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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0353900 |
| Transcript ID | LotjaGi4g1v0353900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT2G01970.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9ZPS7|TMN3_ARATH Transmembrane 9 superfamily member 3; TrEMBL-Plants: tr|I1K3B1|I1K3B1_SOYBN Transmembrane 9 superfamily member; Found in the gene: LotjaGi4g1v0353900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73237296..73242965) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAGAGAGCAGAAGCAGTGGAAGCTAGCATGGGAAGAAGCAAGTGGTCAACGTTGCTCTTCTTCGTTCTCGCAATCCT GCACGGAACTCACGTGAGATCCGATGCCTCCGATCACCGTTACAAGGACGGTGACCTCGTTCCTCTCTACGCCAACAAAG TCGGTCCATTCCACAACCCCAGGTTCGATCTCTCTCCTCTTCCATTCCAATCGCTTTGTCTTGCACAGATCCACATGCAT TCATTTCATCACTCTCCCCCCTCACTTTCTCCGTTGCCCAACACTTGGTTTCCACGTTTTCCACCGTTTGAGATGATGGG TCGTCGTCAAAATCTGATCTTGTGTTGAAATTCTCCTTCCATGATGGTGGTGGTGGTGTTTCGTTTCTGTGTGTTTGTTT TATGAGATGAGAAAGTGTTTATTAAATTTTGTTGTCGTTTTCTGATTTCTTGTTCATTTAATTTGATTGATTTCAGTGAA ACGTATCGATACCTAGACCTGCCATTCTGTGTAACAGGTAACTATCTGAATTTGTGCTTTAGATTTTGGTATTTATTACT TCCTTTAAAGCTCATTATTTGTGTGATTGTGTCGGTGGTTTCTCTTTAGTTTTTCTAATTATGGATATCAAAGTGCTATA TAACTTGCAAAATTTCATTTCATTTTATACTTATTTGTTTGCTGTTTCAGTTTTAGCGGGTTAGAATGCTCCATTGCTTT TTCCTGTTGAGATAAACATGTTGCTATGAATGTTTAATTAATTTTTCCAATTTTCCATACTTTGATGGGTTCTTAATTCA TGTCATTCTAAAATGAGTACACCCAAATGGCAGGTAAAGAGAGAGAGAAAACGGAAGCACTTGGCGAGGTGTTGAATGGA GATCGCCTTGTTAGTGCTCCGTATGAGCTTGATTTTAGAAAGGAGAAAGACTCTAATGTTGTGTGCAAGAAGAAGCTCAC AAAGGCGCAAGTTGCTCAGTTCCGAGAAGCAGTTAAGAAGGACTATTATTTCCAAATGTATTATGATGACTTGCCAATCT GGGGATTTATTGGAACAGTTGACAAAGAAGGAAAGACCGACCCTAGCGAGTACAAGTATTTTCTTTACAAGCACATTCAG TTTGATGTTCTGTACAACAAAGATCGTGTGATTGAGATCAGTGCCCGGATGGATCCTCATTCCGTTGTGGACCTGACTGA GGACAAGGAAGTTGATGTTGAGTTTATGTATACTGTAAAGTGGAAGGAGACAGATACTTCTTTTGAGAAGAGAATGGATA AATACTCGCAGTCTTCTTCTCTGCCACATCACTTGGAGATTCATTGGTTCTCAATCATAAACTCATGTGTAACAGTTCTT CTTTTGACTGGTTTTCTGGCAACCATTCTCATGCGTGTCTTGAAGAATGACTTTATGAAGTATGACTTACTTGCTCATCT ATCACCAGATTGTCATCTTATTATTACCCATGGCATTGTTTTATTTAATGTTTTCCCCCTTGTTTCTTGTTGTCTGCTCC AGATATGCTCAAGATGAGGAAGCTGCTGATGATCAGGAGGAGACGGGATGGAAGTACATTCATGGTGATGTTTTCCGGTT TCCTAAGTACAAGTCCTTGTTTGCAGCAGCCCTTGGTTCTGGCTCTCAGTTATTCACTCTGTAAGAATCTTTTTGATGTC TCTTCTCCCCTTCTGTGCTGAAGCGTTTTTCCTCTCTACATTATAAACTTAAGTGTGTGTCATTTTCTATTCCTTCGTGC TTGTGCAGTACAATCTTCATTTTTATGCTTGCACTGGTTGGTGTATTTTATCCCTATAACCGAGGAGCTTTGTTTACTGC ACTGGTGGTCATTTATGCTCTTACATCTGGCATTGCTGGCTACACTGCTACTTCCTTCTATATTCAACTTGAAGGATCTA ACTGGGTATGTATAGACTGCTTGTGCTTGTGGTTGCACAGCGGTTTGTATTTATTGATTCAATTGTTGTGAAGTTAAGTT ATATGATTTATACGTCTATTTTCTTGTTTGACAGGTTAGAAACTTATTGCTGACAGGGTGCCTCTTTTGTGGCCCTCTTT TCCTCATGTTCTGCTTCCTTAACACAGTTGCAATTGCTTATAGTGCAACCGCTGCTCTTCCATTTGGCACAATTTTGGTG ATAGTCCTAATATGGACATTGGTTACGTCGCCATTACTTGTGTTGGGTGGTATTGCAGGTAAAAATAGCAAAACTGAGTT CCAAGCTCCTGTCCGCACTACAAAGTATCCCCGAGAGATTCCACCTCTGCCTTGGTACAGAAGTACCATTCCACAGATGG CAATGGCAGGGTTTCTCCCTTTCAGTGCCATATACATAGAGCTGTACTACATTTTTGCTAGTGTATGGGGCCACAGAATT TATACTATCTACAGCATACTCTTCATCGTCTTTATTATTCTGTTGATTGTCACCGCGTTCATCACTGTGGCTCTGACATA TTTCCAACTTGCTGCTGAAGATCATGAATGGTGGTGGAGGTAACTTATCTTATTGCTGCCTTCTACTGTAGTTTTTTAGC GTTTTTTACTGCCTATATTATTGTCTAAGCTTATATCAGCAATTGAATTAGTTTTCATATTGTCTGTTCTAGAGTTAAAA GAAATTGTCAATGGTTAGGAAAAGAGAGAAGAAGATTAGAATAGAAGGTGCAAGCTTATTTGTATTTTTACTACTGATAT AGTAAACAAGAAATACCTCTTCTATCTTCAGTTTCTAACTATGGAATTTGAAAAGAATTCTTTACTATAGTGGCATTCGC ATAATTTTTGCATGAAATGTTAAAAAATTTAAGGTAAGAAAATGGTACTAAATCATAATATATAGTATCAGATCATTGTT CATTTTACTTTCTCCATTCTTCTCTTTTTTCTCATCCTGTTAATGTTACTCTCTTAACATGACAAACACATGTATGTTAA CTGAACCTAAGTATAGAATCAACTTTATGCAATTTATGTTTTATACTAAGTTGCAGTGTTGGTAAATGCCAGCCATTGTG GTATTTTAAGGCCCTGGCATAGTGGCTTTCACCTGGCGGGCCTCGGTGGACACTATTCCATGGCGGGCATGGCGTCTAGT GTCCATGATGGAAAAAACACCAAAATCCAATTTTTTTTTGTTGAAAAAAGACCAATAACATAAACCCACCCATTTAAACC CTAAACCCCATAATTCAATTCTCCTTTTTCTGTTATGTACTTCTCTGTTTTTAAGTCTCTACTCCCTTCTCTTCCTCCTA TTCTATTCTTGATATGTGTGTATATATATATCTGATTTGATATTTCGTGACTTCCTAAGTTTCTCTAGCTACAATTGACT TCGCTTTTTGGTACATTTTTTCCACAGATATTGGTACTGTAATTTTCTGTAAAATGTATTTGTATTTTGAATCATGTATC TTAACTATGTCAACCTAAACCATTAATTTTCTCTTCTACTTTTGAGCACACTTGACAGACTCAGGGGCATTGAGCTGCGA TTGATTCAGGGTAGAGTAGGTGGAAAGTACAAATCCAGTGTTTATTATATCTAAAATGATTTCTTATTTGACCCTTTTTC GTATTCCATCTACTCAAACTAACAGACCCTTGAAACAGGGCATCATAGTAAACTCGAATGGTTGAGATTGCTTGAGAGGA ACCCTCTCAGCACTAAAATTTATAATAGTTAAATAAAATACCAGTCACAATTTGAAAATGGTACACCCTTAGTCCAAGTC TATAATAGGAGGAAGAAACAACATGGAACAGAATGAAATGGGCCAAAGGAACAGTTTGGGCCACTGTAGAGAGGATAAAT AAGGAGGGAATTGCAGGAGCTCTTGATTTTAGGGATGATCGGCACTGTAGATGAATGGACATGGAAAGGAAGGGTCAAAG AAAGAGGCCTTGAAATCATTAGTAGTTAAGCCAGCTGGTACAAGCTGATTGGAATGGAAATTACTTGTGTATCAATGTAG GGTAAGTTGGAGGAAGGGGAGAGCGAAGAGGCAGACAATTCTGTGGTGAAGTGAGAAGGGTCGGAGTTTCCTTCGTGTTT GGAACCACTGGATAGTTATTTTTGTTGGATCTGGATCCTCTAAAGTGAAAATCTCACTTTATATGGTAAAGTAAGTCACA TTTACCGTTGATTCATTGACTTTTCAAAGTAGGTTATCATTATTAATGGTCATGATGACTTACTCTACCCTCTAAAGTGC CTCTCACGTTTGAGGAGTCTAACCCATATTTGTTTCTAGTGTCTATTGGCACTAATGAATTGCCTCTGAATTTAAAAGTT CTATTAGAGTACAACTCAAATGCCTAAATCCCTAAAATTTAGGGATTGATATATCTCCTAACTAAAAATGCATTATACAC CTAATTTATGGGGTAATATTAGATTAACTATACAACAATATTAATGGTCTGCCTCAAGATGGTTACCTATATCAACAATA TGCATCAAGCTTGTTACTTATGTGTTACCCTAGGACCCTGAATAGACTTAGAGAAGATGTCTACTAGTCGATCATTAGAA TTCATAAAGGACGCGGTAGTTTCTCCTAAAAGTAAAAAGAGCTTTTTCTCAAACAAATAAAAAAACTGTGTCGGATGTAA TGTGAGAAGTTACTTGTTTGTTGCAACTTTCATACCAGCTTATTTCGAAGAACAATAATTTTTGAACATTTGCTTCAACC ATATTAGTTAACATGTGTAAAGAGCCATGGCTCAATACTCTGCTCCTGCACTAGATCTGACGACTACATTTTTTGTCTTG CTTTTCCATGAGATACAATTTCCTTTAATAACATTATATCCTGAAGTTGATTATTGTTGGAAATAAACTGGTAGAAAGTG AGAAAATATGAGGAAATGAGAGAAAAGTTCAGAAAGAATCTTCTGAATTCATTCATTGAATAGTGTGTACTGCACTGCTA TATATAGTTGCAGTGTGAGAGATCTAACAATATGTAACAAATCTAACTGAAAGCTGTTGTCTCTACTTGAAACAAATAAT GTCATCCACATGGCCTACAATTTCGGTGTAGTGATTAAAGATGTGTTTACTGAATACAATGTTATATGCTTCACTATGAA CCACACCAAATTGCTATATAATTGTGTGAATTGTGAAACCATCCAAACCATGCTCATGGACATTATCTCAATTCTCAAGC TACATAGGGACTCGTGGGATAAACAATTGAGTCTTGATTCTCCTTTAGCAACATCCCTGATTTATGAAATGTGGAATTGA AATGTTTTAGGATTTTAGCCTATATTGTGATTGTTATTTTCTTTTCTATTCAATAACCAAAGATGTTCTGAATCTATTTA AAGTATATGCAACTTAAACTTTGTAGACAATCCATTTGCCTTCGTTACTGGACGTTTTCTTCATGATATTGATGTCTGTT TGTGTTACAGGTCTTTCCTTTGTGGTGGATCAACTGGCTTGTTCATCTATGGTTACTGCCTGTATTATTACTATGCACGA TCAGACATGTCTGGTTTCATGCAAACCTCGTTCTTCTTCGGTTACATGGCCTGCATCTGCTATGGCTTCTTTCTCATGCT CGGTGCTGTAGGTTTCCGTGCCTCGCTGCTCTTTGTCCGCCACATATACAGGTCCATCAAGTGTGAGTAG
CDS sequence (LotjaGi4g1v0353900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGAAGCAAGTGGTCAACGTTGCTCTTCTTCGTTCTCGCAATCCTGCACGGAACTCACGTGAGATCCGATGCCTC CGATCACCGTTACAAGGACGGTGACCTCGTTCCTCTCTACGCCAACAAAGTCGGTCCATTCCACAACCCCAGTGAAACGT ATCGATACCTAGACCTGCCATTCTGTGTAACAGGTAAAGAGAGAGAGAAAACGGAAGCACTTGGCGAGGTGTTGAATGGA GATCGCCTTGTTAGTGCTCCGTATGAGCTTGATTTTAGAAAGGAGAAAGACTCTAATGTTGTGTGCAAGAAGAAGCTCAC AAAGGCGCAAGTTGCTCAGTTCCGAGAAGCAGTTAAGAAGGACTATTATTTCCAAATGTATTATGATGACTTGCCAATCT GGGGATTTATTGGAACAGTTGACAAAGAAGGAAAGACCGACCCTAGCGAGTACAAGTATTTTCTTTACAAGCACATTCAG TTTGATGTTCTGTACAACAAAGATCGTGTGATTGAGATCAGTGCCCGGATGGATCCTCATTCCGTTGTGGACCTGACTGA GGACAAGGAAGTTGATGTTGAGTTTATGTATACTGTAAAGTGGAAGGAGACAGATACTTCTTTTGAGAAGAGAATGGATA AATACTCGCAGTCTTCTTCTCTGCCACATCACTTGGAGATTCATTGGTTCTCAATCATAAACTCATGTGTAACAGTTCTT CTTTTGACTGGTTTTCTGGCAACCATTCTCATGCGTGTCTTGAAGAATGACTTTATGAAATATGCTCAAGATGAGGAAGC TGCTGATGATCAGGAGGAGACGGGATGGAAGTACATTCATGGTGATGTTTTCCGGTTTCCTAAGTACAAGTCCTTGTTTG CAGCAGCCCTTGGTTCTGGCTCTCAGTTATTCACTCTTACAATCTTCATTTTTATGCTTGCACTGGTTGGTGTATTTTAT CCCTATAACCGAGGAGCTTTGTTTACTGCACTGGTGGTCATTTATGCTCTTACATCTGGCATTGCTGGCTACACTGCTAC TTCCTTCTATATTCAACTTGAAGGATCTAACTGGGTTAGAAACTTATTGCTGACAGGGTGCCTCTTTTGTGGCCCTCTTT TCCTCATGTTCTGCTTCCTTAACACAGTTGCAATTGCTTATAGTGCAACCGCTGCTCTTCCATTTGGCACAATTTTGGTG ATAGTCCTAATATGGACATTGGTTACGTCGCCATTACTTGTGTTGGGTGGTATTGCAGGTAAAAATAGCAAAACTGAGTT CCAAGCTCCTGTCCGCACTACAAAGTATCCCCGAGAGATTCCACCTCTGCCTTGGTACAGAAGTACCATTCCACAGATGG CAATGGCAGGGTTTCTCCCTTTCAGTGCCATATACATAGAGCTGTACTACATTTTTGCTAGTGTATGGGGCCACAGAATT TATACTATCTACAGCATACTCTTCATCGTCTTTATTATTCTGTTGATTGTCACCGCGTTCATCACTGTGGCTCTGACATA TTTCCAACTTGCTGCTGAAGATCATGAATGGTGGTGGAGGTCTTTCCTTTGTGGTGGATCAACTGGCTTGTTCATCTATG GTTACTGCCTGTATTATTACTATGCACGATCAGACATGTCTGGTTTCATGCAAACCTCGTTCTTCTTCGGTTACATGGCC TGCATCTGCTATGGCTTCTTTCTCATGCTCGGTGCTGTAGGTTTCCGTGCCTCGCTGCTCTTTGTCCGCCACATATACAG GTCCATCAAGTGTGAGTAG
Protein sequence (LotjaGi4g1v0353900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRSKWSTLLFFVLAILHGTHVRSDASDHRYKDGDLVPLYANKVGPFHNPSETYRYLDLPFCVTGKEREKTEALGEVLNG DRLVSAPYELDFRKEKDSNVVCKKKLTKAQVAQFREAVKKDYYFQMYYDDLPIWGFIGTVDKEGKTDPSEYKYFLYKHIQ FDVLYNKDRVIEISARMDPHSVVDLTEDKEVDVEFMYTVKWKETDTSFEKRMDKYSQSSSLPHHLEIHWFSIINSCVTVL LLTGFLATILMRVLKNDFMKYAQDEEAADDQEETGWKYIHGDVFRFPKYKSLFAAALGSGSQLFTLTIFIFMLALVGVFY PYNRGALFTALVVIYALTSGIAGYTATSFYIQLEGSNWVRNLLLTGCLFCGPLFLMFCFLNTVAIAYSATAALPFGTILV IVLIWTLVTSPLLVLGGIAGKNSKTEFQAPVRTTKYPREIPPLPWYRSTIPQMAMAGFLPFSAIYIELYYIFASVWGHRI YTIYSILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYGYCLYYYYARSDMSGFMQTSFFFGYMA CICYGFFLMLGAVGFRASLLFVRHIYRSIKCE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 24 | 7 | - | – | |
| Phobius | 25 | 226 | 202 | - | – | |
| PANTHER | 33 | 592 | 560 | 0.0 | ||
| PANTHER | 33 | 592 | 560 | 0.0 | – | |
| Pfam | 54 | 549 | 496 | 4.5E-170 | ||
| SUPERFAMILY | 225 | 409 | 185 | 2.49E-6 | ||
| Phobius | 227 | 250 | 24 | - | – | |
| TMHMM | 229 | 251 | 23 | - | – | |
| CDD | 244 | 409 | 166 | 3.95384E-4 | – | |
| Phobius | 251 | 291 | 41 | - | – | |
| Phobius | 292 | 320 | 29 | - | – | |
| TMHMM | 298 | 320 | 23 | - | – | |
| Phobius | 321 | 325 | 5 | - | – | |
| TMHMM | 325 | 347 | 23 | - | – | |
| Phobius | 326 | 350 | 25 | - | – | |
| Phobius | 351 | 361 | 11 | - | – | |
| Phobius | 362 | 387 | 26 | - | – | |
| TMHMM | 362 | 384 | 23 | - | – | |
| Phobius | 388 | 392 | 5 | - | – | |
| Phobius | 393 | 415 | 23 | - | – | |
| TMHMM | 397 | 419 | 23 | - | – | |
| Phobius | 416 | 452 | 37 | - | – | |
| TMHMM | 451 | 473 | 23 | - | – | |
| Phobius | 453 | 472 | 20 | - | – | |
| Phobius | 473 | 483 | 11 | - | – | |
| Phobius | 484 | 510 | 27 | - | – | |
| TMHMM | 486 | 508 | 23 | - | – | |
| Phobius | 511 | 521 | 11 | - | – | |
| TMHMM | 518 | 540 | 23 | - | – | |
| Phobius | 522 | 542 | 21 | - | – | |
| Phobius | 543 | 553 | 11 | - | – | |
| TMHMM | 553 | 575 | 23 | - | – | |
| Phobius | 554 | 582 | 29 | - | – | |
| Phobius | 583 | 592 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0353900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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