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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR040122
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 17 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.304s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0289100.1
n.a. Importin subunit beta-1; TAIR: AT5G53480.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9FJD4|IMB1_ARATH Importin subunit beta-1; TrEMBL-Plants: tr|V7ASE2|V7ASE2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0289100 LjG1.1_chr1 70068821 70073351 -
2 domain predictions
1 GO term
LotjaGi1g1v0289100.2
n.a. Importin subunit beta-1; TAIR: AT5G53480.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9FJD4|IMB1_ARATH Importin subunit beta-1; TrEMBL-Plants: tr|V7ASE2|V7ASE2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0289100 LjG1.1_chr1 70069905 70072608 -
2 domain predictions
1 GO term
LotjaGi1g1v0643800.1
n.a. Importin-5; TAIR: AT5G19820.1 ARM repeat superfamily protein; Swiss-Prot: sp|O00410|IPO5_HUMAN Importin-5; TrEMBL-Plants: tr|A5XEM2|A5XEM2_MEDTR Importin beta-3, putative; Found in the gene: LotjaGi1g1v0643800 LjG1.1_chr1 120112733 120124670 -
2 domain predictions
1 GO term
LotjaGi4g1v0369200.1
n.a. Importin-5; TAIR: AT5G19820.1 ARM repeat superfamily protein; Swiss-Prot: sp|O00410|IPO5_HUMAN Importin-5; TrEMBL-Plants: tr|A5XEM2|A5XEM2_MEDTR Importin beta-3, putative; Found in the gene: LotjaGi4g1v0369200 LjG1.1_chr4 74871940 74875167 +
2 domain predictions
1 GO term
LotjaGi4g1v0376600.1
n.a. Importin-5; TAIR: AT5G19820.1 ARM repeat superfamily protein; Swiss-Prot: sp|O00410|IPO5_HUMAN Importin-5; TrEMBL-Plants: tr|I1KSC8|I1KSC8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0376600 LjG1.1_chr4 75562541 75569098 +
2 domain predictions
1 GO term
LotjaGi4g1v0376600.2
n.a. Importin-5; TAIR: AT5G19820.1 ARM repeat superfamily protein; Swiss-Prot: sp|O00410|IPO5_HUMAN Importin-5; TrEMBL-Plants: tr|A0A151TKV1|A0A151TKV1_CAJCA Importin-5; Found in the gene: LotjaGi4g1v0376600 LjG1.1_chr4 75563243 75566548 +
2 domain predictions
1 GO term
LotjaGi4g1v0376600.4
n.a. Importin-5; TAIR: AT5G19820.1 ARM repeat superfamily protein; Swiss-Prot: sp|O74476|IMB3_SCHPO Importin subunit beta-3; TrEMBL-Plants: tr|A0A151TKV1|A0A151TKV1_CAJCA Importin-5; Found in the gene: LotjaGi4g1v0376600 LjG1.1_chr4 75563920 75565318 +
2 domain predictions
1 GO term
LotjaGi4g1v0437800.1
n.a. Importin subunit beta-1; TAIR: AT5G53480.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9FJD4|IMB1_ARATH Importin subunit beta-1; TrEMBL-Plants: tr|I1KPN2|I1KPN2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0437800 LjG1.1_chr4 81095241 81100251 -
2 domain predictions
1 GO term
LotjaGi4g1v0437800.2
n.a. Importin subunit beta-1; TAIR: AT5G53480.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9FJD4|IMB1_ARATH Importin subunit beta-1; TrEMBL-Plants: tr|I1KPN2|I1KPN2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0437800 LjG1.1_chr4 81096366 81099066 -
2 domain predictions
1 GO term
LotjaGi5g1v0350400.1
n.a. Importin beta-1, putative; TAIR: AT2G16950.2 transportin 1; Swiss-Prot: sp|Q8H0U4|TNPO1_ARATH Transportin-1; TrEMBL-Plants: tr|A0A151TQB2|A0A151TQB2_CAJCA Transportin-1; Found in the gene: LotjaGi5g1v0350400 LjG1.1_chr5 66630987 66648951 +
2 domain predictions
1 GO term
LotjaGi5g1v0350400.2
n.a. Importin beta-1, putative; TAIR: AT2G16950.2 transportin 1; Swiss-Prot: sp|Q8H0U4|TNPO1_ARATH Transportin-1; TrEMBL-Plants: tr|A0A0B2RSI8|A0A0B2RSI8_GLYSO Transportin-1; Found in the gene: LotjaGi5g1v0350400 LjG1.1_chr5 66631254 66648097 +
2 domain predictions
1 GO term
LotjaGi5g1v0350400.3
n.a. Transportin-1; TAIR: AT2G16950.2 transportin 1; Swiss-Prot: sp|Q8H0U4|TNPO1_ARATH Transportin-1; TrEMBL-Plants: tr|A0A151TQB2|A0A151TQB2_CAJCA Transportin-1; Found in the gene: LotjaGi5g1v0350400 LjG1.1_chr5 66631254 66648097 +
2 domain predictions
1 GO term
LotjaGi5g1v0350400.4
n.a. Importin beta-1, putative; TAIR: AT2G16950.2 transportin 1; Swiss-Prot: sp|Q8H0U4|TNPO1_ARATH Transportin-1; TrEMBL-Plants: tr|A0A151TQB2|A0A151TQB2_CAJCA Transportin-1; Found in the gene: LotjaGi5g1v0350400 LjG1.1_chr5 66631254 66648097 +
2 domain predictions
1 GO term
LotjaGi6g1v0053800.1
n.a. Importin-like protein; TAIR: AT5G19820.1 ARM repeat superfamily protein; Swiss-Prot: sp|O74476|IMB3_SCHPO Importin subunit beta-3; TrEMBL-Plants: tr|G7J8P5|G7J8P5_MEDTR Importin beta-3, putative; Found in the gene: LotjaGi6g1v0053800 LjG1.1_chr6 9637206 9641850 -
2 domain predictions
1 GO term
LotjaGi6g1v0360700.2
n.a. Importin beta; TAIR: AT4G27640.1 ARM repeat superfamily protein; Swiss-Prot: sp|O60100|IMB4_SCHPO Probable importin subunit beta-4; TrEMBL-Plants: tr|K7M9M1|K7M9M1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0360700 LjG1.1_chr6 67280864 67288096 -
2 domain predictions
1 GO term
LotjaGi6g1v0360700.3
n.a. Importin beta; TAIR: AT4G27640.1 ARM repeat superfamily protein; Swiss-Prot: sp|O60100|IMB4_SCHPO Probable importin subunit beta-4; TrEMBL-Plants: tr|I3SK10|I3SK10_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0360700 LjG1.1_chr6 67281697 67283292 -
2 domain predictions
1 GO term
LotjaGi6g1v0360700.4
n.a. Importin beta; TAIR: AT4G27640.1 ARM repeat superfamily protein; Swiss-Prot: sp|O60100|IMB4_SCHPO Probable importin subunit beta-4; TrEMBL-Plants: tr|I3SK10|I3SK10_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0360700 LjG1.1_chr6 67281697 67288020 -
2 domain predictions
1 GO term