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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0353200 |
Transcript ID | LotjaGi4g1v0353200.5 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ATP-dependent RNA helicase; TAIR: AT5G19210.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q3E9C3|RH58_ARATH DEAD-box ATP-dependent RNA helicase 58, chloroplastic; TrEMBL-Plants: tr|A0A0R0JE29|A0A0R0JE29_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0353200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73180995..73183992) extracted from Lotus japonicus Gifu genome v1.2.
GACAAGGTCACTAAGGTTGCTAGGATGTTGGCAGCAAAGCCAACTGGAGTTGAGGGGGAGCAGAAGTCATGTACCGTCAT GGCTCTGTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGTTAAAGGTAGAAATGTTTTGTCGTCTTATTTTGCTTC TTCAATAAGTTTATTGTATTGTAATTTTAACCAAAGACGGACTAGCAAATGGTTGCTGGAACAATTTTGAATTCTACGGA AGACAACAATGTATTCTCTTCTAAAATCTTTTTGGAGATTAATTGAAAGATAATGGACTCTTTTTGGTGCTTATTTCTCA TGTTCTTCGGGTCAGTGTGATAACATTTTATTGACTCTTCTTAGATCATTTAAAATATAAAATATCTTATAAGTATAAAT TTTCAAAACATATGATAGCCCTGATTGAAGGCCACTTCCATTTACATTGATTTTTATCTTCTCTTTAACTGCTCACTGGC TGCATTAAGTCTTGTAGAGAAGACCCTTTTCCTACTTATTCAAGCTTGTTTAACTTTCTCAAATTTTAGGCAGAGCCTCC AGCAGTAATAGTCGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACACTTGTTTTCACTCGAAACTGTGAGGGTGC TGGTTGTTGATGAGGTAAAAGTTTTTGTCTTTGCAAATTAAATCAGCTGTTCCTTGCGCATTTTTCAGAAATCATGTTTG TACTGTTTAATGTAAGAAAGCAGATTTCCAGGTTTGTCTTGTTTTCAGAGTCCATGTTTTAAAACATATGGCCTCACCAC CCCCGGCTATAATTACTTATGTAAAAGATACGTAGTTAGTCATCTGATCATCTCTTTCATCCCTAGTGCAATCTAATGCG GTTAAAGAAATGAAAAGAGGCAAATACAGTTAATTAGTGGTGGATGAAAAGTGTTTGTTTATCATGTCAAGTTTCGTTAT TTCCACATATTCATGAGTGGGATGGGGTTTCCAACATGCCAGCTCCTTTTTTCCCTGCACCTTGATCTGTGATTTTAACC TTTTCTGCTTAGGTTGACTTTATTTTCAATTCTGCCAAGCAAGTGAGTTCTCTTCGGAAGATTTTGAATTCATCTTGCAA TAACCGCCAGACGGTTTTTGCGAGTGCATCTATACCACAACACAATCGATTTCTTCATGACTGTGTTCAGCAGAAATGGA CTAAGGTATAATGATTTGGTAATTTTTTTTTTTGGTCTTAAGGTATCTTAAATTTCACTACTTTTTATTTGTTTTCCAGA GTGATGTCATCCATATTCATGTCAGTCCAGTGGAGCCCATGCCATCTCGCCTATGTCATAGATATATAGTAAGAGATCTT AAGTATTTAACTACATAGATCTATAGTTTTCTATCATATAAAAAAGGGTTATAAAAAATTTATCTATTCCTTTTTTCTAT CCATTGATATCCTGTCAACCTGCCTCCTTTATCCTTTGAAAGATAGTATATAGAATTTGCTAAACTTCAATCTCATATTT TTTATTAGGTCATATTTATTAAGACCTATTTTAGGTATCGTATCAGTTAGTTTCTAATGCTACTTTAAATGTGCAATCAC CAGATATGCGATACAAAAAGAAAGCTACAAACCCTGTTATCCTTGATACAGTCTGACACACCTGAGTCTGGCATTATATT TGTTGGTGAGCAGGTATGCAGATAATATCTTTCTTATCATCACCTCCTCCTCCTTCAATTGGATTATGCAGTATTGATTC CACATCAATTGGATTATGCAATCAGTAGGTTGTGCCCTAGTAGTGAAATGAAATTTACTTTAAGGCTGTCTTTGGTTGCT TGCGTTAATTATGACTTGACAGTTGACACACTTCATATGAATGGTCCATATGTCTGATTTTGTGTTAAGTTATCATTGAT CTAATATTACATATTTTATTATGCAGTCTGAGAAGTCGAAAAAGGCTGGAAATGCTCCATCCACATCCCTTCTCATTGAC GTCCTAAAATCATCATATCAAGGTTCTTTAGATATCCTCCTTCTCGAAGATGAAATGAATTTCAACTCACGAGCATCTTC TCTGTTGGTAAGTGTCATTCAATGAATTGATGTTGGTAGGACTTAGGAGGTTTATTTGGCGACCCCCCCCCCCCCCCTGA CGTGTTGATTTTCCAAAATCTTTGCATTGCTGACTAATGTATTTAGCATCCAAATTCATTTTAACAGCCGTCTATCAATC ATACTGTGGCCTTGTAGCTGAGTTTTAAACAAGTTTTAATGAACAAGTCATATCCTGTTCTGACTTCTGATAACCAAATT ATACTGGGTGGTTCTACCAATTAACTAGGAAGCAGCAAGTATAGTGGTATTAGATAACACAGATTTAGCTGAGTTTTGAA CCATATTTTAAGGGAACTCAATAGTGTGGACTAGCTGAGGATGATGTTTATCCTCAAGGGGACATTTAACACAAGTGGGG TAAATTTTGGTAAGGTGTTCCACCAATCATTTAGCCCCAAATTTTTACCAATTTTTTAATGTGAGTGCTATCGTTGTAAA ATTTGACCTTCTCATTAAAATGCTTTAAAAGCCTGGTACGATAACCGTAGCGTGGAAGTAAACTAGTTTAAGGATGGTAG CATTAAAATATGTATTTTGTGAGTGAATGCCAAATTGAGTTCTATGAGAAAAAAGGATGGTAATAAGTAACAACCGTTTG TGTCTCTAATTCAGGAGGTCAGAAAAGGAGGTGGCCATCTCCTTGTGGCAACAGATATAGCTGCTCGAGGAGTTGACCTT CCAGAAATGTCTCACATATACAACTTTGATCTGCCAAGGTCCGCCGTTGATTACCTTCATCGAGCAGGGAGGACTTGTAG AAAACCCTTTTCTGACATCAATTGTACTGTTACCAGCATTATAGTTCCAGAGGAGCGATTTGTTCTGCAGAGATATGAAA ATGAGTTGATGTTCATTTGTGAAGAGATTATTCCTTAA
CDS sequence (LotjaGi4g1v0353200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGCAGCAAAGCCAACTGGAGTTGAGGGGGAGCAGAAGTCATGTACCGTCATGGCTCTGTTAGATGGAGGAACATT GAGAAGACACAAGAGTTGGTTAAAGGCAGAGCCTCCAGCAGTAATAGTCGCAACAGTTGGGAGTTTATGCCAAATGCTTG AAAGACACTTGTTTTCACTCGAAACTGTGAGGGTGCTGGTTGTTGATGAGGTTGACTTTATTTTCAATTCTGCCAAGCAA GTGAGTTCTCTTCGGAAGATTTTGAATTCATCTTGCAATAACCGCCAGACGGTTTTTGCGAGTGCATCTATACCACAACA CAATCGATTTCTTCATGACTGTGTTCAGCAGAAATGGACTAAGAGTGATGTCATCCATATTCATGTCAGTCCAGTGGAGC CCATGCCATCTCGCCTATGTCATAGATATATAATATGCGATACAAAAAGAAAGCTACAAACCCTGTTATCCTTGATACAG TCTGACACACCTGAGTCTGGCATTATATTTGTTGGTGAGCAGTCTGAGAAGTCGAAAAAGGCTGGAAATGCTCCATCCAC ATCCCTTCTCATTGACGTCCTAAAATCATCATATCAAGGTTCTTTAGATATCCTCCTTCTCGAAGATGAAATGAATTTCA ACTCACGAGCATCTTCTCTGTTGGAGGTCAGAAAAGGAGGTGGCCATCTCCTTGTGGCAACAGATATAGCTGCTCGAGGA GTTGACCTTCCAGAAATGTCTCACATATACAACTTTGATCTGCCAAGGTCCGCCGTTGATTACCTTCATCGAGCAGGGAG GACTTGTAGAAAACCCTTTTCTGACATCAATTGTACTGTTACCAGCATTATAGTTCCAGAGGAGCGATTTGTTCTGCAGA GATATGAAAATGAGTTGATGTTCATTTGTGAAGAGATTATTCCTTAA
Protein sequence (LotjaGi4g1v0353200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLAAKPTGVEGEQKSCTVMALLDGGTLRRHKSWLKAEPPAVIVATVGSLCQMLERHLFSLETVRVLVVDEVDFIFNSAKQ VSSLRKILNSSCNNRQTVFASASIPQHNRFLHDCVQQKWTKSDVIHIHVSPVEPMPSRLCHRYIICDTKRKLQTLLSLIQ SDTPESGIIFVGEQSEKSKKAGNAPSTSLLIDVLKSSYQGSLDILLLEDEMNFNSRASSLLEVRKGGGHLLVATDIAARG VDLPEMSHIYNFDLPRSAVDYLHRAGRTCRKPFSDINCTVTSIIVPEERFVLQRYENELMFICEEIIP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 122 | 122 | 10.446 | ||
Gene3D | 5 | 128 | 124 | 3.5E-17 | – | |
PANTHER | 14 | 305 | 292 | 2.9E-82 | – | |
PANTHER | 14 | 305 | 292 | 2.9E-82 | – | |
Pfam | 17 | 106 | 90 | 4.1E-9 | ||
CDD | 20 | 115 | 96 | 4.0701E-18 | – | |
SUPERFAMILY | 21 | 295 | 275 | 3.53E-32 | ||
Gene3D | 134 | 306 | 173 | 3.2E-26 | – | |
CDD | 141 | 270 | 130 | 3.40701E-28 | – | |
Pfam | 151 | 270 | 120 | 3.0E-17 | ||
ProSiteProfiles | 151 | 308 | 158 | 14.224 | ||
SMART | 188 | 272 | 85 | 2.3E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi4g1v0353200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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