGCAGATGTTTTGGATTCAGTTGGAAAGTGTGAAACCATATTTCAACTGGTCATGATCTTTTCTTTCT ACTAGCTGCAGCCCTGAAGCAAACAAAATAAATCTAACGGAAGCGCATGCATAATTGACAATATGCCAAAGATAATGTTT GGTAGAGCTTGTGCATTGTGGTTCTCCCATTTGCCATCAAGCAGCACAAAGTTGAACTATGACGAAGCAATTACCTTTTA AAAAAATATGTGGGATCTCAAAGAGGAGTTTGATTAGTTAAAATGCAAACAAAGTAAATGAAAATAGGGTGGAAGAGGAT GGAAATACCCTTATGCCAAGGCTTGAGAGGCAGTAATGCAGTCCAACCAAGTTAATCAGCACATTCATTTTAGGGTTGAA CAGGTACCTCTGTATGTCTTCAAAACCAAACCTCAAACCAACCAAGGTATCAACGGCTTTCAGATAGTCCCCAACCTCAA GTGATTCAGAAGGTGAGCAAGCTTTCAGAAACATCTCAACTGTCCTTGCCCTAAGTCCCAACTCGACGTGCCTCTCGAAG TAAAACTTTCTCCACTTCTGTAATCCAAAATCCAAACATTTATTCACAACATAACACAATAACAGTAACACTACTCAAAT CTGCCCAAAAAAGATAATGATGTACACACACACACACACACACACATACTGCCACCCCACCAAAATAACGATAATGTAAG AACAAGGGACCAAGTACTTTCCTTAACTCTAAGCCTAAAACATAGTTTAGGGTTAGATAGCAAGTTTTAAAAAATGCAAC AGAATCTCTTTTGTGCACAATCTGTAATTCATAGCATGTTTGAGTCATCTCATTTTATCGTTAATTCTGACATCCAGACT TGGTGTGTCTCCATGTTTAGGAGCCTTAGAATCAATTCTCATGGACCACAATCACTTTTAGGTGGTTAAATAGATATTTA GCAATCCACTTAGAGAATTGATTTCCAACCAAAAATTCAATAATGTGAAGCTATAGAGAGTAGCTCCTTCCTCCTGCAGT TGACATAATCTTTCATAACTGGATTTCACAACATTATCCTATAGAAATCACTTTTCCCATAAAAGTATCAAAACATAAAT CACTTCACTTTCAAGTTTCAACTCACTTTTAGTTACAATAATTAATTTTAGCAAAATCAATTCTATCCAAAATCAATTCT GACAACCCTGATCCAAACACGCACACAATAAGCTTCTCTCAAGAATCAATTTTGGTTTTATAATCAATTGTAGAATGATT TCCAAACATACACTCAACTTACGCGATCCTAAGTGGTGAATAACTGAACGAAACATGGTATACTATGAATGATTACCCAA AGGCAATAGGGGAAAAAGAACCAAACTTTGGTTAAATAACAAACTGGGTATTCCTAAAAAAACAGGAAAATATACCTTGG GATTGGGAGAGGTAGCAGAAGTAGAAGAAGAAGACGAAGACGATGATGATGGTGCGAGTGCGAGTAAAGGCCATCTGGTT CTGACAAGAGACTCCCAAATGCAATCAGAGAAGCAAAGGTCTCTGCAGAATCTGGAACAACAACCTAAGGCACACAAATC CCGCACCTAGGAAAACGGAAAACAAATCAACAGGGTCAAGATAAACAAATGAAATCGAATCTTTCTCACGCCATGCAAAT TGAAAATCGAACCTGAAGAAGTGAAGTAATCTTGAAGGTAACATCTTGAGGAAGTGATGCGAGTACCGGAACAGGATCCA GCTGCTTATCTTTGCACATGGTTTGCAATTGCAATTGCGATTGAAAATCAAAGGAATTCTAAGACTTCTCTTGTCTTGTT TCTTGTCCCTTTGCAGTTTCAATCACATGGCGCCACGAAACAAACCCATGTCATTTCTGATCTTAATTTTCTCAATAATG GGATTTTTTTTGGACAATCAAATGAAATCAATATATAATTTTTA
CDS sequence (LotjaGi4g1v0346100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTAGGGACAAGACAGAGGACCCTGAGCACAGATTATCTTCAACTCCAATTCCAGCTCCTGCTGCTGGTGTTGA TTACTTTCACTTTGATTTGATCCTAAGGTTTCTCTTGTTTGCATCATCACTGGTTGCAGTTGTGGTCATGGTTACTAGTA ACCAAACTGAATATGTACCTTTGCCTAGGCCAGCCAAGTTCAGATACTCACCAGCTTTTATATATTTTGTGGCTGCATTC TCCGTTTCTGGACTCTATAGTATCCTCACAGCTCTTGCATCACTCTCTGTCATCCGAAAACCTGCCCTTAAAACCAAGTT CCTCCTCTATTTTCTGTTCTGGGATGCGCTGATATTGGGGATATTAGCTTCAGCAACAGGCACAGCTGGGGGTGTGGCAT ATGTGGGCTTGAAGGGAAACAACCATGTGGGTTGGCATAAAATTTGCAACGTCTATGATAAGTACTGTAGGCATGTTGGT GGCTCCATTGGAGTGGGTTTGGTTGGAAGCATTGTGTCGGTCTTGCTCGTCTGGCTTTCTGCTTTCAGTCTTCATAGTCG AGTTCCCCAATAG
Protein sequence (LotjaGi4g1v0346100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRDKTEDPEHRLSSTPIPAPAAGVDYFHFDLILRFLLFASSLVAVVVMVTSNQTEYVPLPRPAKFRYSPAFIYFVAAF SVSGLYSILTALASLSVIRKPALKTKFLLYFLFWDALILGILASATGTAGGVAYVGLKGNNHVGWHKICNVYDKYCRHVG GSIGVGLVGSIVSVLLVWLSAFSLHSRVPQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 32 | 32 | - | – | |
| PANTHER | 16 | 188 | 173 | 9.7E-75 | – | |
| PANTHER | 16 | 188 | 173 | 9.7E-75 | – | |
| Pfam | 31 | 171 | 141 | 1.9E-36 | ||
| TMHMM | 33 | 52 | 20 | - | – | |
| Phobius | 33 | 52 | 20 | - | – | |
| TIGRFAM | 33 | 183 | 151 | 1.6E-43 | ||
| Phobius | 53 | 71 | 19 | - | – | |
| Phobius | 72 | 95 | 24 | - | – | |
| TMHMM | 72 | 94 | 23 | - | – | |
| Phobius | 96 | 106 | 11 | - | – | |
| Phobius | 107 | 137 | 31 | - | – | |
| TMHMM | 107 | 129 | 23 | - | – | |
| Phobius | 138 | 162 | 25 | - | – | |
| TMHMM | 160 | 182 | 23 | - | – | |
| Phobius | 163 | 184 | 22 | - | – | |
| Phobius | 185 | 190 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0346100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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