Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0348900 |
| Transcript ID | LotjaGi4g1v0348900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ap-5 complex subunit mu; TAIR: AT2G20790.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q8W0Z6|AP5M_ARATH AP-5 complex subunit mu; TrEMBL-Plants: tr|A0A151STS3|A0A151STS3_CAJCA MHD domain-containing death-inducing protein; Found in the gene: LotjaGi4g1v0348900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72769040..72774860) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATTCGACCTTAGGTAGGTGATCTCCTCACCCTTCTTCTCCTTCACTTAATAAAGGAAGACAAACTACAAAAACTAA TTTCTCATATTTCGAGACTAAAATCAATAAAAATAACTAAAGGATCAATTTCAATTCACCCATTAAAAAAATACTATCCA ATTGTAATTTGTTTTTTCGAGGGTCCAATTGTAATTTCATTTTAACCGAAAACTTGCACACTGCGAGTTCATCATGGACA CCGTACGCTAGTTCCTTCTCCGTCCCAGTCCGCTCGGAGAAACTACCATGCCCAGCGGTTGCTGCATCAGAGCAATCTGG ATTCTCAACAACCTCGACGCCGTCGCTTTCTCCAGGAAGTTTCCGGTGGTAGAGAAGCGGTGGCGAGCTGCTTGCACCAC CGCCGATCATGTCTTCTCTTCCTTACCCCCTGACTCTGACCTAGCCGATGCTTTTCTCCAAAGAAGACACAGGTTCCATT CATTTCACGCTCTAATTGCTTCTACTCTGAACGAATCTCATTATTCGAATGCGAAAATGGTAACTAAATTCCTTGCAGGG AAGGATCTGCGCGAGGATTTGGCATCCGCAAGAGCAATTCATCTGTGGGGTCAGATTCGTGGGTGGATGATCCTATTACT CGTCATGTAATTGGTCTTTACATTAACAAGGAAGAGGAGGACGATGATAATCTTCTGTGGCCTCTAATCTTGCACATTAG GGGCCATTACAGTATACTTGTTCTGCCATTGGTTGAGCCTAGGCATTTGAAGGCTTATGCCAAGTTATGTAAAAGAGCTG ATTGTGGAAGTGCTCTTGGGCTTGATGGTAGTTTGTCTTCTCTCTTGCTGGATCTTCCTTCAATAACAGGGTATTATATT TATGCTAAGTTACTTTACTTGTAAATGGCTTCAGCATTCAGGAATTAGTATACCATATAGTTTAGATTGTGTAGTTGTAG TGTAATTAGTATTATAATTTTTTATTGGATCAATGGATGATTTATTGGGTTACTACCCATGTCAGAAGTTTTGATAAATT GTGTGAGAAATTTACCTAATTTTGCTGAGAATGCTACTGAATGAGGTTTTTGTTCAGCTTGTACTGGCAGATGCCAAGGC AATTGCCCATTGGAGCCCCAACTTAGATTACAACTAATAAGCCATTATGTGGGTTAAGAAAATAACACTGGCATGCTTAA ACATTAGTGTCTTATTGGAGAAGTGGTTGATGCAAAAGGAATGGTGGGTTTAGTTTTCTTTTGGGAACTAGATTCCCCAA GGTATTCTAACTAAGAGATATAGTCTCATTGATGAGTCTCCACCTAACAGTTTAAACTTTGTAGGATACTGATCCTTTAC ATAGTAAGAGACCTTTATGATCAGATGGTTAGGAATATGATCATTACCACCCCTTTCTTCATAAATAAACAGAATTTTGG TACTAGACAAAGTTGGCATGGGGCAATTGCATGAGGAAGCATATTAAAGATAATATTAGACCACTCATGGGTGTCTCTAC CTAACAGCTTAAGCTTTTAAGATGGTTAGTTCTTGATAGATCAACTACTTTTAAAATGGAGAGCTCTTGGGCTTGTTGGG TCTTCCCATCATGTTAGGATGTAAGCTTATTTGCTTGTAACAACTTCCAAGTATCAGTGTGTTTTTTAGTGCTGACTCCT CTCCCTTTAAGTTGAGGGTGGGAGGTGAGATTTTAACATCGATTTTCATTCATTTCGTGTATGTGCTCATTGTATTGTGT GGGAAAATAGAAGCCACATATCCCAATGCCCTTCTTACAATGTGCTTGAAGTGCACTTTCAGTGGACTTTTAGAGAAATT TTTTAGTAGCCCATACTTAAGAAAATATGATAGTCTCACCTTAGGTTGTCTAGACCTGTAATGGGAGGACCTATAGATGC ACTGGTTAGGAGGGTTCACCAAATGGAGGATAGTCCTATATGTAGACTCGTAGAGGCAGAGGGAGACTAAGAAAAGGTAT AAGCCAAATCATTAAGAGAGATTTACAGGTAAGCGGTCTATTTTAAAATTTAATACATTAAACATGATAGAGATATATGG GGTGGTGTGCATGTAGCCGACTGCACCTAGTGGCAAAAGGCAGAGTTGTTTATATATTTATGACACACACAGTCATGCAC ACACACACCCACATTAACATGGGTCCGACTATAGTTTGTTTGCAGTATTGATGGTCATGGAGTGTTACTTAATCGCATGT ACTTTTAATGAGAGATATCAGGCTACTTTTTCCTTTAATTTCACAGGGCATTTATGATAGCTCATGCCATTGGTGACATA ATTACTGGCGACACCGCAGAACCTGAAGTAATCGTGAGTGCAGCTCCCTCTGTTGGAGGGCTGTTTGATTCATTGACCGG CAGTATAGGCATCTCCTCCAGGGCAAAACCCGTGGCTCCACCAGTTGCCTCCTCTCCTTTGAGTGCAGCTGCACCAGGAT CTGTTTCAGCTGATACTCCGAAAATTGGGTCTAAGCCTTTGGATAAAGATGCACTCAGGACATTTATAAGTAGTTCAATG CCCTTTGGTTGGTACCTTTTATTCTGGTATTTCTCATCTCGTAATTTTGTTGTAACGTTTAAAGATAACCTGACAGTTAT CTATTGCTTGTAACTTTATTTTATCAATGTATATTTTTTATACAGGTACACCCTTGGACCTTAATTATTCCAATATTTTC ACCATCAAGGTCAATGGCTTTTCTGCATCAGATTTGCCTCCTGCAGACCAGAAGCAACCAGCTTGGAAGCCATATCTATA CAAAGGAAAGCAGAAAATGCTGTTCACGATTCATGAGATTGTTCATGCAGCTCTGTATGATAGAGATGAAATTCCAGATA TTATATCAGTTTCTGGTCAAATAAATTGTAGAGCTGAACTGGAAGGGTTGCCAGACGTGTCATTTCCCTTAACAGGATTG AACACAGCAAACCTTGAGGTTTCATCATATCATCCTTGTGCTCAAGTTTCAGATCAGGGTTTGGATAAGCAGGGTCTGGT GTTTTCTCCTCCATTAGGTAATTTTGTGTTGATGCGCTATCAGGCAACTTGTACCCTTGGACCCCCTATTAAGGGATTCT ATCAATTATCAATGGTTTCTGAGGATGAAGGTGCATTTCTATTCAAGTTACGTCTAATGGGAGGTTATAAGGCTCCTTTA ACAATGGAGTTCTGTACTGTGACTATGCCCTTTCCTAGGAGGAGGATTGTATCTTTGGATGGGACTCCTTCTGTTGGATC AGTTTCAACTTCAGAGCACTCTGTTGAATGGAAAATTGTGCCAAGTGGACGGGGACTGTCTGGGAAAAGTATTGAAGTGA CTTTCCCTGGAACAGTCAAGTTTGCGCCATGGAAAATCCAAAGGGTGTCTTCCTCTAAGTCATCATTTGGAACCATTGCT GATGAGGATAGTGATAATGAGGCAGAAAATGCTAGCAACATGGTTAATGAAGAACATTTGATGGAGAAAATGAACAAGGA TCTTCCTCCAGTTGATCTAGAGGAACCATTTTGCTGGCAAGCATACAATTATGCTAAAGTACGTGCCTCCCCATTTTTAT ATTATCTTTTAGCACAGGATCTTCTTTATCTTTTAACATTTAATGAAGTTTGCATTTCTCTGTCAATTGATATTTGTTTC ATTATTTTGTTTTCATTCTTGATTAGTTTATGCTGTTGGTAATTTTATCATGTAATCATATTGTCGTCTCCTTAGTGCTG AAATTAAGGGATGGGAAGAAGAAGAGATAACAGAGAATATATTTCAATAATGTGACACTGAAGCAGAATAACCGTATTGC TGTGAAAATGCTCAAAGCAATAATTTAATACCCCTATTTCTGTAATGATAGGTGCCAAGGGAAATATTGGTTTCTAGTTA TGAGTAGTATCATCATCAATAAGCAGGGGCGGTCATATTTCATTGGATTTAAACATTTGTGTTTTAAGGGTCTTAGTACC CTTGTAACTCACCATTCAATAAATTTATTTTACTTATAAAAAGATAAGCGAAGTCCTACTAATATTCTAGGCGAGATGCA AATATAGTACACATTGTACAATACAAACCAATTGGACATGTTACGTACTAGACTCCTGACAAATTAATAATCTCAACATT CTGACTTTAACTCCTTTTGGAACAAATTTGTACTAAATATTCTATCTGTTTAATTTGTTACCCGATTTGTCCAATCTTCA TTCTTCTAATTTTAGTTTCTCCTATGTTATCCAATCATCATAAGAATTTCAGGCATTAAGACTTAAGTTTCATATCTTAT ACCCCGAAGCAGATAAGGGTTGGCATACAGTATAATAAAGTAATATCTTTTTGTGATCATTTATTCATTTTCTTTTATTG TTTTTTGTTTATGCCAGTCTCTTTGATGGTTAGAGTAATAAATAATGATAATCTTTCCATGTTTACTCATTATGAGTTAG TTCATGGCCCTCAGGTATGTGTGTTATTGGCTTCTTTTTAGCATGTTATATGCTTTTCTGTACTTCTAAATTGGAGTATA TTTATCCTAGCTAACTTCTTGATACGACTAGTCAGTCAAGCTTTCAATAGTTGTGCACTTGGACACTGTTCTATCGAGCT TTTGGGAAAAATTTCCTTGTTTATGCTACTTAACTGTCTACGAATAGATTGATTATATATTCCATGTATAAAAAAGTAAT TATTGTAAAATTTAAGAGCATGCGTTTGGTTAGACTACATATCTTGAAATTACGTTGAAGCATCTAACTCCATGAGGATT ATATTTTATAGTTGTTTTGTTATTAATCACAGGTATCATTCAAGATCATTGGGGCATCTGTATCTGGAATTGCGGTTGAT CCTAAATCTGTGAGTCTAGGAGTCCATCTTTGTTGACATTCATATTTTAGATAAAGAATTAAGATCCATCTAATTTTGTT TTAGTATCACAAATATATGTTCACGGTAATTGATAATAACCTTATGTTTCTGTGTTTTGTTCCGATGCCACTCCCTGTAG TGTATTTATCGTACAACTTGCCCTTTCTATTCTTTGATTTTAACATCAAAGGGTAAAGAGGAGTCATCAGCCATAGTGAA AGTTCTATCTTTTGTTGTCCATCTGATAGTTTGTGCATTTTGTAGGTGAGCATCTACCCAGCTGTAAAAGCACCCATGGA GTTTTCAACTCAGGTATGTTTACAATTTTTGTTCGTTTTAGATCAGTGGTTCATATTTCAAGCAAGCCCCACATCTATGA TAAATCTCCCAAAATTTTGGGCTCCTTCCAGTGTCGATGATATTTGTTCGGATTTTCACAATTTCTTGGTTTGTAAACAG GTTACTTCTGGAGACTATATTTTGTGGAATACTCTTGGTAAGTGCCCACATGTTGCCACAATGAAGGTGTAAAATATGAA TGGCCACTGAGGATTGTCTGAAATGGCAGAGGCACCATCAGATATCTGATGGAAACTCTTAACTGATGTTCTTTATTCTC TGCCAAGTTATGTGGAGACAGGCAATTAAGAAAGAAAGAAAGAAATGTTGTGTTAGCTGTTAATTTTTTTTTTGGTATGT TTTGTAAGTGCTCGTTAACAAATTCATTGTTATTTTACCCAACAATAATAGTTTCTTTTTGTTTTTGAAACAAACAATAA TAGTTGGTTGCAGTAAAAGTAAAGTATAAAGCAATGTCAATATGGGAAGGATTTTACTAATCTTCTTCTTCAACCCTCAC GTCTCACTCTCTAAACTCTAAAATTAAAAATGGAGGTCCTCTTCCTTTATCCTTTTCATGA
CDS sequence (LotjaGi4g1v0348900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCAGCGGTTGCTGCATCAGAGCAATCTGGATTCTCAACAACCTCGACGCCGTCGCTTTCTCCAGGAAGTTTCCGGT GGTAGAGAAGCGGTGGCGAGCTGCTTGCACCACCGCCGATCATGTCTTCTCTTCCTTACCCCCTGACTCTGACCTAGCCG ATGCTTTTCTCCAAAGAAGACACAGGGAAGGATCTGCGCGAGGATTTGGCATCCGCAAGAGCAATTCATCTGTGGGGTCA GATTCGTGGGTGGATGATCCTATTACTCGTCATGTAATTGGTCTTTACATTAACAAGGAAGAGGAGGACGATGATAATCT TCTGTGGCCTCTAATCTTGCACATTAGGGGCCATTACAGTATACTTGTTCTGCCATTGGTTGAGCCTAGGCATTTGAAGG CTTATGCCAAGTTATGTAAAAGAGCTGATTGTGGAAGTGCTCTTGGGCTTGATGGTAGTTTGTCTTCTCTCTTGCTGGAT CTTCCTTCAATAACAGGGGCATTTATGATAGCTCATGCCATTGGTGACATAATTACTGGCGACACCGCAGAACCTGAAGT AATCGTGAGTGCAGCTCCCTCTGTTGGAGGGCTGTTTGATTCATTGACCGGCAGTATAGGCATCTCCTCCAGGGCAAAAC CCGTGGCTCCACCAGTTGCCTCCTCTCCTTTGAGTGCAGCTGCACCAGGATCTGTTTCAGCTGATACTCCGAAAATTGGG TCTAAGCCTTTGGATAAAGATGCACTCAGGACATTTATAAGTAGTTCAATGCCCTTTGGTACACCCTTGGACCTTAATTA TTCCAATATTTTCACCATCAAGGTCAATGGCTTTTCTGCATCAGATTTGCCTCCTGCAGACCAGAAGCAACCAGCTTGGA AGCCATATCTATACAAAGGAAAGCAGAAAATGCTGTTCACGATTCATGAGATTGTTCATGCAGCTCTGTATGATAGAGAT GAAATTCCAGATATTATATCAGTTTCTGGTCAAATAAATTGTAGAGCTGAACTGGAAGGGTTGCCAGACGTGTCATTTCC CTTAACAGGATTGAACACAGCAAACCTTGAGGTTTCATCATATCATCCTTGTGCTCAAGTTTCAGATCAGGGTTTGGATA AGCAGGGTCTGGTGTTTTCTCCTCCATTAGGTAATTTTGTGTTGATGCGCTATCAGGCAACTTGTACCCTTGGACCCCCT ATTAAGGGATTCTATCAATTATCAATGGTTTCTGAGGATGAAGGTGCATTTCTATTCAAGTTACGTCTAATGGGAGGTTA TAAGGCTCCTTTAACAATGGAGTTCTGTACTGTGACTATGCCCTTTCCTAGGAGGAGGATTGTATCTTTGGATGGGACTC CTTCTGTTGGATCAGTTTCAACTTCAGAGCACTCTGTTGAATGGAAAATTGTGCCAAGTGGACGGGGACTGTCTGGGAAA AGTATTGAAGTGACTTTCCCTGGAACAGTCAAGTTTGCGCCATGGAAAATCCAAAGGGTGTCTTCCTCTAAGTCATCATT TGGAACCATTGCTGATGAGGATAGTGATAATGAGGCAGAAAATGCTAGCAACATGGTTAATGAAGAACATTTGATGGAGA AAATGAACAAGGATCTTCCTCCAGTTGATCTAGAGGAACCATTTTGCTGGCAAGCATACAATTATGCTAAAGTATCATTC AAGATCATTGGGGCATCTGTATCTGGAATTGCGGTTGATCCTAAATCTGTGAGCATCTACCCAGCTGTAAAAGCACCCAT GGAGTTTTCAACTCAGGTTACTTCTGGAGACTATATTTTGTGGAATACTCTTGGTAAGTGCCCACATGTTGCCACAATGA AGGTGTAA
Protein sequence (LotjaGi4g1v0348900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSGCCIRAIWILNNLDAVAFSRKFPVVEKRWRAACTTADHVFSSLPPDSDLADAFLQRRHREGSARGFGIRKSNSSVGS DSWVDDPITRHVIGLYINKEEEDDDNLLWPLILHIRGHYSILVLPLVEPRHLKAYAKLCKRADCGSALGLDGSLSSLLLD LPSITGAFMIAHAIGDIITGDTAEPEVIVSAAPSVGGLFDSLTGSIGISSRAKPVAPPVASSPLSAAAPGSVSADTPKIG SKPLDKDALRTFISSSMPFGTPLDLNYSNIFTIKVNGFSASDLPPADQKQPAWKPYLYKGKQKMLFTIHEIVHAALYDRD EIPDIISVSGQINCRAELEGLPDVSFPLTGLNTANLEVSSYHPCAQVSDQGLDKQGLVFSPPLGNFVLMRYQATCTLGPP IKGFYQLSMVSEDEGAFLFKLRLMGGYKAPLTMEFCTVTMPFPRRRIVSLDGTPSVGSVSTSEHSVEWKIVPSGRGLSGK SIEVTFPGTVKFAPWKIQRVSSSKSSFGTIADEDSDNEAENASNMVNEEHLMEKMNKDLPPVDLEEPFCWQAYNYAKVSF KIIGASVSGIAVDPKSVSIYPAVKAPMEFSTQVTSGDYILWNTLGKCPHVATMKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 614 | 614 | 6.6E-215 | ||
| Gene3D | 290 | 413 | 124 | 1.3E-10 | – | |
| CDD | 291 | 608 | 318 | 6.69268E-117 | – | |
| SUPERFAMILY | 291 | 601 | 311 | 2.09E-35 | ||
| Pfam | 292 | 584 | 293 | 1.7E-32 | ||
| ProSiteProfiles | 301 | 563 | 263 | 14.587 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0348900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…