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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036168
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We have found 16 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.604s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0137900.1
n.a. AP-4 complex subunit mu; TAIR: AT4G24550.2 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q9SB50|AP4M_ARATH AP-4 complex subunit mu; TrEMBL-Plants: tr|V7B6Q9|V7B6Q9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0137900 LjG1.1_chr1 22509403 22517521 +
2 domain predictions
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LotjaGi1g1v0422200.1
n.a. AP-4 complex subunit mu; TAIR: AT4G24550.2 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q9SB50|AP4M_ARATH AP-4 complex subunit mu; TrEMBL-Plants: tr|I1JT85|I1JT85_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0422200 LjG1.1_chr1 91633578 91638641 -
2 domain predictions
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LotjaGi1g1v0748800.1
n.a. AP-3 complex subunit mu; TAIR: AT1G56590.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|F4I562|AP3M_ARATH AP-3 complex subunit mu; TrEMBL-Plants: tr|A0A0B2P3M3|A0A0B2P3M3_GLYSO AP-3 complex subunit mu-1; Found in the gene: LotjaGi1g1v0748800 LjG1.1_chr1 132127509 132132140 -
2 domain predictions
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LotjaGi1g1v0748800.2
n.a. AP-3 complex subunit mu; TAIR: AT1G56590.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|F4I562|AP3M_ARATH AP-3 complex subunit mu; TrEMBL-Plants: tr|A0A151TW96|A0A151TW96_CAJCA AP-3 complex subunit mu-1; Found in the gene: LotjaGi1g1v0748800 LjG1.1_chr1 132129817 132131954 -
2 domain predictions
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LotjaGi2g1v0323900.1
n.a. AP-1 complex subunit mu-1; TAIR: AT1G60780.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|O22715|AP1M2_ARATH AP-1 complex subunit mu-2; TrEMBL-Plants: tr|I1J553|I1J553_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0323900 LjG1.1_chr2 79899541 79906354 -
2 domain predictions
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LotjaGi2g1v0415100.1
n.a. AP-2 complex subunit mu; TAIR: AT5G46630.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|O23140|AP2M_ARATH AP-2 complex subunit mu; TrEMBL-Plants: tr|I3SG06|I3SG06_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0415100 LjG1.1_chr2 91297033 91303278 +
2 domain predictions
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LotjaGi2g1v0415100.2
n.a. AP-2 complex subunit mu; TAIR: AT5G46630.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|O23140|AP2M_ARATH AP-2 complex subunit mu; TrEMBL-Plants: tr|A0A0R0JTT3|A0A0R0JTT3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0415100 LjG1.1_chr2 91297334 91302453 +
2 domain predictions
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LotjaGi2g1v0415100.3
n.a. AP-2 complex subunit mu; TAIR: AT5G46630.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|O23140|AP2M_ARATH AP-2 complex subunit mu; TrEMBL-Plants: tr|I3SG06|I3SG06_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0415100 LjG1.1_chr2 91297334 91302453 +
2 domain predictions
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LotjaGi2g1v0415100.4
n.a. AP-2 complex subunit mu; TAIR: AT5G46630.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|O23140|AP2M_ARATH AP-2 complex subunit mu; TrEMBL-Plants: tr|I3SG06|I3SG06_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0415100 LjG1.1_chr2 91297334 91302453 +
2 domain predictions
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LotjaGi4g1v0156900.1
n.a. AP-1 complex subunit mu-1; TAIR: AT1G60780.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|O22715|AP1M2_ARATH AP-1 complex subunit mu-2; TrEMBL-Plants: tr|I1N1K1|I1N1K1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0156900 LjG1.1_chr4 27295873 27304320 -
2 domain predictions
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LotjaGi4g1v0348900.1
n.a. Ap-5 complex subunit mu; TAIR: AT2G20790.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q8W0Z6|AP5M_ARATH AP-5 complex subunit mu; TrEMBL-Plants: tr|A0A151STS3|A0A151STS3_CAJCA MHD domain-containing death-inducing protein; Found in the gene: LotjaGi4g1v0348900 LjG1.1_chr4 72769040 72774860 -
2 domain predictions
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LotjaGi5g1v0343900.1
n.a. Coatomer subunit delta-like protein; TAIR: AT5G05010.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q93Y22|COPD_ARATH Coatomer subunit delta; TrEMBL-Plants: tr|G7II11|G7II11_MEDTR Coatomer subunit delta-like protein; Found in the gene: LotjaGi5g1v0343900 LjG1.1_chr5 66092734 66098168 -
2 domain predictions
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LotjaGi5g1v0343900.2
n.a. Coatomer subunit delta-like protein; TAIR: AT5G05010.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q93Y22|COPD_ARATH Coatomer subunit delta; TrEMBL-Plants: tr|G7II11|G7II11_MEDTR Coatomer subunit delta-like protein; Found in the gene: LotjaGi5g1v0343900 LjG1.1_chr5 66093233 66096871 -
2 domain predictions
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LotjaGi5g1v0350800.1
n.a. Coatomer subunit delta-like protein; TAIR: AT5G05010.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q93Y22|COPD_ARATH Coatomer subunit delta; TrEMBL-Plants: tr|A0A1J7FSC8|A0A1J7FSC8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0350800 LjG1.1_chr5 66661466 66666939 +
2 domain predictions
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LotjaGi5g1v0350800.2
n.a. Coatomer subunit delta-like protein; TAIR: AT5G05010.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q93Y22|COPD_ARATH Coatomer subunit delta; TrEMBL-Plants: tr|A0A1J7FSC8|A0A1J7FSC8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0350800 LjG1.1_chr5 66662676 66666668 +
2 domain predictions
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LotjaGi5g1v0350800.3
n.a. Coatomer subunit delta-like protein; TAIR: AT5G05010.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q93Y22|COPD_ARATH Coatomer subunit delta; TrEMBL-Plants: tr|A0A1J7FSC8|A0A1J7FSC8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0350800 LjG1.1_chr5 66662936 66666668 +
2 domain predictions
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