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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0366600 |
| Transcript ID | LotjaGi4g1v0366600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT1G27340.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9FZK1|FBX6_ARATH F-box only protein 6; TrEMBL-Plants: tr|A0A0B2SJF9|A0A0B2SJF9_GLYSO F-box only protein 6; Found in the gene: LotjaGi4g1v0366600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74652932..74656939) extracted from Lotus japonicus Gifu genome v1.2.
ATTCTGGAATTCGAGAGTCTAGTTTCTCCCCATAAAACACAACTTCTAAATGAAACAAATGAACAATCACACCCCTTATT TAATAACCACCAATAGACAGTTACAAACAAACACAACTAACAAATAAAATTTGTCCCAAATTAAATTAAAGCAAGCCCTA ACTGTTGTTGCAGGCATTGTTCATGCGCACTATTCACACAGTTTCTAATCACAAAATGTTTGTTCAGACATGTCATGTTT AAAAAGAGTGTGTCGCAGATCCGAGAGATGATGCTCAAGTACTGAAAAGTTAATCGTCTTCATACTCCACGAGAGACAAA CCAAGTTGCAGATTGTTTGGCTAATATGACTCACTATCTAGAGTTGAATACTCACGTCCATGATGATCCTTCTCCTAGCC GTAGGAACTTAATGCTTTTTTATTACATGGGTGTTGCCTACTCGAGGTCGTTTGGTGTGTAGTTTTTCTGAGTCTAGTCC CTCCCAATAGCGAAATGAAGAAAAGTGGGTTGTAAAATGAAGTTGTATGTGTGTGGAGGCATATAATAAATACCGCACGG GTGAGAGAGCGGTGAGTGAAACTCGTTTGTGTGTCGTACGCTGTCAGGCAACGTGGAGAATGAAGAGTGGATGAGAAGGA AAACACAGAGAGAGAGAGAGAGAAGAGTGCGTGGTGAGTTAGAGAGAGAAACAAAACAAAACAAAACAAAACAAAACAAA ACAAACAGTAAAGAGTGCGTGAATTAGAGAGAGAAAGAAACTGTGTGAGTGTGTTGGGTTTGGGGCATGGAAGAAGGGGT TGCCATGCTTCGGCACCTCATCGGACAGTTGAAGCATCTCTCGGAGTCGGACCCCTCACAATCTCCTTCATTCATCCTTC TGCAACATCACACTAATCCTCAACCGCCACCCAGGTCCCCCTCCTTACTAGATCTACTTTCCGTTCAATTTTTGCTTCAT TTTTTGTCCTCTTCCCTTTCCTCCACCGCTTTTAGGTTTTCTCTCCTAACTTTATAAATATATATTCTTCTCTTTCACTC ATGTTTTACACAACCCACTTCGGTTACTTTGTTTCTTTCTTTCTGCTCTGCTCTGTTGCATAACCTAATGCAAAATCCAC TTCCATAGACCATGTGAGATTTTCCTTTAATTTTCTAGTTAGAGAATGAATTGAGAAATTGGTGTTGTCCTGTGGATTAT AGTGGTTTTTTCTGTTTGCTTATTTTGTTTTTATTCAAGTCTTGATTCTAGATGGATATATAGAACATGTACAAGATCTG GTGGCATGTTTTTTTGTAAGAAAGTCTTTGATTGTTATTGTTGTTTAGACAAATAAAACAAAAAAACTCTGATGATCAGG CTAAAGTTGATAGTTCTTAGTTGAACATTGTTCTGTTTCTTCTGTTAGTCTTAACTTGGAAGTCTCAATGTTGTCTGGTA GTTTGAGTGTGTTTAAAGTAAATGATCACTTTAAGTAGAGAAAGGGGAAGTGGTTGACAGGATTCTGACACAAATTAGGT TATGAATATGAATCACCATGATTTAGTGCATGTTTGGAAATCTTTCTACAATTGATTCTAAAGTCAGAATCAGTTTTGGG GAGAAGCTTCTGTGTGCAGCTTTTGGGTTCCGGAATTGATTCTGAGGAAAGAGAACATAATCCAAACATGGTATTAGTAA CATGTAGACATGTAAGTAAGAAGCATACAACAATCTTTTCTAGCGATAAGGGTGCGAAAAACATTGTTAGTCAAAGAGAG GCACGTGTGAGATCACCACTGGGTGTAGTCTAGAAGCTTCCACATCATGTATGTTTATTACTATGTAAGATATTGATACT ATTTGATTCTAAGCTTTATGAAGGATGCTCTTACACTACAAACTTGGAAGTAAGCAATACTTGTAAATGTAAAGATCACA GTCCAATATGTTCAGTTAGTAGTATTTAGTATTATATCTAGTGTATTCATATCTGAACATTTATATTTTGAAGCGTGTGC TTTGATAGTCAATATCGCATAAAAGTTACTTTTTCTGGATTTCCTGCGTTGTTTCTTTGTCGTAGAGCCCGTTTGGATAC AGACTTATTGAAGCTTATCTACTACAAAAAAAAAAACACTAAATAAGCTCCAATGAGTGCTTGGTTTGCATCCAAACGAG TTATATAGTATTATATGAAGTAAAAACCTAGCAGTAGAAACTTAGCGCCACACTAGCTTTCCTTCTGCGTTCAAGTTGGT ATAATTGTGTACCTTATTGATCCTTGAAATATGAGGTTAGCTCAGTCTAAATGTTGGGCTGGGATACCAACTTGTTTATT ATTTTCCTTTTTGGTTATGCTTTTTTTCCTATGATTCATGTTGGTCTCTGTTTTCATGTTTGTTCTACTACTTCATAGTT TGAAGTGTATGAATATCTTTGGTCATCCTTTTCACAGATGGTCCTTCTTTGACATTGATGATAACTCCGTAGATGACTTC TGTGACCTTGTAATGACAGCTGGAAAGTCTGCAAGTTTCAGTACAATGGACCTTGTAAAGCATCCGTCTACTAAGAAGTG TCGAAGAGATAGGAGCAAGGAAAAGTCATCTAAAAGATCCTCTGTGACTGAAGCTATGGAAGAACAAATTTGGAAAGATT TTCCTGAAGATCTATTTGAAGCTGTGATTGCGCGACTTCCCATTGCCACATTCTTCCGCTTCCGCTCTGTATGCCGAAGA TGGAATTCCTTGCTGGCCTCTGAAAGTTTTTCTCAGCACTGTGCTCAAGTTCCACAAGCAAATCCATGGTTTTACACCAT AACTCATGAACACGCAAACTCGGGAGCCATGTATGACCCTTCTGTGAAAAAATGGTATCATCTGACTATATCAACACTGC CCACAAAGTTGATTGTTTTACCAATGGCTTCTGCCGGGGGTCTAGTTTGCTTTCTTGACATTGGTCATCGAAACTTCTAT GTTTGTAATCCACTGACTCAATCCTTCAAGGAGTTGCCGGCCCGGTCGGTTAAGGTCTGGTCTCGCATCGGTGTAGGGAT GACAATAAATGGGAACTCCTACAAGATACTGTGGGTCACTTGTGATGGAGAGTATGAAATTTATGACTCAGTGGGAAAAT CTTGGAGCCGTCAAGGAAACATGCCTGCAGGTATTAAACTTCCGTTATCACTCAATTTCAGGTCACAGGCTGTTTCTATT GACAACAAGGTCTACTTCATGCATTCAGATCCAGAAGGGATTGTTTCCTATGATATGGAAACCGGGGTTTGGACACAGTA CATGATCCCGGGGCCGCTGCACCTGACGGACCACGCGCTGGCCGAGTGCGGTGGCCGGATCATGCTTGTGGGGCTACTCT CGAAGAATGCCGCCACTTGTGTGTGCATATGGGAGCTGCAGAAGATGATGTTGTTGTGGAAGGAGGTTGACAGAATGCCA AATGAATGGTGCTTGGATTTCTACGGGAAGCACGTTCGGATGACTTGCTTGGGGAACAAAGGCTTGCTTATGTTGTCCTT GAGGTCAAGACAGATGAATCGGTTAGTTACTTATAACATCGCGAGTAGGGAATGGTTGAAGGTTCCTGCGTGCGTGGTGC CACATGGAAGAAAACGGCAATGGATAGCGTATGGTACTGCATTTCATCCATGCCTTGCTGCTGTGGCTTGATTTAGCTTG TATGGTACAACAATGGTTCAGGAACATTTCCCTTCAATCATTAGTTCCTTTGCTATTTTCTTTGCTGGCCTTTGATGTTG ATGTAGTAATGATAATGTTCTTTTCTGGTTAACAAATCAGATGGAAAATGATATGGGTTTGTAAACTTGACGTTTCTTCA ATACTTAATGCTCTCAGGCATTCAGTTTGATTACCTTGCTTCCAAGACTTGTTTTCTATGTGTATGAAGAAAGTTGTCTC TGTTTTCTAATTGAATAATGAACCAACCACTGCAATATCTTTTGCTTTGCGTAATGCAGATAATTTATATTGCGTTTGAT CACAGAAA
CDS sequence (LotjaGi4g1v0366600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAGGGGTTGCCATGCTTCGGCACCTCATCGGACAGTTGAAGCATCTCTCGGAGTCGGACCCCTCACAATCTCC TTCATTCATCCTTCTGCAACATCACACTAATCCTCAACCGCCACCCAGATGGTCCTTCTTTGACATTGATGATAACTCCG TAGATGACTTCTGTGACCTTGTAATGACAGCTGGAAAGTCTGCAAGTTTCAGTACAATGGACCTTGTAAAGCATCCGTCT ACTAAGAAGTGTCGAAGAGATAGGAGCAAGGAAAAGTCATCTAAAAGATCCTCTGTGACTGAAGCTATGGAAGAACAAAT TTGGAAAGATTTTCCTGAAGATCTATTTGAAGCTGTGATTGCGCGACTTCCCATTGCCACATTCTTCCGCTTCCGCTCTG TATGCCGAAGATGGAATTCCTTGCTGGCCTCTGAAAGTTTTTCTCAGCACTGTGCTCAAGTTCCACAAGCAAATCCATGG TTTTACACCATAACTCATGAACACGCAAACTCGGGAGCCATGTATGACCCTTCTGTGAAAAAATGGTATCATCTGACTAT ATCAACACTGCCCACAAAGTTGATTGTTTTACCAATGGCTTCTGCCGGGGGTCTAGTTTGCTTTCTTGACATTGGTCATC GAAACTTCTATGTTTGTAATCCACTGACTCAATCCTTCAAGGAGTTGCCGGCCCGGTCGGTTAAGGTCTGGTCTCGCATC GGTGTAGGGATGACAATAAATGGGAACTCCTACAAGATACTGTGGGTCACTTGTGATGGAGAGTATGAAATTTATGACTC AGTGGGAAAATCTTGGAGCCGTCAAGGAAACATGCCTGCAGGTATTAAACTTCCGTTATCACTCAATTTCAGGTCACAGG CTGTTTCTATTGACAACAAGGTCTACTTCATGCATTCAGATCCAGAAGGGATTGTTTCCTATGATATGGAAACCGGGGTT TGGACACAGTACATGATCCCGGGGCCGCTGCACCTGACGGACCACGCGCTGGCCGAGTGCGGTGGCCGGATCATGCTTGT GGGGCTACTCTCGAAGAATGCCGCCACTTGTGTGTGCATATGGGAGCTGCAGAAGATGATGTTGTTGTGGAAGGAGGTTG ACAGAATGCCAAATGAATGGTGCTTGGATTTCTACGGGAAGCACGTTCGGATGACTTGCTTGGGGAACAAAGGCTTGCTT ATGTTGTCCTTGAGGTCAAGACAGATGAATCGGTTAGTTACTTATAACATCGCGAGTAGGGAATGGTTGAAGGTTCCTGC GTGCGTGGTGCCACATGGAAGAAAACGGCAATGGATAGCGTATGGTACTGCATTTCATCCATGCCTTGCTGCTGTGGCTT GA
Protein sequence (LotjaGi4g1v0366600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEGVAMLRHLIGQLKHLSESDPSQSPSFILLQHHTNPQPPPRWSFFDIDDNSVDDFCDLVMTAGKSASFSTMDLVKHPS TKKCRRDRSKEKSSKRSSVTEAMEEQIWKDFPEDLFEAVIARLPIATFFRFRSVCRRWNSLLASESFSQHCAQVPQANPW FYTITHEHANSGAMYDPSVKKWYHLTISTLPTKLIVLPMASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRI GVGMTINGNSYKILWVTCDGEYEIYDSVGKSWSRQGNMPAGIKLPLSLNFRSQAVSIDNKVYFMHSDPEGIVSYDMETGV WTQYMIPGPLHLTDHALAECGGRIMLVGLLSKNAATCVCIWELQKMMLLWKEVDRMPNEWCLDFYGKHVRMTCLGNKGLL MLSLRSRQMNRLVTYNIASREWLKVPACVVPHGRKRQWIAYGTAFHPCLAAVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 36 | 453 | 418 | 1.3E-231 | – | |
| PANTHER | 36 | 453 | 418 | 1.3E-231 | – | |
| Gene3D | 93 | 167 | 75 | 2.3E-7 | – | |
| SUPERFAMILY | 102 | 192 | 91 | 1.31E-11 | ||
| ProSiteProfiles | 105 | 150 | 46 | 9.233 | ||
| Pfam | 108 | 147 | 40 | 1.2E-6 | ||
| SMART | 111 | 151 | 41 | 1.9E-5 | ||
| Gene3D | 168 | 439 | 272 | 5.1E-10 | ||
| SUPERFAMILY | 172 | 434 | 263 | 6.8E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0366600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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