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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0346900 |
| Transcript ID | LotjaGi4g1v0346900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G36980.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SJK9|PP189_ARATH Pentatricopeptide repeat-containing protein At2g36980, mitochondrial; TrEMBL-Plants: tr|I1KN39|I1KN39_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0346900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72620620..72622512) extracted from Lotus japonicus Gifu genome v1.2.
ATGCATAGCATGCGTTCTTATTTGTTCCAAACTACGTCTAAGATCGTTTCCCTAGCACGTTCAGGTAGAATTTGTCATGC TCGCAAACTGTTCGATGAAATGCCTGACAGAGACTCTGTTGCTTGGAATGCCATGATAACTGCCTATTCCCACCTAGGAC TTTACCAACAAAGTCTCAGTCTCTTTGGCAGCATGAGAATCTCCAATTCCAAGCCAGATAGCTTCTCCTACTCCGCAGCC TTAAGTGCTTGCGCAGGGGGATCCCACCATGGTTTTGGAAGTGTAATTCATGCTTTGGTTGTTGTTTCAGGGTACCGGTC ATCTCTTCCTGTCGCTAATTCGCTCATTGATATGTATGGCAAGTGTTTGAAGCCTCATGATGCGAGAAAAGTGTTTGATG AGATGGCTGATAGTAATGAAGTGACGTGGTGTTCACTTCTGTTTGCTTATGCTAACTCTTCTTTGTTTGGCATGGCTCTT GAAGTGTTTCGCAGCATGCCTGAAAGGGTTGAAATTGCTTGGAATACAATGATTGCGGGCCATGCTCGTCGTGGTGAAGT TGAAGCGTGCTTGGGTTTGTTCAAAGAGATGTGTGAGAGTCTGTATCAGCCAGACCAGTGGACTTTCAGTGCTCTCATGA ATGCTTGCACCGAGTCAAGGGATATGTTGTACGGATGCATGGTGCATGGTTTTGTGATTAAATCTGGTTGGAGCTCTGCT ATGGAGGTAAAGAACTCCATTTTAAGCTTCTATGCCAAATTAGAATGTCCTAGTGATGCAATGGAGATGTTTAACTCCTT TGGTGCTTTCAATCAAGTGTCTTGGAATGCCATCATTGATGCCCACATGAAATTGGGGGATACCCAGAAAGCCTTTCTTG CTTTCCAGCAAGCCCCTGACAAAAATATAGTTTCTTGGACTTCTATGATTGTAGGGTACACGAGAAACGGGAATGGAGAG CTAGCTCTAAGCATGTTTTTAGACATGACAAGAAATTCTATCCAACTTGATAATTTAGTAGCTGGAGCAGTCCTTCATGC TTGTGCTAGCTTAGCAATACTAGCTCATGGGAAAATGGTCCACAGTTGCATAATACGTCGCGGTTTAGACAAATACTTAT TTGTTGGCAATAGCTTGGTTAATATGTATGCTAAATGTGGAGATTTGGAAGGTTCAGCGCTTGCATTTTGCGGCATTCTT GAGAAGGACCTGGTTTCTTGGAATTCAATGTTGTTTGCATTTGGACTGCATGGGCGAGCCAATGAAGCTATGTGCCTGTT CAGAGAAATGGTTGCATCTGGTGTAAAACCTGATGAAGTTACCTTCACAGGGATGCTAATGACTTGCAGCCACTTGGGGC TTATAGATGAGGGCTTTGCATTCTTTCGATCAATGAGTTCAGAGTTTGGACTTTCCCATGGAATGGATCATGTGGCATGC ATGGTGGATATGCTTGGTCGAGGCGGGTATGTGGCAGAAGCACAAAGTTTAGCTAAGAAGTATTCTAAAACAAGTGGAGC TAGGACCAATTCATATGAGGTTCTGCTTGGAGCATGTCACGCACATGGAGATTTAGGAACTGGGAGCTCTGTGGGAGAAT ATCTGAAGACCTTAGAGCCTGAAAAAGAGGTTGGTTATGTAATGCTGTCAAATCTGTATTGTGCAAGTGGGCAGTGGAAG GAAGCAGAGATAGTTCGAAAGGAAATGCTGGATCAAGGGGTGAAGAAAGTGCCTGGTAGTAGTTGGATTGAGATAAGAAA TGTGGTCACTGCTTTTGTATCTGGAAATAATTCATCTCCCTACATGGCTGACATATCTAACATATTATACTTCCTTGAAA TAGAAATGAGACACACAGGGCCTATTAATTTTGATATTGATGGATCTTTATAA
CDS sequence (LotjaGi4g1v0346900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATAGCATGCGTTCTTATTTGTTCCAAACTACGTCTAAGATCGTTTCCCTAGCACGTTCAGGTAGAATTTGTCATGC TCGCAAACTGTTCGATGAAATGCCTGACAGAGACTCTGTTGCTTGGAATGCCATGATAACTGCCTATTCCCACCTAGGAC TTTACCAACAAAGTCTCAGTCTCTTTGGCAGCATGAGAATCTCCAATTCCAAGCCAGATAGCTTCTCCTACTCCGCAGCC TTAAGTGCTTGCGCAGGGGGATCCCACCATGGTTTTGGAAGTGTAATTCATGCTTTGGTTGTTGTTTCAGGGTACCGGTC ATCTCTTCCTGTCGCTAATTCGCTCATTGATATGTATGGCAAGTGTTTGAAGCCTCATGATGCGAGAAAAGTGTTTGATG AGATGGCTGATAGTAATGAAGTGACGTGGTGTTCACTTCTGTTTGCTTATGCTAACTCTTCTTTGTTTGGCATGGCTCTT GAAGTGTTTCGCAGCATGCCTGAAAGGGTTGAAATTGCTTGGAATACAATGATTGCGGGCCATGCTCGTCGTGGTGAAGT TGAAGCGTGCTTGGGTTTGTTCAAAGAGATGTGTGAGAGTCTGTATCAGCCAGACCAGTGGACTTTCAGTGCTCTCATGA ATGCTTGCACCGAGTCAAGGGATATGTTGTACGGATGCATGGTGCATGGTTTTGTGATTAAATCTGGTTGGAGCTCTGCT ATGGAGGTAAAGAACTCCATTTTAAGCTTCTATGCCAAATTAGAATGTCCTAGTGATGCAATGGAGATGTTTAACTCCTT TGGTGCTTTCAATCAAGTGTCTTGGAATGCCATCATTGATGCCCACATGAAATTGGGGGATACCCAGAAAGCCTTTCTTG CTTTCCAGCAAGCCCCTGACAAAAATATAGTTTCTTGGACTTCTATGATTGTAGGGTACACGAGAAACGGGAATGGAGAG CTAGCTCTAAGCATGTTTTTAGACATGACAAGAAATTCTATCCAACTTGATAATTTAGTAGCTGGAGCAGTCCTTCATGC TTGTGCTAGCTTAGCAATACTAGCTCATGGGAAAATGGTCCACAGTTGCATAATACGTCGCGGTTTAGACAAATACTTAT TTGTTGGCAATAGCTTGGTTAATATGTATGCTAAATGTGGAGATTTGGAAGGTTCAGCGCTTGCATTTTGCGGCATTCTT GAGAAGGACCTGGTTTCTTGGAATTCAATGTTGTTTGCATTTGGACTGCATGGGCGAGCCAATGAAGCTATGTGCCTGTT CAGAGAAATGGTTGCATCTGGTGTAAAACCTGATGAAGTTACCTTCACAGGGATGCTAATGACTTGCAGCCACTTGGGGC TTATAGATGAGGGCTTTGCATTCTTTCGATCAATGAGTTCAGAGTTTGGACTTTCCCATGGAATGGATCATGTGGCATGC ATGGTGGATATGCTTGGTCGAGGCGGGTATGTGGCAGAAGCACAAAGTTTAGCTAAGAAGTATTCTAAAACAAGTGGAGC TAGGACCAATTCATATGAGGTTCTGCTTGGAGCATGTCACGCACATGGAGATTTAGGAACTGGGAGCTCTGTGGGAGAAT ATCTGAAGACCTTAGAGCCTGAAAAAGAGGTTGGTTATGTAATGCTGTCAAATCTGTATTGTGCAAGTGGGCAGTGGAAG GAAGCAGAGATAGTTCGAAAGGAAATGCTGGATCAAGGGGTGAAGAAAGTGCCTGGTAGTAGTTGGATTGAGATAAGAAA TGTGGTCACTGCTTTTGTATCTGGAAATAATTCATCTCCCTACATGGCTGACATATCTAACATATTATACTTCCTTGAAA TAGAAATGAGACACACAGGGCCTATTAATTTTGATATTGATGGATCTTTATAA
Protein sequence (LotjaGi4g1v0346900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHSMRSYLFQTTSKIVSLARSGRICHARKLFDEMPDRDSVAWNAMITAYSHLGLYQQSLSLFGSMRISNSKPDSFSYSAA LSACAGGSHHGFGSVIHALVVVSGYRSSLPVANSLIDMYGKCLKPHDARKVFDEMADSNEVTWCSLLFAYANSSLFGMAL EVFRSMPERVEIAWNTMIAGHARRGEVEACLGLFKEMCESLYQPDQWTFSALMNACTESRDMLYGCMVHGFVIKSGWSSA MEVKNSILSFYAKLECPSDAMEMFNSFGAFNQVSWNAIIDAHMKLGDTQKAFLAFQQAPDKNIVSWTSMIVGYTRNGNGE LALSMFLDMTRNSIQLDNLVAGAVLHACASLAILAHGKMVHSCIIRRGLDKYLFVGNSLVNMYAKCGDLEGSALAFCGIL EKDLVSWNSMLFAFGLHGRANEAMCLFREMVASGVKPDEVTFTGMLMTCSHLGLIDEGFAFFRSMSSEFGLSHGMDHVAC MVDMLGRGGYVAEAQSLAKKYSKTSGARTNSYEVLLGACHAHGDLGTGSSVGEYLKTLEPEKEVGYVMLSNLYCASGQWK EAEIVRKEMLDQGVKKVPGSSWIEIRNVVTAFVSGNNSSPYMADISNILYFLEIEMRHTGPINFDIDGSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 90 | 86 | 4.0E-16 | ||
| ProSiteProfiles | 7 | 37 | 31 | 5.689 | ||
| PANTHER | 13 | 85 | 73 | 4.9E-100 | – | |
| Pfam | 38 | 85 | 48 | 4.7E-9 | ||
| ProSiteProfiles | 38 | 72 | 35 | 10.676 | ||
| TIGRFAM | 40 | 73 | 34 | 1.2E-4 | ||
| ProSiteProfiles | 73 | 107 | 35 | 5.053 | ||
| PANTHER | 93 | 220 | 128 | 4.9E-100 | – | |
| Gene3D | 94 | 225 | 132 | 3.7E-26 | ||
| ProSiteProfiles | 108 | 138 | 31 | 7.815 | ||
| Pfam | 113 | 137 | 25 | 3.6E-4 | ||
| ProSiteProfiles | 139 | 169 | 31 | 8.616 | ||
| Pfam | 141 | 169 | 29 | 0.0033 | ||
| ProSiteProfiles | 170 | 204 | 35 | 9.756 | ||
| Pfam | 172 | 216 | 45 | 5.5E-11 | ||
| TIGRFAM | 173 | 200 | 28 | 1.0E-6 | ||
| ProSiteProfiles | 205 | 239 | 35 | 6.511 | ||
| Gene3D | 227 | 358 | 132 | 2.5E-19 | ||
| ProSiteProfiles | 271 | 301 | 31 | 7.684 | ||
| Pfam | 273 | 299 | 27 | 0.0089 | ||
| TIGRFAM | 273 | 303 | 31 | 0.0016 | ||
| PANTHER | 279 | 358 | 80 | 4.9E-100 | – | |
| ProSiteProfiles | 302 | 336 | 35 | 10.15 | ||
| TIGRFAM | 304 | 337 | 34 | 6.9E-6 | ||
| Pfam | 304 | 333 | 30 | 1.2E-6 | ||
| PANTHER | 343 | 569 | 227 | 4.9E-100 | – | |
| Gene3D | 359 | 455 | 97 | 2.7E-17 | ||
| ProSiteProfiles | 372 | 402 | 31 | 5.009 | ||
| Pfam | 402 | 449 | 48 | 9.0E-11 | ||
| ProSiteProfiles | 403 | 437 | 35 | 12.43 | ||
| TIGRFAM | 405 | 439 | 35 | 1.1E-7 | ||
| ProSiteProfiles | 438 | 468 | 31 | 7.947 | ||
| Gene3D | 468 | 599 | 132 | 3.9E-6 | ||
| ProSiteProfiles | 542 | 576 | 35 | 9.032 | ||
| Pfam | 546 | 574 | 29 | 0.025 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0346900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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