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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0366600 |
| Transcript ID | LotjaGi4g1v0366600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT1G27340.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9FZK1|FBX6_ARATH F-box only protein 6; TrEMBL-Plants: tr|A0A0S3S1C8|A0A0S3S1C8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0366600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74655424..74656602) extracted from Lotus japonicus Gifu genome v1.2.
ATGACAGCTGGAAAGTCTGCAAGTTTCAGTACAATGGACCTTGTAAAGCATCCGTCTACTAAGAAGTGTCGAAGAGATAG GAGCAAGGAAAAGTCATCTAAAAGATCCTCTGTGACTGAAGCTATGGAAGAACAAATTTGGAAAGATTTTCCTGAAGATC TATTTGAAGCTGTGATTGCGCGACTTCCCATTGCCACATTCTTCCGCTTCCGCTCTGTATGCCGAAGATGGAATTCCTTG CTGGCCTCTGAAAGTTTTTCTCAGCACTGTGCTCAAGTTCCACAAGCAAATCCATGGTTTTACACCATAACTCATGAACA CGCAAACTCGGGAGCCATGTATGACCCTTCTGTGAAAAAATGGTATCATCTGACTATATCAACACTGCCCACAAAGTTGA TTGTTTTACCAATGGCTTCTGCCGGGGGTCTAGTTTGCTTTCTTGACATTGGTCATCGAAACTTCTATGTTTGTAATCCA CTGACTCAATCCTTCAAGGAGTTGCCGGCCCGGTCGGTTAAGGTCTGGTCTCGCATCGGTGTAGGGATGACAATAAATGG GAACTCCTACAAGATACTGTGGGTCACTTGTGATGGAGAGTATGAAATTTATGACTCAGTGGGAAAATCTTGGAGCCGTC AAGGAAACATGCCTGCAGGTATTAAACTTCCGTTATCACTCAATTTCAGGTCACAGGCTGTTTCTATTGACAACAAGGTC TACTTCATGCATTCAGATCCAGAAGGGATTGTTTCCTATGATATGGAAACCGGGGTTTGGACACAGTACATGATCCCGGG GCCGCTGCACCTGACGGACCACGCGCTGGCCGAGTGCGGTGGCCGGATCATGCTTGTGGGGCTACTCTCGAAGAATGCCG CCACTTGTGTGTGCATATGGGAGCTGCAGAAGATGATGTTGTTGTGGAAGGAGGTTGACAGAATGCCAAATGAATGGTGC TTGGATTTCTACGGGAAGCACGTTCGGATGACTTGCTTGGGGAACAAAGGCTTGCTTATGTTGTCCTTGAGGTCAAGACA GATGAATCGGTTAGTTACTTATAACATCGCGAGTAGGGAATGGTTGAAGGTTCCTGCGTGCGTGGTGCCACATGGAAGAA AACGGCAATGGATAGCGTATGGTACTGCATTTCATCCATGCCTTGCTGCTGTGGCTTGA
CDS sequence (LotjaGi4g1v0366600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGCTGGAAAGTCTGCAAGTTTCAGTACAATGGACCTTGTAAAGCATCCGTCTACTAAGAAGTGTCGAAGAGATAG GAGCAAGGAAAAGTCATCTAAAAGATCCTCTGTGACTGAAGCTATGGAAGAACAAATTTGGAAAGATTTTCCTGAAGATC TATTTGAAGCTGTGATTGCGCGACTTCCCATTGCCACATTCTTCCGCTTCCGCTCTGTATGCCGAAGATGGAATTCCTTG CTGGCCTCTGAAAGTTTTTCTCAGCACTGTGCTCAAGTTCCACAAGCAAATCCATGGTTTTACACCATAACTCATGAACA CGCAAACTCGGGAGCCATGTATGACCCTTCTGTGAAAAAATGGTATCATCTGACTATATCAACACTGCCCACAAAGTTGA TTGTTTTACCAATGGCTTCTGCCGGGGGTCTAGTTTGCTTTCTTGACATTGGTCATCGAAACTTCTATGTTTGTAATCCA CTGACTCAATCCTTCAAGGAGTTGCCGGCCCGGTCGGTTAAGGTCTGGTCTCGCATCGGTGTAGGGATGACAATAAATGG GAACTCCTACAAGATACTGTGGGTCACTTGTGATGGAGAGTATGAAATTTATGACTCAGTGGGAAAATCTTGGAGCCGTC AAGGAAACATGCCTGCAGGTATTAAACTTCCGTTATCACTCAATTTCAGGTCACAGGCTGTTTCTATTGACAACAAGGTC TACTTCATGCATTCAGATCCAGAAGGGATTGTTTCCTATGATATGGAAACCGGGGTTTGGACACAGTACATGATCCCGGG GCCGCTGCACCTGACGGACCACGCGCTGGCCGAGTGCGGTGGCCGGATCATGCTTGTGGGGCTACTCTCGAAGAATGCCG CCACTTGTGTGTGCATATGGGAGCTGCAGAAGATGATGTTGTTGTGGAAGGAGGTTGACAGAATGCCAAATGAATGGTGC TTGGATTTCTACGGGAAGCACGTTCGGATGACTTGCTTGGGGAACAAAGGCTTGCTTATGTTGTCCTTGAGGTCAAGACA GATGAATCGGTTAGTTACTTATAACATCGCGAGTAGGGAATGGTTGAAGGTTCCTGCGTGCGTGGTGCCACATGGAAGAA AACGGCAATGGATAGCGTATGGTACTGCATTTCATCCATGCCTTGCTGCTGTGGCTTGA
Protein sequence (LotjaGi4g1v0366600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTAGKSASFSTMDLVKHPSTKKCRRDRSKEKSSKRSSVTEAMEEQIWKDFPEDLFEAVIARLPIATFFRFRSVCRRWNSL LASESFSQHCAQVPQANPWFYTITHEHANSGAMYDPSVKKWYHLTISTLPTKLIVLPMASAGGLVCFLDIGHRNFYVCNP LTQSFKELPARSVKVWSRIGVGMTINGNSYKILWVTCDGEYEIYDSVGKSWSRQGNMPAGIKLPLSLNFRSQAVSIDNKV YFMHSDPEGIVSYDMETGVWTQYMIPGPLHLTDHALAECGGRIMLVGLLSKNAATCVCIWELQKMMLLWKEVDRMPNEWC LDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNIASREWLKVPACVVPHGRKRQWIAYGTAFHPCLAAVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 392 | 392 | 2.0E-224 | – | |
| MobiDBLite | 1 | 38 | 38 | - | – | |
| PANTHER | 1 | 392 | 392 | 2.0E-224 | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| Gene3D | 32 | 107 | 76 | 1.8E-7 | – | |
| SUPERFAMILY | 41 | 131 | 91 | 9.16E-12 | ||
| ProSiteProfiles | 44 | 89 | 46 | 9.233 | ||
| Pfam | 47 | 86 | 40 | 9.7E-7 | ||
| SMART | 50 | 90 | 41 | 1.9E-5 | ||
| Gene3D | 108 | 378 | 271 | 3.7E-10 | ||
| SUPERFAMILY | 111 | 373 | 263 | 4.32E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0366600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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