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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0346500 |
| Transcript ID | LotjaGi4g1v0346500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sodium/hydrogen exchanger; TAIR: AT3G05030.1 sodium hydrogen exchanger 2; Swiss-Prot: sp|Q56XP4|NHX2_ARATH Sodium/hydrogen exchanger 2; TrEMBL-Plants: tr|A0A1J7HZV2|A0A1J7HZV2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0346500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72575128..72578811) extracted from Lotus japonicus Gifu genome v1.2.
GTTGGAACAATGAATCTATCACAGCCCTTAGTTGAGAAACTAACAACATTGATGACCTCTGATCATGCTTCAGTTGTCTC TATCACTCTATTTGTTGCTCTTCTTTGCACTTGCATCATAATTGGTAATTTGTTGGAGGAGAATCGTTGGATCAATGAAT CCATCACTGCCCTCCTCATTGTGAGTATTCACTTGATCACCAATCAATCTTGATATCTTTCCTTCTTCCGCATGGATGGA GATGAATTTGAAAGTTGATATTTTTCTTTTTCATGGTGGCAGGGTCTCTGTACTGGGGTTCTTATACTGTTTACAACCGG AGGAAAAAGCTCTCATATATTAGTTTTCGATGAAGATCTTTTCTTTAACTACCTTCTCCCTCCCATCATTTTCAATGCTG GGTAAGTCAATTGCATGCTTTTACCAATTCACTTCTTTTCTTGTTGTACTCTTTTTGCAGCTTCCTTTTCCAACTTCTTT GGAATATATACTATTATAGCCAGCCAGTTTACCATTTAGGGCCGGTTTAGAACTTATTTAAGTTCATCTTATATCATAAG CTCTGTAAATGGCTTATGATCTGACTTTTCTATAAGCTGTTTTGAGCTTATTTTATATGCTGGTCGGATTAGGTTATGAC TAATCACTCATACCAGCCCACTTAGAACTATTTTATACTTATTTCAATAAACTTCTCAAATTAGCTTATGAATGAGCGCT TATGACAATAAGTGCTTAATTAAGTTATTTAACCAAATGGAAAAGCAATAGCTATATATTCTATGTACTGGTCTGACTTC AATTTCTCTGCTGTTCTTCATCCATCTTAGGTTTCGGGTCAAGAAGAAACAATTTTTTCGCAACTTTATGACCATAATGC TCTTTGGTGCAATTGGTACATTGATATCATTCTGCATCATATCATTAGGTAATTTAAGTAACCTTCACTTTCTAGCCTGA AGAAAATTGATCAATTTTCTCTTTGAATAGTCAAATCAATTGATATTGAAATGTTGAAGTAAATCTCCTTCTTAAATCAC AAATTTGTATCAATTCTTATTCAATGGTCATTGCTTTGTGATAATTTGGCTCAATTTGTTTACAAATCTTCATTATTTTG CCTAGGTGCCATACACTTTTTTGAGAAACTAGGTATTGGTTCCCTCAGTATTGGAGACTATCTAGGTATGACTATGTTAT AAATAGTTTAATGTTTGACTTACCAGAAAATTTGGAACTTTACCAAATACTAACCTGATTCTACTGAATGCAGCAATTGG AGCAATATTTTCTGCAACAGATTCTGTTTGCACATTGCAGGTACAAATAAATTCTCAAACACACAGATTAGGACCCTTCT TTTCTTCTTTCATTTTTATGATCTTTTCCTCTTTTTATATGCATCAGGTTCTTAATCAGGATACAACACCTTTACTATAC AGCCTGGTCTTTGGGGAGGGGGTAGTAAATGATGCTACCTCTGTAGTACTCTTCAAAGCAATTCAGAATTTTGACCTCTC CCACATTGACTTAACCACTGCTTTACAATTAATTGGAAAATTTTCATATTTATTCATTGCAAGCACTTTACTTGGAATCT TGGTAAGTTTTTCTAACTCTGTTCCCTTGTCTCTTCTGCTGTTTTATTTGGACTAAAATAACTTTTTTTTTGTCAGGTTG GATTGCTTAGTGCATACATTATAAAAAAGCTTTATTTTGGGAAGTTGATAAGGTTAATTTCAGCATTTTTCTTTTGAATA TAAGAAATAATCTTAGCATATGTGAATATGTGATGATACATTGTTACTGATTTTCTAATTCAATTTTTGATAAATGCCAG GCATTCTACCGTGCGTGAGGTTGCTCTCATGATACTCATGGCATACCTTTCATATATGCTAGCTGAAGTAAGATTTTTTC CCCTCTGAAATTGCACTTCTGATTACTCTAATTCCAATTCTAATCTCTTTTATTTCTTTGGCAGCTGTTTTCTCTAAGTG CCATTCTGACTGTGTTCTTCTGCGGCATTGTTATGTCTCACTACACATGGCATAATGTGACAGAAAGTTCAAGAGTGACA ACCAAGTACTTAAAATAACATATCTGCATTAATAAATTAGTAAAAAAAAAATTCATGTTTAGAAGATTGCTACAAAATTA TTAGTACTTCACTGATTTTTACTACCCTGTTGCAGGCATGCTTTCGCTACTTTGTCATTCATTGCTGAGATTTTTCTCTT CCTTTATGTTGGGATGGATGCACTAGATATAGAGAAGTGGAGAATAGTAAGTCAAAGGTAAAAAGAAAAGAAATGGATGT GAAGTTGAACTGCATTGAAATTACTTTGTAAAATACTAGATGTAACGATAAGATATGCAAGAAGAGGTAGTTACTTCTCA TGATTTCTGTCAAACAACACATTAACATAGCCACATCAGCATTTCTTGCAACTTTCTTTCCTAACATATAGCTTTACTGC TTTGTGAAATGTGAGACTAACACTTTTGGTGTCTTCTTCATTAGCCCAAGAAAATCAATTGGGGTGAGCTCATTGCTGTT GGCACTTATCCTAGTGGGAAGAGCTGCATTTGTTTTCCCTTTGTCCTTCTTATCCAACTTGTTTACGAAGTCTCCATCTG AGAAAATTGAATTCAAGCAACAAGTATGTATGATCATTTTCCTATTAGACAAAAACTCTTAGATGCAGTTTTATACATGA TGTTTTTACTATTGTTCAATTAAAGCGCTACATATGAGCTAAAAAATGAGAAGGCGATGGAAGTCATCATATAAAAAAAT AAGCAGTACATAAAATATTGTATGAAAGCTTTGTCCTTTCCTATTCCATTTCAAGTCTTAATGATTGAGTCAATTGTTGT ATCACATTCCTTTGATGATTTTGTTTCCCAGGTAACAATTTGGTGGGCTGGTCTCATGCGTGGAGCTGTTTCCATAGCAC TTTCCTACAATCAGGTGAAGGAATAAAAAACTCATCACTTCCAATTTTACATCTGTATGAGTAAAGTTCTTTAGTAATCA ACTCTTATCTTTTTTTGTTTTTTCACATGCAGTTTACCAAGCTAGACCATACTAAGTTGAGTGAGAAAGCCATCATGATC ACTAGTACCATCACTGTTGTACTCTTCAGCACATTGGTTAGACTCAATTCTTTCCTTGATCAACTAGTAATTACGTTATA TCATAACTCATAACTCTTAACCCGATGAGTAATTATACATGGACATTTGTTTTTTAGTGGACATTCAATCATCATACAGT TTCACGGCATTCTGCTAGATTGTATGTTGATAGAATGTCGCGAAAAAAAAACGTATGTATGTCCTAGTAGCATTTTCGGA ACCAAAATGATCAGCACTTATGAAATATTATGCAGGTGTTCGGATTGATGACAAAGCCACTAGTGAGGTTATTGCTTCCT TCGTCGAAATACATACTCATCATACAATCCCCACCACCGACGCCAAAATCATTGACTCTGCCACTTCTTGGCAATGTACA TGATTCAGGTGACACCGAAAATGGGACTCAACCAAGCAACCTGCACCACTATTGGCGCAAATTTGATGATTCTGTCATGC GACCCGTCTTTGGTGGGAGGGGTTTTGTACCTTATGTTCCTGGTTCACCCGTTGAATAAAGTGTTCATCAATGGCGTTAA GTAA
CDS sequence (LotjaGi4g1v0346500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCTATCACAGCCCTTAGTTGAGAAACTAACAACATTGATGACCTCTGATCATGCTTCAGTTGTCTCTATCACTCT ATTTGTTGCTCTTCTTTGCACTTGCATCATAATTGGTAATTTGTTGGAGGAGAATCGTTGGATCAATGAATCCATCACTG CCCTCCTCATTGGTCTCTGTACTGGGGTTCTTATACTGTTTACAACCGGAGGAAAAAGCTCTCATATATTAGTTTTCGAT GAAGATCTTTTCTTTAACTACCTTCTCCCTCCCATCATTTTCAATGCTGGGTTTCGGGTCAAGAAGAAACAATTTTTTCG CAACTTTATGACCATAATGCTCTTTGGTGCAATTGGTACATTGATATCATTCTGCATCATATCATTAGGTGCCATACACT TTTTTGAGAAACTAGGTATTGGTTCCCTCAGTATTGGAGACTATCTAGCAATTGGAGCAATATTTTCTGCAACAGATTCT GTTTGCACATTGCAGGTTCTTAATCAGGATACAACACCTTTACTATACAGCCTGGTCTTTGGGGAGGGGGTAGTAAATGA TGCTACCTCTGTAGTACTCTTCAAAGCAATTCAGAATTTTGACCTCTCCCACATTGACTTAACCACTGCTTTACAATTAA TTGGAAAATTTTCATATTTATTCATTGCAAGCACTTTACTTGGAATCTTGGTTGGATTGCTTAGTGCATACATTATAAAA AAGCTTTATTTTGGGAAGTTGATAAGGCATTCTACCGTGCGTGAGGTTGCTCTCATGATACTCATGGCATACCTTTCATA TATGCTAGCTGAACTGTTTTCTCTAAGTGCCATTCTGACTGTGTTCTTCTGCGGCATTGTTATGTCTCACTACACATGGC ATAATGTGACAGAAAGTTCAAGAGTGACAACCAAGCATGCTTTCGCTACTTTGTCATTCATTGCTGAGATTTTTCTCTTC CTTTATGTTGGGATGGATGCACTAGATATAGAGAAGTGGAGAATAGTAAGTCAAAGCCCAAGAAAATCAATTGGGGTGAG CTCATTGCTGTTGGCACTTATCCTAGTGGGAAGAGCTGCATTTGTTTTCCCTTTGTCCTTCTTATCCAACTTGTTTACGA AGTCTCCATCTGAGAAAATTGAATTCAAGCAACAAGTAACAATTTGGTGGGCTGGTCTCATGCGTGGAGCTGTTTCCATA GCACTTTCCTACAATCAGTTTACCAAGCTAGACCATACTAAGTTGAGTGAGAAAGCCATCATGATCACTAGTACCATCAC TGTTGTACTCTTCAGCACATTGGTGTTCGGATTGATGACAAAGCCACTAGTGAGGTTATTGCTTCCTTCGTCGAAATACA TACTCATCATACAATCCCCACCACCGACGCCAAAATCATTGACTCTGCCACTTCTTGGCAATGTACATGATTCAGGTGAC ACCGAAAATGGGACTCAACCAAGCAACCTGCACCACTATTGGCGCAAATTTGATGATTCTGTCATGCGACCCGTCTTTGG TGGGAGGGGTTTTGTACCTTATGTTCCTGGTTCACCCGTTGAATAA
Protein sequence (LotjaGi4g1v0346500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLSQPLVEKLTTLMTSDHASVVSITLFVALLCTCIIIGNLLEENRWINESITALLIGLCTGVLILFTTGGKSSHILVFD EDLFFNYLLPPIIFNAGFRVKKKQFFRNFMTIMLFGAIGTLISFCIISLGAIHFFEKLGIGSLSIGDYLAIGAIFSATDS VCTLQVLNQDTTPLLYSLVFGEGVVNDATSVVLFKAIQNFDLSHIDLTTALQLIGKFSYLFIASTLLGILVGLLSAYIIK KLYFGKLIRHSTVREVALMILMAYLSYMLAELFSLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFIAEIFLF LYVGMDALDIEKWRIVSQSPRKSIGVSSLLLALILVGRAAFVFPLSFLSNLFTKSPSEKIEFKQQVTIWWAGLMRGAVSI ALSYNQFTKLDHTKLSEKAIMITSTITVVLFSTLVFGLMTKPLVRLLLPSSKYILIIQSPPPTPKSLTLPLLGNVHDSGD TENGTQPSNLHHYWRKFDDSVMRPVFGGRGFVPYVPGSPVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 7 | 520 | 514 | 2.6E-279 | ||
| PANTHER | 7 | 520 | 514 | 2.6E-279 | ||
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 20 | 42 | 23 | - | – | |
| Gene3D | 23 | 450 | 428 | 1.8E-9 | ||
| TIGRFAM | 24 | 447 | 424 | 3.6E-77 | ||
| Pfam | 28 | 445 | 418 | 4.3E-60 | ||
| Phobius | 43 | 53 | 11 | - | – | |
| TMHMM | 47 | 68 | 22 | - | – | |
| Phobius | 54 | 71 | 18 | - | – | |
| Phobius | 72 | 82 | 11 | - | – | |
| TMHMM | 83 | 100 | 18 | - | – | |
| Phobius | 83 | 100 | 18 | - | – | |
| PRINTS | 83 | 94 | 12 | 6.1E-12 | ||
| PRINTS | 97 | 111 | 15 | 6.1E-12 | ||
| Phobius | 101 | 111 | 11 | - | – | |
| Phobius | 112 | 135 | 24 | - | – | |
| PRINTS | 112 | 120 | 9 | 6.1E-12 | ||
| TMHMM | 112 | 134 | 23 | - | – | |
| Phobius | 136 | 146 | 11 | - | – | |
| Phobius | 147 | 167 | 21 | - | – | |
| PRINTS | 152 | 162 | 11 | 6.1E-12 | ||
| Phobius | 168 | 173 | 6 | - | – | |
| Phobius | 174 | 197 | 24 | - | – | |
| Phobius | 198 | 216 | 19 | - | – | |
| Phobius | 217 | 239 | 23 | - | – | |
| TMHMM | 217 | 239 | 23 | - | – | |
| Phobius | 240 | 259 | 20 | - | – | |
| TMHMM | 260 | 282 | 23 | - | – | |
| Phobius | 260 | 288 | 29 | - | – | |
| Phobius | 289 | 307 | 19 | - | – | |
| TMHMM | 302 | 324 | 23 | - | – | |
| Phobius | 308 | 328 | 21 | - | – | |
| Phobius | 329 | 348 | 20 | - | – | |
| TMHMM | 344 | 366 | 23 | - | – | |
| Phobius | 349 | 368 | 20 | - | – | |
| Phobius | 369 | 387 | 19 | - | – | |
| TMHMM | 386 | 405 | 20 | - | – | |
| Phobius | 388 | 407 | 20 | - | – | |
| Phobius | 408 | 418 | 11 | - | – | |
| TMHMM | 418 | 440 | 23 | - | – | |
| Phobius | 419 | 439 | 21 | - | – | |
| Phobius | 440 | 521 | 82 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Vacuolar membrane | The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell. | ||
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Sodium ion transport | The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Regulation of pH | Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell. | ||
| Biological process | Response to salt stress | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. | ||
| Molecular function | Solute:proton antiporter activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out). | ||
| Molecular function | Sodium:proton antiporter activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Potassium ion homeostasis | Any process involved in the maintenance of an internal steady state of potassium ions within an organism or cell. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0346500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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