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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0369200 |
| Transcript ID | LotjaGi4g1v0369200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Importin-5; TAIR: AT5G19820.1 ARM repeat superfamily protein; Swiss-Prot: sp|O00410|IPO5_HUMAN Importin-5; TrEMBL-Plants: tr|A5XEM2|A5XEM2_MEDTR Importin beta-3, putative; Found in the gene: LotjaGi4g1v0369200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74871940..74875167) extracted from Lotus japonicus Gifu genome v1.2.
AAAACCCCTTGAGACTAACTTCATTTCAAGCGTGACTCTGTCTCTCTTCCCTCCCATTCGCACCGCCACCACTCACCGCT CCGGCGACGCCGATGGACAACGGCGGCGAACTCAACCTCGACGAACAAGTTCAACTAATCTACAGCAACGATCCAACCCA CACCGAAACCCTAATCACAAACCTCACCTCCTCCTCCAACCACCACCGCTCCCAAGCGGAGACACTTCTCAACCACTTAG GCTTCCATTTTCTCCCCCGAATCGCCAAATTCCTCCGATTATCCCCCAACCCGACAACCCGAACCATGTGCGCTCTCCTC CTCCGCAACCTCATCCTCACCCACTGGCCCCAAGTCTACGCCGTCCCCCGCTCCACCATCTGCCACCTCCTCGCCTACAG CCTCCACATGGAGTCCGATCCTTCCATCGCTAGGAAGATCTGCGACACCGCTTCGGACCTCGCCGCGATCATCATCCTTC CTTATAGCTATGCCCGATCGTCCGATCTCCTCTACTGGCCTAGCTTCATCCGATTCTTTAACAGTGGTGTTGCCTTAGCG GACCAGAGACTCAAGCAAATGTGCCTTCGAATCTTCGCCAGAGTGCCGCAGAATGTCCGTGAATTCCTGCTCCCTGATTC GACCTCCCGCCATGATTTCCTCGCCGGGTCTCTCGCCGCCCCCAATTGCTTTGATGTTCGTGTCACCGCCGTTGCTGCCG CCGTCAATTTCCTTCAGTGCCTCCCCAATCTCTCCGAGCAGGACAGGTATGATACACTTTCAGTCCATGTACTTTCAAAA TTGACCAAATGTGGTTCATTCATTAAATTGCCATGTAATAATTACAACAAAAAATTGATATGGTTCACAATTTTATTCAG TTTAGGGGTTAGGGTTTATGATTTAGGGTTTAGTCATTGGATAATTAACAAAAAGTTGTGGTATACTGTATATATTTATT TTCTCCGTTGGTTGTTGTGACAATTTTTTGCTGAAATGCCATGTTAACATGATATGTTGTGATAATTTGTTATTCAAATT AGCTTGGTTATGGGAGATTTTCATTTGATTGTTTCAACTAGCTTACAAATTTTAACTGAAAATATTTATGTAAGAAAACT GGTATAACTGACTAACTTTACATACAGGTTTGAAGATTTGCTGCCGTTGATGATGAGTACTTTTACTGATGTGTTGGTTT CCGGACATGAGGCTGCCGTGCAAGATTCTCTTAAGCTCTTCATTGAGCTTGCAGAGAATTGGCCTCGATTACTTGAGAAG CAAGTCACCAACATGGTTGAATCCATGCTGGAAGTTGCTGAGGATGAATCTCTAGAGGAAGGGACTTGTCATTTAGCTCT TGAGTTTGTTATGACCCTTTCTGAGACTGGAGAGCGTGCACCCGAGGTGATGAGGAAGATGTTGCAGTTTGTGCAGAGAC TGTTACTTGTGGCGATGAAACTGTTGCTGGATATTGGGGGTGATCTGGTTGAGGCTGAGGCTGAAGGTACCAATAACTAT GAATATGGACAGGAGTGTTTGTATAGGCTTTCCGTTTACTTTGGTGGGAGCGCTATAGTGCCAATTGTTTCTGAGCTGTT GCCAACTTATCTGGCTGCTTCCGAATGGAAAAAGCGTCATGCTGCACTCATTGCCCTTGCACAGATTGCAGATGGTTGTT CAGATGTATGTACTTTTACACCATTCAGAAGTTATCCTGTTATATATATTGTATTATTGTTATGTAAAGATTCTTGTACA CTTCGATATTAGATGGTGTAGTTGGACTTGTATTTTCAACTTTTATTTTTTGCATACATGTATCCATGCCTATGATATCA TAATCTTTGACGCTGCAGGAGATGATAAAAAATATGGATCATGTATTGTCGATGGTTTTAGATTCATTTCATGATCCCCA CGCTCGAGTGCGATGGGCAGCTGTAAATGCAATCCGGCAATGGTCCACTGATTTGGGGCCAGACTTGCAGGTTAAATATC ACCACCTAGTTCTGCCAGCATTAGCTGGAGCCATAGATGATTCTCAGAATCCCCGATTACAGGTTTGCACTGTTATATTG TTTAGGTTAGGCACAGTACTCATGTATTAATTCAAGTCACTTAGACTCCTCTATTTTATTATTTTGTGAAAATTTGCAAA AAAATTCTAATCGACAGTTTATATTCTCAGTCATATTAGGTTAATGATTCATGCTGTATAATCTAGCTTGAATGCTGTTC AATCTAACTTGGCCATTTGTTTCCTGTATTTGCAGGCTTATGCTGCTTCTGCCGTGTCAATTTTTGCTGAAAACTGTATT ATTAGGTTTGTAAAACCTTATTCAAATATCCTTAGGTTTGTAATTTATTAATTTTTTCTCAATAATTGTGTGCATTGCAT GAGTGTATATAATGTCACTTTGTTTGATGATTGCTTCATAATCAATAAATGTTGACCACTTCTACAGTACCGTTCCATGT TGGTACAGTGCAATTTGCTCATGTGAAAACATAGCTGGCCATAGTTCAACATATCGTTGATGAGCTGAAAATCAGAAATA ATTATCTTTTAATTTTTCAGTAGTTTCAATTTTACAAAATATTCCCTAAGAATTGTTAATAACTGATTTTCCTTACTCTG AAACCATCCCTGCAACAGGCATTGTAATTTGTAACAAGTAACGACCTCCACCGTTTGCCAGTGAACCACCATGGTCATTC ATTCAACTGCACCTAACAGTCATGTAATTCAGGTATCCATTCTCTTTCTCTGGACTTTGGTTCCTAAAATTCACCAATGT ATCCTACATTGTGCTGTTCCATTCAATTTTTTCCCTTTTCTTTGTTGGCAAATGAAAACAGGTCATAGCTCCTATGAATT GATGATGAAATGTTATTTAAGAGCTACCTCTGTGACAGCAGCAAATCAAATGGGGGAGATATTTTGACAACATCTTTTGT AATTTTAGGTTCCTTATCTGGATTAATCTATATAGTAGTTTTACTTGTACATGCTCCCTGAGTTCCAAAGTAATAAATGT TAATGTGTCATGTTGGAATATTATAGTATGATACTGAGTTATACTATGTAGAGTTTACAACTGTTGTATATGAAGTTCGC ATTATCGGATCTATAGTTTCATTTATAGAAAGATTGCTTGTGCTTATTGGAGACAGTGCACTGGCCTTCTGGCCCCTCCT AATTAACCAATGTTCTTATTTTATGCGC
CDS sequence (LotjaGi4g1v0369200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAACGGCGGCGAACTCAACCTCGACGAACAAGTTCAACTAATCTACAGCAACGATCCAACCCACACCGAAACCCT AATCACAAACCTCACCTCCTCCTCCAACCACCACCGCTCCCAAGCGGAGACACTTCTCAACCACTTAGGCTTCCATTTTC TCCCCCGAATCGCCAAATTCCTCCGATTATCCCCCAACCCGACAACCCGAACCATGTGCGCTCTCCTCCTCCGCAACCTC ATCCTCACCCACTGGCCCCAAGTCTACGCCGTCCCCCGCTCCACCATCTGCCACCTCCTCGCCTACAGCCTCCACATGGA GTCCGATCCTTCCATCGCTAGGAAGATCTGCGACACCGCTTCGGACCTCGCCGCGATCATCATCCTTCCTTATAGCTATG CCCGATCGTCCGATCTCCTCTACTGGCCTAGCTTCATCCGATTCTTTAACAGTGGTGTTGCCTTAGCGGACCAGAGACTC AAGCAAATGTGCCTTCGAATCTTCGCCAGAGTGCCGCAGAATGTCCGTGAATTCCTGCTCCCTGATTCGACCTCCCGCCA TGATTTCCTCGCCGGGTCTCTCGCCGCCCCCAATTGCTTTGATGTTCGTGTCACCGCCGTTGCTGCCGCCGTCAATTTCC TTCAGTGCCTCCCCAATCTCTCCGAGCAGGACAGGTTTGAAGATTTGCTGCCGTTGATGATGAGTACTTTTACTGATGTG TTGGTTTCCGGACATGAGGCTGCCGTGCAAGATTCTCTTAAGCTCTTCATTGAGCTTGCAGAGAATTGGCCTCGATTACT TGAGAAGCAAGTCACCAACATGGTTGAATCCATGCTGGAAGTTGCTGAGGATGAATCTCTAGAGGAAGGGACTTGTCATT TAGCTCTTGAGTTTGTTATGACCCTTTCTGAGACTGGAGAGCGTGCACCCGAGGTGATGAGGAAGATGTTGCAGTTTGTG CAGAGACTGTTACTTGTGGCGATGAAACTGTTGCTGGATATTGGGGGTGATCTGGTTGAGGCTGAGGCTGAAGGTACCAA TAACTATGAATATGGACAGGAGTGTTTGTATAGGCTTTCCGTTTACTTTGGTGGGAGCGCTATAGTGCCAATTGTTTCTG AGCTGTTGCCAACTTATCTGGCTGCTTCCGAATGGAAAAAGCGTCATGCTGCACTCATTGCCCTTGCACAGATTGCAGAT GGTTGTTCAGATGAGATGATAAAAAATATGGATCATGTATTGTCGATGGTTTTAGATTCATTTCATGATCCCCACGCTCG AGTGCGATGGGCAGCTGTAAATGCAATCCGGCAATGGTCCACTGATTTGGGGCCAGACTTGCAGGTTAAATATCACCACC TAGTTCTGCCAGCATTAGCTGGAGCCATAGATGATTCTCAGAATCCCCGATTACAGGCTTATGCTGCTTCTGCCGTGTCA ATTTTTGCTGAAAACTGTATTATTAGGCATTGTAATTTGTAA
Protein sequence (LotjaGi4g1v0369200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNGGELNLDEQVQLIYSNDPTHTETLITNLTSSSNHHRSQAETLLNHLGFHFLPRIAKFLRLSPNPTTRTMCALLLRNL ILTHWPQVYAVPRSTICHLLAYSLHMESDPSIARKICDTASDLAAIIILPYSYARSSDLLYWPSFIRFFNSGVALADQRL KQMCLRIFARVPQNVREFLLPDSTSRHDFLAGSLAAPNCFDVRVTAVAAAVNFLQCLPNLSEQDRFEDLLPLMMSTFTDV LVSGHEAAVQDSLKLFIELAENWPRLLEKQVTNMVESMLEVAEDESLEEGTCHLALEFVMTLSETGERAPEVMRKMLQFV QRLLLVAMKLLLDIGGDLVEAEAEGTNNYEYGQECLYRLSVYFGGSAIVPIVSELLPTYLAASEWKKRHAALIALAQIAD GCSDEMIKNMDHVLSMVLDSFHDPHARVRWAAVNAIRQWSTDLGPDLQVKYHHLVLPALAGAIDDSQNPRLQAYAASAVS IFAENCIIRHCNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 486 | 468 | 1.1E-112 | – | |
| PANTHER | 19 | 486 | 468 | 1.1E-112 | ||
| Gene3D | 21 | 489 | 469 | 7.7E-117 | ||
| SUPERFAMILY | 26 | 486 | 461 | 1.89E-59 | ||
| Pfam | 285 | 370 | 86 | 1.8E-6 | ||
| Pfam | 387 | 436 | 50 | 6.0E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein import into nucleus | The directed movement of a protein from the cytoplasm to the nucleus. |
Expression pattern of LotjaGi4g1v0369200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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