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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0357300 |
| Transcript ID | LotjaGi4g1v0357300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Geranylgeranyl pyrophosphate synthase; TAIR: AT4G38460.1 geranylgeranyl reductase; Swiss-Prot: sp|Q39108|GGR_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic; TrEMBL-Plants: tr|A0A1J7GK08|A0A1J7GK08_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0357300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73604625..73607153) extracted from Lotus japonicus Gifu genome v1.2.
CAATGGAGTATTAAGATTTGTCCTAAGTCCTAATTTTGGTAGGGACAGGTTGGGGCACTTACTTCTACGGCTCTAACCCT ATCACATGTAAAAACCACCATTGTTGTTTTGTGCGATCTCATCACACTATACCACACCACTGCTTATCACCACGCCATTG AAACCCAAACCTCACTCACCACTTTCCCCTATTTCCACCATATCGGTAATGCATCTCAACTCTATCTCTTTCTCTGATTT TCACAATCGAACTCAGCTTACACCGACTTGATCTTGTTTCAATTTACTTTCTCATTGAAATTCGGAATTGTTAATCATAG GGACTGTACTCTGTTAGTTTTTGTTATTTTGCAGGTTTAAGATTCAGTAAATTCATGTTCTAAACTGAGTTTGTGTGTGT CGAAAACTAGAATGACCCAATGCCTAAAGTTGGGTATAAATTTTTCATGCCCACTTATTGTTTGATGAAATGTCTTGAAA GGATATTCAAGTTACTTATATAGCTGAGAATGGTAGGGATAATGTTAGATTTGTTTAAGCGACTTAGTTTGCGATGTGAT GCGGAATGTACTTGATAACATGTTTTCTTTCTCTGTGTTTTTCTGTTTTTTATATGTAGTTGCAGATGGCTCCTTTTGCT ATAGCAACATTGCCCTCTTCATATATGTGCCACATCAGAAAGCCTCGAAACATTGTTTTTCCAATTCGATGCTCCACGGC TGCTCCTTCTCCTTCCTCTGTTTCCATTCGGGCTAAAGCTGCTCATTTTGATTTGAAGACATATTGGGCTTCCCTGATGG TGGAGATCAATCAGAAGCTGGATGAAGCTGTTCTAGTTAAGTTTCCTCCTAAGATATATGAAGCAATGAGGTATTCAGTC CTTGCCAAAGGTGCCAAGCGAGCCCCGCCTGTTATGTGCATATCTGCTTGTGAGCTCTTTGGAGGCAGCCGCTTTGCTGC CTTCCCCACTGCCTGTGCCCTTGAAATGGTAATCTTCTTTCTATACCCTGCTTGTGAGCTATTTCATTTTGATTCTATTG TAAAAATTTCTAGGTTTGATTTTTCATGTTAAGACTTAATATATTTGAGAGAGTTTGGTTTATCACTGTCACAAATTTAG TTCTTTATGTTATAGAGCTACGAGAGTTTTCTCTCAATCAAACAAATCTGTTCCTAATTGCCTGCCGTGAAGGGGGTGGG CTTTCTTTTTCTTTGGAATTCCATTTTCTTTCCAATTTTTATTATTAGAATGAAATTTGCTGCATGTTTAGTTGTTATAA TGTTTATTGCTCATGTAAATAACTGTTTTGAATTTGATATTTAGCTTGCTGTATCTGCATAAAATGATACCTAAACTGAC CTTTAAATATCTGTTAAGAATCTTTGGTTATAATAGTAGTTTCATTTGCATTGTGCTTGAACATAAAATTTTGTTTGAAT CTGTGTTTGGAACTCCTTATGGGACACGAAAATGGGATTTATGAAGTAATGATGCTGACATGTACTTCGTTAAAGAAGAT AATGATAATAAACTGAATGAGTTTGAGTATTTTAAATAGTTATAAATATGAATCACTGAACTTATATTTTAGTTGCAAGC AGGTTCATGCGGCTTCATTGATACATGATGATCTTCCTTGCATGGATGACTCCCCCTCACGCCGTGGCCAGCCCTCAAAC CACGCCATCTATGGTGTTGATATGGCAATTCTTGCGGGTGATGCGCTCTTTCCCCTCGGATTTCAGCATATTGTTTCCCA TACTCCCTCTGACCTTGTGCCTGAGCCCCACCTCCTTCGTGTGATTGCTGAGATGGCTCGATCTGTAGGCTCCACTGGAA TGGCTGCAGGGCAGTTCCTGGACCTTGAAGGGGGGCCCAATGCAGTTGGATTTATACAAGAAAAAAAGTTTGGTGAGATG GGGGAGTGTTCTGCTGTGTGTGGAGGATTGTTAGCTGGTGCTGAAGATGATGACATAGAGAGACTGAGGAGGTACGGGAG AGCTGTTGGAGTATTGTATTCAGTTGTGGATGATATTTTGGAAGCGAGAGAGAATCCTGAGGGAGGTAATGACAGGAAAA ACAAGGAGAAGAGTTATGTAAAGGTTTATGGTGTCAAGAAAGCAACAGAGATGGCTGAAGAGCTTAGAGATAAAGCTAAG GAAGAATTGGATGGATTTGAGAAGTATGGGGAGCTAGTCTTTCCTCTCTACAGTTTTGTGGATTATGCTTTTGATAGAAG TTTCAGTGTTGGTGAAGCTAGTGGGTGATGGGTTCCAGATTCTTAGTCATTCATGTTTCTTTTTTTGATTTGAATCCTTG GGAGTCGAATATTGTATTGCATAGAGAATAACTTATATAATTTAGAACAGGTAACTGCAGATCTAGAGGGATGAGGATGA AGCATGGTACCTGAAGAGAAAAATGTCTACATAGTAATAGCATGTATCATAAAATGCCATTTATGATTCCAAGTTAACAT TCCAAGACCTTTTATCACTAATATTATGTTTTTTTTATTATATTTGATA
CDS sequence (LotjaGi4g1v0357300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCTTTTGCTATAGCAACATTGCCCTCTTCATATATGTGCCACATCAGAAAGCCTCGAAACATTGTTTTTCCAAT TCGATGCTCCACGGCTGCTCCTTCTCCTTCCTCTGTTTCCATTCGGGCTAAAGCTGCTCATTTTGATTTGAAGACATATT GGGCTTCCCTGATGGTGGAGATCAATCAGAAGCTGGATGAAGCTGTTCTAGTTAAGTTTCCTCCTAAGATATATGAAGCA ATGAGGTATTCAGTCCTTGCCAAAGGTGCCAAGCGAGCCCCGCCTGTTATGTGCATATCTGCTTGTGAGCTCTTTGGAGG CAGCCGCTTTGCTGCCTTCCCCACTGCCTGTGCCCTTGAAATGGTTCATGCGGCTTCATTGATACATGATGATCTTCCTT GCATGGATGACTCCCCCTCACGCCGTGGCCAGCCCTCAAACCACGCCATCTATGGTGTTGATATGGCAATTCTTGCGGGT GATGCGCTCTTTCCCCTCGGATTTCAGCATATTGTTTCCCATACTCCCTCTGACCTTGTGCCTGAGCCCCACCTCCTTCG TGTGATTGCTGAGATGGCTCGATCTGTAGGCTCCACTGGAATGGCTGCAGGGCAGTTCCTGGACCTTGAAGGGGGGCCCA ATGCAGTTGGATTTATACAAGAAAAAAAGTTTGGTGAGATGGGGGAGTGTTCTGCTGTGTGTGGAGGATTGTTAGCTGGT GCTGAAGATGATGACATAGAGAGACTGAGGAGGTACGGGAGAGCTGTTGGAGTATTGTATTCAGTTGTGGATGATATTTT GGAAGCGAGAGAGAATCCTGAGGGAGGTAATGACAGGAAAAACAAGGAGAAGAGTTATGTAAAGGTTTATGGTGTCAAGA AAGCAACAGAGATGGCTGAAGAGCTTAGAGATAAAGCTAAGGAAGAATTGGATGGATTTGAGAAGTATGGGGAGCTAGTC TTTCCTCTCTACAGTTTTGTGGATTATGCTTTTGATAGAAGTTTCAGTGTTGGTGAAGCTAGTGGGTGA
Protein sequence (LotjaGi4g1v0357300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPFAIATLPSSYMCHIRKPRNIVFPIRCSTAAPSPSSVSIRAKAAHFDLKTYWASLMVEINQKLDEAVLVKFPPKIYEA MRYSVLAKGAKRAPPVMCISACELFGGSRFAAFPTACALEMVHAASLIHDDLPCMDDSPSRRGQPSNHAIYGVDMAILAG DALFPLGFQHIVSHTPSDLVPEPHLLRVIAEMARSVGSTGMAAGQFLDLEGGPNAVGFIQEKKFGEMGECSAVCGGLLAG AEDDDIERLRRYGRAVGVLYSVVDDILEARENPEGGNDRKNKEKSYVKVYGVKKATEMAEELRDKAKEELDGFEKYGELV FPLYSFVDYAFDRSFSVGEASG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 39 | 339 | 301 | 3.2E-168 | – | |
| PANTHER | 39 | 339 | 301 | 3.2E-168 | – | |
| Gene3D | 40 | 335 | 296 | 3.1E-82 | ||
| SUPERFAMILY | 51 | 314 | 264 | 3.7E-60 | ||
| CDD | 74 | 333 | 260 | 8.80938E-61 | – | |
| Pfam | 76 | 307 | 232 | 3.9E-35 | ||
| SFLD | 78 | 325 | 248 | 1.541E-44 | – | |
| ProSitePatterns | 127 | 143 | 17 | - | ||
| Coils | 292 | 312 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Isoprenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. |
Expression pattern of LotjaGi4g1v0357300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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